| bin/create_graphs.rb | 644 | 0 | 0 | | | 831 Bytes | da42036138bd1fc7960385fbd3400358705c21086f7225a7b4c15e3af9df0040 |
| bin/extract_seqs.rb | 644 | 0 | 0 | | | 788 Bytes | beacbe318cce4db639b30239d1336e77ae303ad822df70123f4bf66e63d02baa |
| bin/extract_seqs_from_fasta.rb | 755 | 0 | 0 | | | 937 Bytes | a40a5f5b419616ddbdd71a4e07f4071875e8dcec37824d6f51e36bc28199cb1e |
| bin/extract_seqs_from_fastq.rb | 755 | 0 | 0 | | | 696 Bytes | 5d369dc36f9ea7a525a7e8c7a4cd604fd66aa26d4cf33ee4f6fec208a610fe91 |
| bin/fasta2fastq.rb | 755 | 0 | 0 | | | 652 Bytes | 416876b8c2a0d7e0ebe9efebbfa8e2fa29cbc2253022cc29fefad2961b9608ba |
| bin/fastq2fasta.rb | 755 | 0 | 0 | | | 506 Bytes | 0dccaf797303144b16e952f4c8ee3ff0354fd22c5ecb1d42b29714b3aaae4158 |
| bin/gen_qual.rb | 755 | 0 | 0 | | | 579 Bytes | a597d14a09ad830d3f2b22cbc7439be640efe351944584e134d5a27bf9013e98 |
| bin/get_seq.rb | 755 | 0 | 0 | | | 577 Bytes | 157ecb7a25555aea9190ba49391e5c3bbdf2f29de877fdcda0fc3a6f28af4671 |
| bin/group_by_range.rb | 755 | 0 | 0 | | | 155 Bytes | 199231c91cc9cfc94dd9aa309b4c678859fbd1d47eae5636e827966284342e5b |
| bin/join_ilumina_paired.rb | 755 | 0 | 0 | | | 2.26 KB | a6fc7149c4d1e67d343b268ed90fb42fcfd33ac17e771d5c89357bcf7c280b9e |
| bin/parse_amplicons.rb | 644 | 0 | 0 | | | 2.04 KB | e8ed262533cb3e2052038ce375d51fe4959c3b98f051fd66ade295a3af4305c9 |
| bin/parse_json_results.rb | 755 | 0 | 0 | | | 1.12 KB | 5b68b7ea5cb6dc581334457e1d9b59779ba0af91134eecd938d92e2a861b0308 |
| bin/parse_params.rb | 755 | 0 | 0 | | | 1.37 KB | 59156104ca34c78128d630663e961d9818fba558877ed78c622a2c7198f55c09 |
| bin/resume_clusters.rb | 755 | 0 | 0 | | | 608 Bytes | 47b5609cbbfb2a45df45233b930268f5695005c5c12aa82ff356451a9137ad63 |
| bin/resume_rejected.sh | 755 | 0 | 0 | | | 205 Bytes | 658dff7257f10996e55cd65308cd119d5bc66a441adfe26d88ab1575f432332d |
| bin/reverse_paired.rb | 755 | 0 | 0 | | | 674 Bytes | 331c7deb28603686800c8073d8bf67369592a0d99a84ddb10691f8fdf172d6ba |
| bin/seqtrimnext | 755 | 0 | 0 | | | 10.5 KB | 57eaeeec86ce8e5d1276f30949c1827743fb1f7662f518b0dff6b8963fdb4400 |
| bin/split_fastq.rb | 755 | 0 | 0 | | | 591 Bytes | 1085cb71b2324154ac9cc3e79a1c91aa2698090a193e9b58d9546972602be7fa |
| bin/split_ilumina_paired.rb | 755 | 0 | 0 | | | 1.21 KB | 0efde893f4e263d33341a411ca5b02fcc987a569d9415ca1a122817ad45b0a09 |
| bin/split_paired.rb | 755 | 0 | 0 | | | 1.27 KB | 21a2ad25f272e965a9665ba22d5c77232865ca5923bace9a7ca6cae8b9cbdc87 |
| lib/seqtrimnext/actions/action_ab_adapter.rb | 644 | 0 | 0 | | | 780 Bytes | d6558e8ea5e78db24f818c8906fbc0a2329c7e970fe311a4a49c97443c83ec3f |
| lib/seqtrimnext/actions/action_ab_far_adapter.rb | 644 | 0 | 0 | | | 782 Bytes | 3e57334aa95189ecf4cf30eed1d967a61338162981e4b62eefd29aeba6ad23b0 |
