Contents

#================================================
# SCBI - dariogf <[e-mail]>
#------------------------------------------------
#
# Version: 0.1 - 04/2009
#
# Usage: require "utils/fasta_utils"
#
# Fasta utilities
#
# 
#
#================================================

require File.dirname(__FILE__) +"/fasta_reader.rb"

	######################################
	# Define a subclass to override events
	######################################
class LoadFastaNamesInHash< FastaReader

	attr_reader :names

	#override begin processing
	def on_begin_process()
		@names = {}
	end

	def on_process_sequence(seq_name,seq_fasta)
		@names[seq_name]=true
	end

	#override end processing
	def on_end_process()
	end

end

Version data entries

28 entries across 28 versions & 1 rubygems

Version	Path
seqtrimnext-2.0.68	lib/seqtrimnext/utils/load_fasta_names_in_hash.rb
seqtrimnext-2.0.66	lib/seqtrimnext/utils/load_fasta_names_in_hash.rb
seqtrimnext-2.0.62	lib/seqtrimnext/utils/load_fasta_names_in_hash.rb
seqtrimnext-2.0.61	lib/seqtrimnext/utils/load_fasta_names_in_hash.rb
seqtrimnext-2.0.60	lib/seqtrimnext/utils/load_fasta_names_in_hash.rb
seqtrimnext-2.0.59	lib/seqtrimnext/utils/load_fasta_names_in_hash.rb
seqtrimnext-2.0.57	lib/seqtrimnext/utils/load_fasta_names_in_hash.rb
seqtrimnext-2.0.56	lib/seqtrimnext/utils/load_fasta_names_in_hash.rb
seqtrimnext-2.0.55	lib/seqtrimnext/utils/load_fasta_names_in_hash.rb
seqtrimnext-2.0.54	lib/seqtrimnext/utils/load_fasta_names_in_hash.rb
seqtrimnext-2.0.52	lib/seqtrimnext/utils/load_fasta_names_in_hash.rb
seqtrimnext-2.0.51	lib/seqtrimnext/utils/load_fasta_names_in_hash.rb
seqtrimnext-2.0.50	lib/seqtrimnext/utils/load_fasta_names_in_hash.rb
seqtrimnext-2.0.49	lib/seqtrimnext/utils/load_fasta_names_in_hash.rb
seqtrimnext-2.0.48	lib/seqtrimnext/utils/load_fasta_names_in_hash.rb
seqtrimnext-2.0.46	lib/seqtrimnext/utils/load_fasta_names_in_hash.rb
seqtrimnext-2.0.45	lib/seqtrimnext/utils/load_fasta_names_in_hash.rb
seqtrimnext-2.0.42	lib/seqtrimnext/utils/load_fasta_names_in_hash.rb
seqtrimnext-2.0.41	lib/seqtrimnext/utils/load_fasta_names_in_hash.rb
seqtrimnext-2.0.39	lib/seqtrimnext/utils/load_fasta_names_in_hash.rb