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Versions: 11
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Contents
class SequenceGroup
attr_accessor :stats,:output_text,:output_files
def initialize(seqs)
@stats={}
@seqs=seqs
@output_text={}
@output_files={}
end
def push(seq)
@seqs.push seq
end
def delete(seq)
@seqs.delete(seq)
end
def empty?
return @seqs.empty?
end
def each
@seqs.each do |seq|
yield seq
end
end
def each_slice(n)
@seqs.each_slice(n) do |seqs|
yield seqs
end
end
def each_with_index
@seqs.each_with_index do |seq,i|
yield seq,i
end
end
def reverse_each
@seqs.reverse_each do |seq|
yield seq
end
end
def add(array)
@seqs = @seqs + array
# sort by tuple_id and order in tuple
@seqs.sort! do |a,b|
comp = (a.tuple_id <=> b.tuple_id)
comp.zero? ? (a.order_in_tuple <=> b.order_in_tuple) : comp
end
# print
# @seqs.each do |s|
# puts "TID:#{s.tuple_id}, OIT: #{s.order_in_tuple}"
# end
end
def count
return @seqs.count
end
def include?(s)
return @seqs.include?(s)
end
def remove_all_seqs
@seqs=[]
end
# def job_identifier
# return @seqs[0].seq_name
# end
def inspect
return "Group with #{@seqs.count} sequences"
end
end
Version data entries
11 entries across 11 versions & 1 rubygems