Sha256: 157ecb7a25555aea9190ba49391e5c3bbdf2f29de877fdcda0fc3a6f28af4671
Contents?: true
Size: 577 Bytes
Versions: 28
Compression:
Stored size: 577 Bytes
Contents
#!/usr/bin/env ruby
require 'scbi_fasta'
GOOD_QUAL=50
BAD_QUAL=10
DOWN_CASE=('a'..'z')
class Array
def count
self.length
end
end
if ARGV.count < 3
puts "#{$0} FASTA QUAL SEQ_NAME [f|q|fq]"
exit
else
fqr=FastaQualFile.new(ARGV[0],ARGV[1])
get_type = 'fq'
if ARGV.count == 4
get_type=ARGV[3]
end
fqr.each do |seq_name,seq_fasta,seq_qual|
if seq_name == ARGV[2]
if get_type.index('f')
puts ">#{seq_name}"
puts seq_fasta
end
if get_type.index('q')
puts ">#{seq_name}"
puts seq_qual
end
break
end
end
fqr.close
end
Version data entries
28 entries across 28 versions & 1 rubygems