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bin/extract_seqs.rb | 755 | 0 | 0 | | | 788 Bytes | beacbe318cce4db639b30239d1336e77ae303ad822df70123f4bf66e63d02baa |
bin/extract_seqs_from_fasta.rb | 755 | 0 | 0 | | | 937 Bytes | a40a5f5b419616ddbdd71a4e07f4071875e8dcec37824d6f51e36bc28199cb1e |
bin/extract_seqs_from_fastq.rb | 755 | 0 | 0 | | | 696 Bytes | 5d369dc36f9ea7a525a7e8c7a4cd604fd66aa26d4cf33ee4f6fec208a610fe91 |
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bin/join_big_illumina_paired.sh | 755 | 0 | 0 | | | 3.3 KB | 650098225a605fa0a49de48a133b5c8338bf4b411dca52bca214541aac28ab80 |
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bin/parse_amplicons.rb | 755 | 0 | 0 | | | 2.04 KB | e8ed262533cb3e2052038ce375d51fe4959c3b98f051fd66ade295a3af4305c9 |
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bin/split_ilumina_paired.rb | 755 | 0 | 0 | | | 1.21 KB | 0efde893f4e263d33341a411ca5b02fcc987a569d9415ca1a122817ad45b0a09 |
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History.txt | 644 | 0 | 0 | | | 1.88 KB | 77864ab07f1262b615e944a6f559265f6917df9ebf422dd8b7e8eef543ba5ad3 |
lib/seqtrimnext/actions/action_ab_adapter.rb | 644 | 0 | 0 | | | 780 Bytes | d6558e8ea5e78db24f818c8906fbc0a2329c7e970fe311a4a49c97443c83ec3f |
lib/seqtrimnext/actions/action_ab_far_adapter.rb | 644 | 0 | 0 | | | 782 Bytes | 3e57334aa95189ecf4cf30eed1d967a61338162981e4b62eefd29aeba6ad23b0 |
lib/seqtrimnext/actions/action_ab_left_adapter.rb | 644 | 0 | 0 | | | 783 Bytes | 9156d919c039b619d029a0710babfd4b7068ca2b0bfcf7fb0ca1aa49b70d8f84 |
lib/seqtrimnext/actions/action_user_contaminant.rb | 644 | 0 | 0 | | | 556 Bytes | 7fa0ed8a6dd20fdaa56662dec0eac2f0749dedbe54d0cdabcfe49f579a1010e6 |
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lib/seqtrimnext/actions/action_ignore_repeated.rb | 644 | 0 | 0 | | | 570 Bytes | fcdae96fb410b08c6d1bf40a8c1c9da7b89cb924ddb96a93899ed40fb4806f3a |
lib/seqtrimnext/actions/action_indetermination.rb | 644 | 0 | 0 | | | 776 Bytes | 3ce9171df7e27f6338f7b382d917114656cce1b582aa5c5010db5febef2d23d1 |
lib/seqtrimnext/actions/action_induced_low_complexity.rb | 644 | 0 | 0 | | | 680 Bytes | cc1b4c507677c9c755caf675ef5cbc19953101a2932ee6356d0e4ea25be9322a |
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lib/seqtrimnext/actions/action_is_contaminated.rb | 644 | 0 | 0 | | | 770 Bytes | 713d00244a29d926e4d7ca39176cae7829ccecc58fe63de0a5ecc883d77ca9d8 |
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lib/seqtrimnext/actions/action_multiple_linker.rb | 644 | 0 | 0 | | | 640 Bytes | 9eeac7234fa235117805bf336d8aca7a69c605aad8ac8c5121d278a3ec651286 |
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lib/seqtrimnext/actions/action_unexpected_vector.rb | 644 | 0 | 0 | | | 768 Bytes | d2a9954859cb61f29c1631a2225ea7b27edeffec35d0da119ded060fa0bc079e |
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lib/seqtrimnext/classes/action_manager.rb | 644 | 0 | 0 | | | 1.44 KB | bfa3af4fa04965e04625a9827becf2436008774f905cda58f0393c1299e6829c |
lib/seqtrimnext/classes/em_classes/seqtrim_work_manager.rb | 644 | 0 | 0 | | | 8.17 KB | 36f9ca187e1ef19ac17ae3fe957b86661e081befb95698566695cf0626ff88cf |
lib/seqtrimnext/classes/em_classes/seqtrim_worker.rb | 644 | 0 | 0 | | | 11.4 KB | fc40c60a32889a126e6beb1cdf0d84e110f51f34e53c20865461cfee494b1cc3 |
