Sha256: 9f376ffe2bf7b4a8b986af692872e18d7048409200bbcf6874a94979e784738c
Contents?: true
Size: 1.39 KB
Versions: 11
Compression:
Stored size: 1.39 KB
Contents
# ====================================== # General parameters GENOMICS WITH POSSIBLE LINKER # ====================================== # Help: <br/>This template is used to preprocess Roche 454 genomic data including paired-end <br/> # Help: <br/><b>Plugin list and aplication order:</b><br/> # Help: <ul> # Help: <li>PluginLowHighSize: rejecting too short or too long sequences</li> # Help: <li>PluginMids: trimming Roche 454 MIDs and keys</li> # Help: <li>PluginIndeterminations: retaining the longest sequence fragment without indeterminations (N)</li> # Help: <li>PluginAbAdapters: trimming the Roche 454 AB adapters</li> # Help: <li>PluginUserContaminants: discarding sequences matching any entry in the user contaminant database saving them in a separate file</li> # Help: <li>PluginContaminants: trimming the contaminant fragments found in the contaminant database. When contamination is prevalent, sequences are rejected. </li> # Help: <li>PluginLinker: splits Roche 454 paired-end sequences by any linker found in linkers database. Linker is removed.</li> # Help: <li>PluginVectors: trimming any cloning vector found in SeqTrimNEXT database. </li> # Help: <li>PluginLowQuality: trimming low quality regions from sequences. </li> # Help: </ul> plugin_list = PluginLowHighSize,PluginMids,PluginIndeterminations,PluginAbAdapters,PluginUserContaminants,PluginContaminants,PluginLinker,PluginVectors,PluginLowQuality
Version data entries
11 entries across 11 versions & 1 rubygems