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Contents
#
# = bio/io/higet.rb - SOAP interface for HGC HiGet
#
# Copyright:: Copyright (C) 2005 Toshiaki Katayama <k@bioruby.org>
#
# $Id: higet.rb,v 1.3 2006/09/19 05:46:22 k Exp $
#
require 'bio/io/soapwsdl'
module Bio
class HGC
# == Description
#
# Interface for the HiGet service provided by Human Genome Center (HGC), Japan.
# HiGet performs full-text search against various biological databases.
#
# == References
#
# * http://higet.hgc.jp/
#
class HiGet < Bio::SOAPWSDL
SERVER_URI = "http://higet.hgc.jp/soap/higet.wsdl"
def initialize(wsdl = nil)
super(wsdl || SERVER_URI)
end
def higet_in_fasta(db, entries)
self.higet(db, entries, "-d fasta")
end
def higet_in_xml(db, entries)
self.higet(db, entries, "-d xml")
end
end
end # HGC
end # Bio
if __FILE__ == $0
begin
require 'pp'
alias p pp
rescue LoadError
end
puts ">>> Bio::HGC::HiGet"
serv = Bio::HGC::HiGet.new
serv.log = STDERR
puts "### HiFind"
puts serv.hifind("genbank", "human kinase", "-l 10")
puts "### HiGet"
puts serv.higet("genbank", "S40289", "")
puts "### HiGet (FASTA)"
puts serv.higet("genbank", "S40289", "-d fasta")
puts "### HiGet higet_in_fasta"
puts serv.higet_in_fasta("genbank", "S40289")
puts "### HiGet higet_in_xml"
puts serv.higet_in_xml("genbank", "S40289")
end
Version data entries
23 entries across 23 versions & 5 rubygems