lib/seqtrimnext/classes/extract_stats.rb | 644 | 0 | 0 | | | 6.32 KB | 2008f9c39e3b530f82e808046dbcb3cb9770fdab2b17da37ee62852276c1c189 |
lib/seqtrimnext/classes/gnu_plot_graph.rb | 644 | 0 | 0 | | | 3.79 KB | 6f9c155a17990b8190727cd245642493f850ee6939f5365ce6272a51641efddb |
lib/seqtrimnext/classes/graph_stats.rb | 644 | 0 | 0 | | | 2.07 KB | cd38b04e7a612d80bff1dbc8a16afc65977399883c95a9999a3cb94adbb74ca4 |
lib/seqtrimnext/classes/install_database.rb | 644 | 0 | 0 | | | 1.04 KB | e7dc854675a969d9bda75d2a533e0ca03946f9a9a8e3f6d1fff88e075a641cbf |
lib/seqtrimnext/classes/install_requirements.rb | 644 | 0 | 0 | | | 3.22 KB | 09fa16638eb47744e4c39b4719cc4011a5508fa0aabf21d1ba189b7debcdc38d |
lib/seqtrimnext/classes/list_db.rb | 644 | 0 | 0 | | | 800 Bytes | 4ed4cd4f7ba6479c32d9fdc17a47f853bd1f9cf93dc37ad78be52b6768c4862e |
lib/seqtrimnext/classes/make_blast_db.rb | 644 | 0 | 0 | | | 3.6 KB | bb1873fc932056b3afc339f831f83d14602a2ebec0336ee778a4bfb5c4fcae2a |
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lib/seqtrimnext/classes/piro.rb | 644 | 0 | 0 | | | 2.07 KB | 75f5b6295cf9da5233714e642ba0792715fdf0b0895117a9cb523ca59f1ebfc0 |
lib/seqtrimnext/classes/plugin_manager.rb | 644 | 0 | 0 | | | 4.17 KB | 2b05783189d5bf78b3d698d5be5ebdf352c4fba3a045a9dc874c0972179593c7 |
lib/seqtrimnext/classes/scan_for_restr_site.rb | 644 | 0 | 0 | | | 4.22 KB | 9e45cd33827aed3b4ecddfe39f0dc008fa6bbcc8b355e57c03ff79d970383563 |
lib/seqtrimnext/classes/scbi_stats.rb | 644 | 0 | 0 | | | 1009 Bytes | 7c45baf3430284f4616b02160033d20e2fcf46df1d6de5a40539221115c634de |
lib/seqtrimnext/classes/seqtrim.rb | 644 | 0 | 0 | | | 11.1 KB | 553ae7c4c04697920424ca253b6bd020a3e2c5ba04c95cb434af75ad4dfebb83 |
lib/seqtrimnext/classes/sequence.rb | 644 | 0 | 0 | | | 1.34 KB | ffec0092c54eeb94edc3d2cf267118ebc8c2bccf6f0655736c5a3b9cc1e63b9d |
lib/seqtrimnext/classes/sequence_group.rb | 644 | 0 | 0 | | | 1.29 KB | b91e8379b746e20026e686a3ea445a3147edd47a30423188261c8fac58f9111d |
lib/seqtrimnext/classes/sequence_with_action.rb | 644 | 0 | 0 | | | 15.7 KB | 5e253b889bb870e3e97897ab50a8c398166b72ecbbbd07197d34c6b275a0b859 |
lib/seqtrimnext/plugins/plugin.rb | 644 | 0 | 0 | | | 7.27 KB | 3bf1a374b115f54579cb24c5653e27ba5fe36b86fe881bc6b2165c3366db515c |
lib/seqtrimnext/plugins/plugin_ab_adapters.rb | 644 | 0 | 0 | | | 6.5 KB | 6d3017fd6d14dff6af0c2d63639266b2ad5ac4e5f390b45b33dd0a260c1bef62 |
lib/seqtrimnext/plugins/plugin_adapters.rb | 644 | 0 | 0 | | | 6.85 KB | 122166602f4d17c26b9b15cd98878b92a1313586ca840ea822a62728277ea1a9 |
lib/seqtrimnext/plugins/plugin_amplicons.rb | 644 | 0 | 0 | | | 5.72 KB | caa187880faa96cccd5bf983a0f0832b81697a55d7a630d62a80c2ebc8f8eec3 |
lib/seqtrimnext/plugins/plugin_contaminants.rb | 644 | 0 | 0 | | | 7.34 KB | 0ada293fe96a8276545ae036b079b60efaa1b0b2f7eebfd5fda7bf5fbeba135a |
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lib/seqtrimnext/plugins/plugin_extract_inserts.rb | 644 | 0 | 0 | | | 15.3 KB | f233aecbfc68803757c611e164995ef5be6b5190502a3bb40303eb1ecb5bd1c2 |
lib/seqtrimnext/plugins/plugin_find_poly_at.rb | 644 | 0 | 0 | | | 10.4 KB | 646ae5bd73d2202b4e574711131af22de39d078e1084e3d57b9353a0f520f26e |
lib/seqtrimnext/plugins/plugin_ignore_repeated.rb | 644 | 0 | 0 | | | 3.26 KB | 488fa1535560305e1c13d95249fef4664644c9fe7cdde3a55d373d8e6742780c |
