bioruby-bio-1.3.0.5000

https://rubygems.org

id: 695500

number: 1.3.0.5000

platform: ruby

spec_sha256: 8af386f452ee9de8dd7606675788637a3e37d44c2fb11a6d33aaef13e9f47d4b

sha256: b752e959b041d7da140fbe84caee8eac6bbddd386a61ab499166b3179a1480ba

created_at: 2024-05-13 08:24:18 UTC

updated_at: 2024-06-10 02:24:37 UTC

position: 2

version_data_entries_count: 405

uploaded_at: 2014-08-11 07:28:33 UTC

indexed: true

has_extensions:

extensions:

Gem size: 889 KB

Version Data Entries

Total: 405

Unpacked size: 3.53 MB

Full Name	Mode	Size	SHA
lib/bio/appl/bl2seq/report.rb	644	11.3 KB	3ca1ec254b043913e319665db79a256ab5c49241ea27cfd49a3bccabd0854888
ChangeLog	644	109 KB	e3ed0a99f6c8ca4947a1508a7937b072126dc122985fe63313ce7b2c1586ecc5
KNOWN_ISSUES.rdoc	644	2.99 KB	6b95586a42b876488f8a92939ca7f23e9ef1b8c451623f421662aea768993d42
README.rdoc	644	7.4 KB	b1c514baf736ed4ae8ab860edf713f1d45cbdfcd84fed66fd333bb51d3da07ba
README_DEV.rdoc	644	9 KB	f301218691598b235e5b0a8603bde7b5bb302376f2b0eba14e101e666b152d13
Rakefile	644	3.81 KB	d343576650f2ed5b5d169aec464bea75cf965a6bf3893132a161380cdd26c0ab
bin/bioruby	755	924 Bytes	a63d7ce0890c96f697a289f57f0dbf764b3b6692d6a49e660d527f1674a9872f
bin/br_biofetch.rb	755	1.23 KB	c851dd31e33f68abf5d8af990db7e30ecb9c06af47a66034743e57784972a067
bin/br_bioflat.rb	755	7.17 KB	8d87c3730fe70eac916f8915b9472fde9ccace80208b0e01cda83f66d7780199
bin/br_biogetseq.rb	755	799 Bytes	2ceea85a863d416213b4d4e1aebdb53cfbf3a6fd84fdb9f36c7a50a85bb32a60
bin/br_pmfetch.rb	755	9.87 KB	0d44e2b56f2c4c0b759acbecac01e557343eace38a2d05f616d6d72aa17a9fba
bioruby.gemspec	644	18.4 KB	38f5176b8f82dfe0078bede4f344ca91e0b9a407ba920295124128ae77ab7710
bioruby.gemspec.erb	644	3.95 KB	44d5c724458d60e01382ee07c40d8b610de96e11b4184d94a7c16e0975f905cf
doc/Changes-0.7.rd	644	12.8 KB	dc32dba9fc065d700458cedbb493c30ca341afcd4541e53ad81b956cb8ee2263
doc/Changes-1.3.rdoc	644	9.46 KB	804d1a8e27eba9db6f0a53589bcd3613245c841d1248319afe36412b66f394b9
doc/KEGG_API.rd	644	56.5 KB	9ee195347052b4665f91cf571c25fec39c8dad7dddad756cd158914277cdc8f9
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etc/bioinformatics/seqdatabase.ini	644	3.41 KB	0a930f4502c1dc0ca6adf2ec50c2bda9e8b213d618edb2532017e9443ab58d9a
extconf.rb	644	42 Bytes	f7e2d00da8d1364f842b3ca91d711ec3f63f2208dc4a9541c6518e2055b8348c
lib/bio.rb	644	8.66 KB	21240f0548c565f11e081da41cc7997746f3084c157fb0e6793ee0cdaf3e2591
lib/bio/alignment.rb	644	73.5 KB	d85b3b451b67e3e8f3068da46d38bb608b6c4f67cf9c9e6963e88cb828e3cbda
lib/bio/appl/blast.rb	644	15.1 KB	9c43c0d9070953e725e8b8b446b8c4e38818f18d5e5f02669f638fa3e04d274b
lib/bio/appl/blast/ddbj.rb	644	3.8 KB	9afff11a382502f7ce96271e2a97da8bce7bd26436d35480682064e91f9510ee
lib/bio/appl/blast/format0.rb	644	50.9 KB	874c1ca42863890d827fc529e44b3d61f38d9e9e78640c7c3177a55c5900d58f
lib/bio/appl/blast/format8.rb	644	1.94 KB	e5de459c710c3a819f17ed3f6e37ff708dd34b040ab063191418911d01581e0b
lib/bio/appl/blast/genomenet.rb	644	8.12 KB	c69cd85d2b867fb389f72e80549dc3f9eb619b26eafba0e130733157f0e83769
lib/bio/appl/blast/ncbioptions.rb	644	5.46 KB	c235d8a19b5ae1fab27bd916a0527055561c99ff8561e6cc0a45cb475fc3e30f
