Sha256: 0dccaf797303144b16e952f4c8ee3ff0354fd22c5ecb1d42b29714b3aaae4158
Contents?: true
Size: 506 Bytes
Versions: 28
Compression:
Stored size: 506 Bytes
Contents
#!/usr/bin/env ruby
require 'scbi_fastq'
if ARGV.count < 2
puts "#{$0} FASTQ OUTPUT_NAME"
exit
end
fastq = ARGV.shift
output_name = ARGV.shift
fasta = File.open(output_name+'.fasta','w')
qual = File.open(output_name+'.fasta.qual','w')
fqr=FastqFile.new(fastq)
fqr.each do |seq_name,seq_fasta,seq_qual,comments|
fasta.puts ">#{seq_name} #{comments}"
fasta.puts seq_fasta
qual.puts ">#{seq_name} #{comments}"
qual.puts seq_qual.join(' ')
end
fasta.close
qual.close
fqr.close
Version data entries
28 entries across 28 versions & 1 rubygems