Sha256: e211e71d1d01463b256d784e3802b1932a4278fe0e2b393ff0a4b82dd4c74f52
Contents?: true
Size: 587 Bytes
Versions: 28
Compression:
Stored size: 587 Bytes
Contents
#!/usr/bin/env ruby
class OneBlast
def initialize(database, blast_type = 'blastp')
@blast_type = blast_type
@database = database
@c=0
end
def do_blast(seq_fasta)
@f = File.new('one_blast_aux.fasta','w+')
@f.puts ">SEQNAME_"+@c.to_s
@f.puts seq_fasta
@c = @c+1
@f.close
cmd = '~blast/programs/x86_64/bin/blastall -p '+@blast_type+' -d '+@database + ' -i one_blast_aux.fasta -o one_blast_aux.out'
#puts cmd
system(cmd)
res =''
File.open('one_blast_aux.out').each_line { |line|
res = line
}
end
def close
end
end
Version data entries
28 entries across 28 versions & 1 rubygems