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Contents
#
# test/unit/bio/appl/sosui/test_report.rb - Unit test for Bio::SOSUI::Report
#
# Copyright:: Copyright (C) 2005 Mitsuteru Nakao <n@bioruby.org>
# License:: The Ruby License
#
# $Id: test_report.rb,v 1.5 2007/04/05 23:35:43 trevor Exp $
#
require 'pathname'
libpath = Pathname.new(File.join(File.dirname(__FILE__), ['..'] * 5, 'lib')).cleanpath.to_s
$:.unshift(libpath) unless $:.include?(libpath)
require 'test/unit'
require 'bio/appl/sosui/report'
module Bio
bioruby_root = Pathname.new(File.join(File.dirname(__FILE__), ['..'] * 5)).cleanpath.to_s
test_data = Pathname.new(File.join(bioruby_root, 'test', 'data', 'SOSUI')).cleanpath.to_s
SOSUIReport = File.open(File.join(test_data, 'sample.report')).read
class TestSOSUIReportConst < Test::Unit::TestCase
def test_delimiter
assert_equal("\n>", Bio::SOSUI::Report::DELIMITER)
end
def test_rs
assert_equal("\n>", Bio::SOSUI::Report::RS)
end
end
class TestSOSUIReport < Test::Unit::TestCase
def setup
@obj = Bio::SOSUI::Report.new(SOSUIReport)
end
def test_entry_id
assert_equal('Q9HC19', @obj.entry_id)
end
def test_prediction
assert_equal('MEMBRANE PROTEIN', @obj.prediction)
end
def test_tmhs
assert_equal(Array, @obj.tmhs.class)
assert_equal(Bio::SOSUI::Report::TMH, @obj.tmhs[0].class)
end
def test_tmh
assert_equal(7, @obj.tmhs.size)
end
end # class TestSOSUIReport
class TestSOSUITMH < Test::Unit::TestCase
def setup
@obj = Bio::SOSUI::Report.new(SOSUIReport).tmhs.first
end
def test_range
assert_equal(31..53, @obj.range)
end
def test_grade
assert_equal('SECONDARY', @obj.grade)
end
def test_sequence
assert_equal('HIRMTFLRKVYSILSLQVLLTTV', @obj.sequence)
end
end # class TestSOSUITMH
end
Version data entries
18 entries across 18 versions & 5 rubygems