Contents

# ======================================
# General parameters SANGER
# ======================================

# Help: <br/>This template is used to preprocess Sanger genomic data <br/>

# Help: <br/><b>Plugin list and aplication order:</b><br/>

# Help: <ul>
# Help: <li>PluginIndeterminations: retaining the longest sequence fragment without indeterminations (N)</li>
# Help: <li>PluginAdapters: trimming adapters</li>

# Help: <li>PluginUserContaminants: discarding sequences matching any entry in the user contaminant database saving them in a separate file</li>

# Help: <li>PluginContaminants: trimming the contaminant fragments found in the contaminant database. When contamination is prevalent, sequences are rejected. </li>
# Help: <li>PluginVectors: trimming any cloning vector found in SeqTrimNEXT database. </li>
# Help: <li>PluginLowQuality: trimming low quality regions from sequences. </li>
# Help: </ul>

plugin_list = PluginIndeterminations,PluginAdapters,PluginFindPolyAt,PluginContaminants,PluginVectors,PluginLowQuality

# do not remove cloned sequences
remove_clonality=false

Version data entries

1 entries across 1 versions & 1 rubygems

Version	Path
seqtrimnext-2.0.54	lib/seqtrimnext/templates/sanger.txt