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Contents
#
# bio/util/color_scheme/strand.rb - Color codings for strand propensity
#
# Author:: Trevor Wennblom <mailto:trevor@corevx.com>
# Copyright:: Copyright (c) 2005-2007 Midwinter Laboratories, LLC (http://midwinterlabs.com)
# License:: The Ruby License
#
# $Id: strand.rb,v 1.5 2007/04/05 23:35:41 trevor Exp $
#
require 'bio/util/color_scheme'
module Bio::ColorScheme
class Strand < Score #:nodoc:
#########
protected
#########
def self.score_to_rgb_hex(score, min, max)
percent = score_to_percent(score, min, max)
rgb_percent_to_hex(percent, percent, 1.0-percent)
end
@colors = {}
@scores = {
'A' => 0.83,
'C' => 1.19,
'D' => 0.54,
'E' => 0.37,
'F' => 1.38,
'G' => 0.75,
'H' => 0.87,
'I' => 1.6,
'K' => 0.74,
'L' => 1.3,
'M' => 1.05,
'N' => 0.89,
'P' => 0.55,
'Q' => 1.1,
'R' => 0.93,
'S' => 0.75,
'T' => 1.19,
'U' => 0.0,
'V' => 1.7,
'W' => 1.37,
'Y' => 1.47,
'B' => 0.72,
'X' => 1.0,
'Z' => 0.74,
}
@min = 0.37
@max = 1.7
@scores.each { |k,s| @colors[k] = score_to_rgb_hex(s, @min, @max) }
@colors.default = 'FFFFFF' # return white by default
end
end
Version data entries
33 entries across 33 versions & 5 rubygems