Sha256: 1085cb71b2324154ac9cc3e79a1c91aa2698090a193e9b58d9546972602be7fa
Contents?: true
Size: 591 Bytes
Versions: 22
Compression:
Stored size: 591 Bytes
Contents
#!/usr/bin/env ruby
require 'scbi_fastq'
if ARGV.count < 3
puts "#{$0} FASTQ OUTPUT_NAME SPLIT_BY"
exit
end
fastq = ARGV.shift
output_name = ARGV.shift
split_by = ARGV.shift.to_i
file_index=1
out=FastqFile.new("#{output_name}#{file_index}.fastq",'w')
fqr=FastqFile.new(fastq)
count = 0
fqr.each do |seq_name,seq_fasta,seq_qual,comments|
out.write_seq(seq_name,seq_fasta,seq_qual,comments)
count +=1
if (count % split_by) == 0
file_index +=1
out.close
out=FastqFile.new("#{output_name}#{file_index}.fastq",'w')
end
end
out.close
fqr.close
Version data entries
22 entries across 22 versions & 1 rubygems