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Size: 1.17 KB
Versions: 18
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Stored size: 1.17 KB
Contents
#
# = bio/db/kegg/reaction.rb - KEGG REACTION database class
#
# Copyright:: Copyright (C) 2004 Toshiaki Katayama <k@bioruby.org>
# License:: The Ruby License
#
# $Id: reaction.rb,v 1.6 2007/06/28 11:27:24 k Exp $
#
require 'bio/db'
module Bio
class KEGG
class REACTION < KEGGDB
DELIMITER = RS = "\n///\n"
TAGSIZE = 12
def initialize(entry)
super(entry, TAGSIZE)
end
# ENTRY
def entry_id
field_fetch('ENTRY')[/\S+/]
end
# NAME
def name
field_fetch('NAME')
end
# DEFINITION
def definition
field_fetch('DEFINITION')
end
# EQUATION
def equation
field_fetch('EQUATION')
end
# RPAIR
def rpairs
unless @data['RPAIR']
@data['RPAIR'] = fetch('RPAIR').split(/\s+/)
end
@data['RPAIR']
end
# PATHWAY
def pathways
lines_fetch('PATHWAY')
end
# ENZYME
def enzymes
unless @data['ENZYME']
@data['ENZYME'] = fetch('ENZYME').scan(/\S+/)
end
@data['ENZYME']
end
end # REACTION
end # KEGG
end # Bio
if __FILE__ == $0
entry = ARGF.read
rn = Bio::KEGG::REACTION.new(entry)
p rn.entry_id
p rn.name
p rn.definition
p rn.equation
p rn.rpairs
p rn.pathways
p rn.enzymes
end
Version data entries
18 entries across 18 versions & 5 rubygems