Sha256: 713d00244a29d926e4d7ca39176cae7829ccecc58fe63de0a5ecc883d77ca9d8
Contents?: true
Size: 770 Bytes
Versions: 28
Compression:
Stored size: 770 Bytes
Contents
require "seqtrim_action"
########################################################
# Author: Almudena Bocinos Rioboo
#
# Defines the main methods that are necessary to execute Plugin1
# Inherit: Plugin
########################################################
class ActionIsContaminated < SeqtrimAction
def initialize(start_pos,end_pos)
super(start_pos,end_pos)
@cut =true
end
# def apply_to(seq)
#
# # seq.seq_fasta = seq.seq_fasta.slice(start_pos,end_pos)
# $LOG.debug " Applying #{self.class} to seq #{seq.seq_name} . BEGIN: #{@start_pos} END: #{@end_pos} "
#
# end
def apply_decoration(char)
return char.red
end
end
Version data entries
28 entries across 28 versions & 1 rubygems