lib/bio/appl/blast/remote.rb	644	2.97 KB	f7daa9196e338119cd7da7d1b24b92e8646399a09f4a44e2940f376ff991564a
lib/bio/appl/blast/report.rb	644	22.1 KB	4d8fc7774a548438ee4faa59d7ab3a0bb00f31e7613afaa155461cc01d552d01
lib/bio/appl/blast/rexml.rb	644	4.14 KB	bfd93b105ccd8608df03e69076b80165ef72b4c7578922a779c3071ad364bf0f
lib/bio/appl/blast/rpsblast.rb	644	8.87 KB	483485c64482118487c94d4ce43b79d1b670f485bb75cd79865c1bb50b25a419
lib/bio/appl/blast/wublast.rb	644	21.6 KB	08552781b397a479e69a49c7afda31d5e933141aaae92f94f85ade8ed001d27c
lib/bio/appl/blast/xmlparser.rb	644	6.79 KB	13d8d60081ef3ee391ec2efd47855b444fb0f7bda690c8444a5c7e774357ee78
lib/bio/appl/blat/report.rb	644	17.7 KB	1c97d4b9deb9901ec00ac643fd795812aa9bf3c687fa3f89bab91b7730bb3376
lib/bio/appl/clustalw.rb	644	5.98 KB	1e51eff966b274cec63a5d10e2ac61cb598b9125163c63ac4b9a443b23c1d1d5
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lib/bio/appl/gcg/msf.rb	644	5.15 KB	fd778a350e36e6e4df600f44dbae2a78628aa0eb6d3c2de95cfb895b403ac601
lib/bio/appl/gcg/seq.rb	644	5.41 KB	4aae0d8bde943bf48bd28128c9a9206ba0d75a437420f3023c58d0035edc7f40
lib/bio/appl/genscan/report.rb	644	13.8 KB	24d8853d5d47b275d34f26003d9232a892dd54e40f5e781fad765c175d06f979
lib/bio/appl/hmmer.rb	644	2.32 KB	256eac5c26f5ca4ad9869146c7243670602daacd6ec6a6241e23585fa66f1112
lib/bio/appl/hmmer/report.rb	644	16.8 KB	3a12f9adf2ec34b0ad73c9ee61b9c3793b7644d77406e4503c8a507170ebf860
lib/bio/appl/iprscan/report.rb	644	11.7 KB	a78cda0bb4a26de10aa6408262f8eacdec6a27dcbc0d51d6a81fc7b3c3154d80
lib/bio/appl/mafft.rb	644	7.14 KB	03c8da2d5aef2ff37488e33f03a31697a9e91590840ce2221cd3cf83bc5e65dc
lib/bio/appl/mafft/report.rb	644	6.51 KB	1d4b4cfee1e66e52d7c39cb7f3086148d38b815d44f843f33a30d4042e42db33
lib/bio/appl/muscle.rb	644	1.37 KB	3913777ac7be3249cd810bc9718b5cad5c33f1baf8b81f86176551db71436bc5
lib/bio/appl/paml/baseml.rb	644	2.74 KB	57e1ba4b3a8b914c9165e6ac4c99e9c8d3229bc6bab99c4befc99e0fbe4c8808
lib/bio/appl/paml/baseml/report.rb	644	660 Bytes	9a4c272ea61596c13451459b6dcf3b386a3149ca20f972bd1b2ac0177ab82734
lib/bio/appl/paml/codeml.rb	644	8.08 KB	2963e78e496f52758c67a34e65b8377dbea10ab31141a7560cc9fa782a23d6c2
lib/bio/appl/paml/codeml/rates.rb	644	1.9 KB	12567fe7006ba7132a429618989bf69bfe47e2ffbdc9b5d86c06b0bcb91bda5d
lib/bio/appl/paml/codeml/report.rb	644	1.75 KB	6c71c6032bbdbb748ed3a5523fd4236888347e2c043b633ff71b66bf9390e483
lib/bio/appl/paml/common.rb	644	11.1 KB	6ab2be5c82923922eb79afe7ba71c40e5be8032b732ec9b5d282b9599a123372
lib/bio/appl/paml/common_report.rb	644	844 Bytes	a6bf1e607f9d94f754900c1e5d14d1a42dbaf70b9f123ef8f37cefd5bcef7163
lib/bio/appl/paml/yn00.rb	644	2.79 KB	17fc612d7db16c1035adc7979da1d611a667210fb0a6bc94f50e7b6b600649cb
lib/bio/appl/paml/yn00/report.rb	644	644 Bytes	bd7d8221c4272671781bf8f07a4405f30bb0b1ac804c0077da34cdb361678fff
lib/bio/appl/phylip/alignment.rb	644	3.36 KB	74ab9a941fc46def4555c416d5502eaf884d8fe7da4499b14a57df98c5d15ec2
lib/bio/appl/phylip/distance_matrix.rb	644	2.63 KB	24455644af9afe549c082972df362c5caa3d3eea3db29b2298f975a05d3c6626
