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Contents
#
# bio/util/restriction_enzyme/range/sequence_range/fragment.rb -
#
# Author:: Trevor Wennblom <mailto:trevor@corevx.com>
# Copyright:: Copyright (c) 2005-2007 Midwinter Laboratories, LLC (http://midwinterlabs.com)
# License:: The Ruby License
#
# $Id: fragment.rb,v 1.6 2007/07/16 19:28:48 k Exp $
#
require 'bio/util/restriction_enzyme'
module Bio
class RestrictionEnzyme
class Range
class SequenceRange
class Fragment
attr_reader :size
def initialize( primary_bin, complement_bin )
@primary_bin = primary_bin
@complement_bin = complement_bin
end
DisplayFragment = Struct.new(:primary, :complement, :p_left, :p_right, :c_left, :c_right)
def for_display(p_str=nil, c_str=nil)
df = DisplayFragment.new
df.primary = ''
df.complement = ''
both_bins = (@primary_bin + @complement_bin).sort.uniq
both_bins.each do |item|
@primary_bin.include?(item) ? df.primary << p_str[item] : df.primary << ' '
@complement_bin.include?(item) ? df.complement << c_str[item] : df.complement << ' '
end
df.p_left = @primary_bin.first
df.p_right = @primary_bin.last
df.c_left = @complement_bin.first
df.c_right = @complement_bin.last
df
end
end # Fragment
end # SequenceRange
end # Range
end # RestrictionEnzyme
end # Bio
Version data entries
20 entries across 20 versions & 5 rubygems