lib/seqtrimnext/plugins/plugin_indeterminations.rb | 644 | 0 | 0 | | | 5.05 KB | a064f1003c2325775fcbeb15387215d590af2126581f14696af448e4ebb6cf61 |
lib/seqtrimnext/plugins/plugin_key.rb | 644 | 0 | 0 | | | 1.65 KB | 21c12aed298f34599d6c076ec1a4a3544b2f698d373762578d0dbcb42ecff9d3 |
lib/seqtrimnext/plugins/plugin_linker.rb | 644 | 0 | 0 | | | 8.07 KB | fd3ab53f27a277e7e31a3fe1b50b6664ab37966b462e433f9da311c055ed6935 |
lib/seqtrimnext/plugins/plugin_low_complexity.rb | 644 | 0 | 0 | | | 2.31 KB | 1fb38b46a7cf21b8849fab3d4abe2949d4ce1b0ec4ee6209b3ad362796a1fea6 |
lib/seqtrimnext/plugins/plugin_low_high_size.rb | 644 | 0 | 0 | | | 2.04 KB | b420292c4b732558defbc6a3da3850207f2b6cd9d0100cdf085e31e9578dbcc4 |
lib/seqtrimnext/plugins/plugin_low_quality.rb | 644 | 0 | 0 | | | 5.68 KB | e73ea8a05326873ae35309170644fd154f1934a9f6185f37c78ec973c9c75b5f |
lib/seqtrimnext/plugins/plugin_mids.rb | 644 | 0 | 0 | | | 7.17 KB | 18c68f2a6bbe351ca36c2430105e6b5ef600a8ae0b82a934909e95a04d388441 |
lib/seqtrimnext/plugins/plugin_short_insert.rb | 644 | 0 | 0 | | | 7.49 KB | 211052529a9f5b6147b839047317337e3af748604bcad7ccacc21f983717d220 |
lib/seqtrimnext/plugins/plugin_vectors.rb | 644 | 0 | 0 | | | 7.4 KB | 0fb62646f876070df8a20edc08196cf3875f4edcb1b5daf8c5063becaed64a6a |
lib/seqtrimnext/templates/amplicons.txt | 644 | 0 | 0 | | | 1.29 KB | 2cafa7bdc2484bb4ed5604cd747a5eff222ddeb2aca3ac295f376e4501962c32 |
lib/seqtrimnext/templates/sanger.txt | 644 | 0 | 0 | | | 1.07 KB | a2d7c931d32550a3b40fc6717ff6fe35c8b8728a81acddc39b9a1f8d14d77399 |
lib/seqtrimnext/templates/only_quality.txt | 644 | 0 | 0 | | | 645 Bytes | 4206c02ad9b785b5e9179b6a500ced10f582163ff4b2553a49ac5bb070f1e61d |
lib/seqtrimnext/templates/genomics_454.txt | 644 | 0 | 0 | | | 1.23 KB | ebcdcc9a51941b30483c9b8e043890378d87583534b9a42859a40291ccd68cad |
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lib/seqtrimnext/utils/extract_samples.rb | 644 | 0 | 0 | | | 1.23 KB | 743bae369aab57a4b3cf61d397ed03ec498706d5f6c02b5f9fa002a7ef155ccf |
lib/seqtrimnext/utils/fasta2xml.rb | 755 | 0 | 0 | | | 1.48 KB | e959f2323640413e45f545b5c78fb937c2b6672000c948886bcf024a434e9382 |
lib/seqtrimnext/utils/global_match.rb | 644 | 0 | 0 | | | 1.12 KB | eda69bf0400b01cb4de839a533a8635c7efcedcd0d5754656a8fe3369c2f82f8 |
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lib/seqtrimnext/utils/json_utils.rb | 755 | 0 | 0 | | | 840 Bytes | d7797ad57aa054736c4411c4138d3d654dacf9f3fbaea0e3fb22faab50a49d8a |
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lib/seqtrimnext.rb | 644 | 0 | 0 | | | 980 Bytes | 27641eddd31843c2eff0011e925646cad8e1735f9a94eb45d3a3e66d58efa285 |
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script/console | 755 | 0 | 0 | | | 444 Bytes | a7bc8ad3af78caf50e6cbc49cb2ee29435b0c2496b45b4714836c3ba80a8558a |
script/destroy | 755 | 0 | 0 | | | 387 Bytes | cb0bfb7f3ac2cdd6c819b697358dca23045da44e87c17a1aaeb1ab4728650ea0 |
script/generate | 755 | 0 | 0 | | | 389 Bytes | 7a1a3b54a1bf128119371bc3295119bfbe8af9eed81917f57047a231f2ac3477 |
test/test_helper.rb | 644 | 0 | 0 | | | 94 Bytes | 2088de1eef09a84b4b682a1b4edff106e8b5679ebb3c6a31052dc37326ff0b31 |
test/test_seqtrimnext.rb | 644 | 0 | 0 | | | 173 Bytes | 5d237a0fb11b4c1741c2c1590b5a56d364ecec189a29bcd7b9da0ad462d57870 |