Sha256: 9306a03ff91bb60eb38e9f28098e03fa40d109077d886376b77648deb2259a12
Contents?: true
Size: 823 Bytes
Versions: 28
Compression:
Stored size: 823 Bytes
Contents
require "seqtrim_action"
########################################################
# Author: Almudena Bocinos Rioboo
#
# Defines the main methods that are necessary to execute PluginPairedReads
# Inherit: Plugin
########################################################
class ActionPairedReads < SeqtrimAction
def initialize(start_pos,end_pos)
super(start_pos,end_pos)
@cut =true
end
def apply_to(seq)
$LOG.debug "Applying #{self.class}"
#Storage the first and second subsequences
subseq1 = seq.seq_fasta[0,@start_pos-1]
subseq2 = seq.seq_fasta[@end_pos+1,seq.seq_fasta.length-1]
#$LOG.debug "\nSubsequence left: #{subseq1} \n Subsequence right: #{subseq2}}"
end
end
Version data entries
28 entries across 28 versions & 1 rubygems