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Contents
#
# bio/util/restriction_enzyme/double_stranded/cut_locations.rb - Contains an Array of CutLocationPair objects
#
# Author:: Trevor Wennblom <mailto:trevor@corevx.com>
# Copyright:: Copyright (c) 2005-2007 Midwinter Laboratories, LLC (http://midwinterlabs.com)
# License:: The Ruby License
#
# $Id: cut_locations.rb,v 1.6 2007/07/16 19:28:48 k Exp $
#
require 'bio/util/restriction_enzyme'
module Bio
class RestrictionEnzyme
class DoubleStranded
# Contains an +Array+ of CutLocationPair objects.
#
class CutLocations < Array
# CutLocations constructor.
#
# Contains an +Array+ of CutLocationPair objects.
#
# Example:
# clp1 = CutLocationPair.new(3,2)
# clp2 = CutLocationPair.new(7,9)
# pairs = CutLocations.new(clp1, clp2)
#
# ---
# *Arguments*
# * +args+: Any number of +CutLocationPair+ objects
# *Returns*:: nothing
def initialize(*args)
validate_args(args)
super(args)
end
# Returns an +Array+ of locations of cuts on the primary strand
#
# ---
# *Arguments*
# * _none_
# *Returns*:: +Array+ of locations of cuts on the primary strand
def primary
self.collect {|a| a[0]}
end
# Returns an +Array+ of locations of cuts on the complementary strand
#
# ---
# *Arguments*
# * _none_
# *Returns*:: +Array+ of locations of cuts on the complementary strand
def complement
self.collect {|a| a[1]}
end
#########
protected
#########
def validate_args(args)
args.each do |a|
unless a.class == Bio::RestrictionEnzyme::DoubleStranded::CutLocationPair
err = "Not a CutLocationPair\n"
err += "class: #{a.class}\n"
err += "inspect: #{a.inspect}"
raise ArgumentError, err
end
end
end
end # CutLocations
end # DoubleStranded
end # RestrictionEnzyme
end # Bio
Version data entries
21 entries across 21 versions & 5 rubygems