lib/bio/appl/probcons.rb	644	1.16 KB	f8899e8ac6e99ecf62a793507c2e51c4be2fb3a69f0c44e02bec869a9e3fb867
lib/bio/appl/psort.rb	644	14.9 KB	f548e5346c5a75eb9fdb2b06c1fc32be98c2ef23fb1eb7dc8a795e058488489e
lib/bio/appl/psort/report.rb	644	13.3 KB	f5027a089a6308d50213fcdee67a4facec53f284203ef537d03009d6bcfc7cd2
lib/bio/appl/pts1.rb	644	6.31 KB	19c41b716aafbbe1adc647713837332fe70234b157a310c323d2b513b44a8d45
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lib/bio/appl/tmhmm/report.rb	644	5.02 KB	7ee548935fd2be71e334b31acde1f877ed92c2a7971d0d4e0c48f36a801178fb
lib/bio/command.rb	644	16.5 KB	cd7f9734fcfea47b6b7391b382b2a3e62d1925aca333975e4dd1492cbaaaba0e
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test/unit/bio/util/restriction_enzyme/analysis/test_sequence_range.rb	644	7.63 KB	7fcb51d6ceb04c5a616c5d6ee21ce7556f6af2212061ffbf6174879059cb824e
test/unit/bio/util/restriction_enzyme/double_stranded/test_aligned_strands.rb	644	3.25 KB	ef516f423437dc92d0b6efdf43b67eafe883e7071c166d65e28d22a2cc781155
test/unit/bio/util/restriction_enzyme/double_stranded/test_cut_location_pair.rb	644	2.09 KB	ab2ac429a5e0636d74bd59aeffde5275a3baf3a76d5e89cf3627fc18ffe33dcb
test/unit/bio/util/restriction_enzyme/double_stranded/test_cut_location_pair_in_enzyme_notation.rb	644	2.13 KB	1ad8fc012f9126a054a0e1a889a6335b34ff2a81cfd9bda468ffa1088bc18871
test/unit/bio/util/restriction_enzyme/double_stranded/test_cut_locations.rb	644	1.4 KB	b42a77ac60673c01fd8f820ed60e397ae5fa761291cc7088e8dc6e973222278f
test/unit/bio/util/restriction_enzyme/double_stranded/test_cut_locations_in_enzyme_notation.rb	644	3.05 KB	79bc94930e938f851e18629d0dfc95625d15fe961d69f524315bb7a9ff009fa2
test/unit/bio/util/restriction_enzyme/single_strand/test_cut_locations_in_enzyme_notation.rb	644	2.32 KB	32864af68090e8b269f807fc054f17aa7274f10cf86fb1a3b0103d510fa8456b
test/unit/bio/util/restriction_enzyme/test_analysis.rb	644	8.74 KB	8144ff271c4c64b57f3f6ea40df4788641713e000b1f4047ca530168602395b3
test/unit/bio/util/restriction_enzyme/test_cut_symbol.rb	644	1.24 KB	08e20242f4414fd0363ca002cf4586e299c8078ed4edbf1fbe6e0fdd4ccde440
test/unit/bio/util/restriction_enzyme/test_double_stranded.rb	644	3.76 KB	5ec33e20c92a1b3f2d169cf28e7b216004aeda09c473bca20bd20fb2d39f11e7
test/unit/bio/util/restriction_enzyme/test_single_strand.rb	644	4.77 KB	1c4e78cd9eb7666f5788dd12410d0cb2dabd20d4dfb865fc0325de16aacc4cd9
test/unit/bio/util/restriction_enzyme/test_single_strand_complement.rb	644	4.83 KB	9223a335c4c61038a5f29c9250da77646376d7c5d294891461358ad9f2374423
test/unit/bio/util/restriction_enzyme/test_string_formatting.rb	644	1.67 KB	e32c5f3f41df0831a0d205db5f9686ecfd291f49b87cd932cd6634414b057bbb
test/unit/bio/util/test_color_scheme.rb	644	953 Bytes	23afdc54f75cc0709343a6bcfd985da975f6b3b71286d87ee8d9b8a54bd95e77
test/unit/bio/util/test_contingency_table.rb	644	2.89 KB	df5677603888f79cdf506615a3700d6eb900399e74897dd7ade91fba0f27519d
test/unit/bio/util/test_restriction_enzyme.rb	644	1.09 KB	173b05cc5d5a9ca62314e18931b51bf17967d896f345a39c81ae7521ac8fd340
test/unit/bio/util/test_sirna.rb	644	6.13 KB	9beeefe6a5661a79c9c274a139ab940b274b505f825806530151cb34c996a961