| lib/seqtrimnext/actions/action_ab_left_adapter.rb | 644 | 0 | 0 | | | 783 Bytes | 9156d919c039b619d029a0710babfd4b7068ca2b0bfcf7fb0ca1aa49b70d8f84 |
| lib/seqtrimnext/actions/action_empty_insert.rb | 644 | 0 | 0 | | | 582 Bytes | 40f8da8c8d51fbc81535e465256cff28dffba96eeb079137917338c0a35ccba1 |
| lib/seqtrimnext/actions/action_ignore_repeated.rb | 644 | 0 | 0 | | | 570 Bytes | fcdae96fb410b08c6d1bf40a8c1c9da7b89cb924ddb96a93899ed40fb4806f3a |
| lib/seqtrimnext/actions/action_indetermination.rb | 644 | 0 | 0 | | | 776 Bytes | 3ce9171df7e27f6338f7b382d917114656cce1b582aa5c5010db5febef2d23d1 |
| lib/seqtrimnext/actions/action_induced_low_complexity.rb | 644 | 0 | 0 | | | 680 Bytes | cc1b4c507677c9c755caf675ef5cbc19953101a2932ee6356d0e4ea25be9322a |
| lib/seqtrimnext/actions/action_insert.rb | 644 | 0 | 0 | | | 862 Bytes | fd725f751493445b3b2e2a39bf1069e3daa99ff6896d9690c74d4b01fdade5b9 |
| lib/seqtrimnext/actions/action_is_contaminated.rb | 644 | 0 | 0 | | | 770 Bytes | 713d00244a29d926e4d7ca39176cae7829ccecc58fe63de0a5ecc883d77ca9d8 |
| lib/seqtrimnext/actions/action_key.rb | 644 | 0 | 0 | | | 767 Bytes | bcab4e9c0c6605a5141ac81c2a9b88145a5e7da4da9e4ca28746a1054beb644a |
| lib/seqtrimnext/actions/action_left_adapter.rb | 644 | 0 | 0 | | | 772 Bytes | 8125a5a3519bd79c673504debad0a283712d05ad3e8c87f1a81158848b130613 |
| lib/seqtrimnext/actions/action_left_primer.rb | 644 | 0 | 0 | | | 227 Bytes | d80fe5d487891751ebc00cecfe95405306a2c5a37299145a5c65c9602b4b7377 |
| lib/seqtrimnext/actions/action_linker.rb | 644 | 0 | 0 | | | 769 Bytes | ccd68d6473a5eddac81a569e862b584c29f7ab0e37f01b1f4f7c6e73ae08b5e9 |
| lib/seqtrimnext/actions/action_low_complexity.rb | 644 | 0 | 0 | | | 699 Bytes | a8c2ecb3ab9a9bc5b378acb2a00bea3e1b61fde67f02c77ac0b358b6fcaab026 |
| lib/seqtrimnext/actions/action_low_high_size.rb | 644 | 0 | 0 | | | 830 Bytes | 85d6369716857d75e678c3677ae5e614938d23959292aecc7990d1fe1e910498 |
| lib/seqtrimnext/actions/action_low_quality.rb | 644 | 0 | 0 | | | 837 Bytes | 28ff4762e806fe790ce497f02c4b48dd8255a01814a94704954bfbc24cfbaf11 |
| lib/seqtrimnext/actions/action_mid.rb | 644 | 0 | 0 | | | 767 Bytes | 7cf53229f9df32babd2179e3a92fa945d97dba35f6ccd3605300efe473ede048 |
| lib/seqtrimnext/actions/action_multiple_linker.rb | 644 | 0 | 0 | | | 640 Bytes | 9eeac7234fa235117805bf336d8aca7a69c605aad8ac8c5121d278a3ec651286 |
| lib/seqtrimnext/actions/action_paired_reads.rb | 644 | 0 | 0 | | | 823 Bytes | 9306a03ff91bb60eb38e9f28098e03fa40d109077d886376b77648deb2259a12 |
| lib/seqtrimnext/actions/action_poly_a.rb | 644 | 0 | 0 | | | 669 Bytes | 5422b5eda081658cf08c12c13bbdc1152d2f912bef800c592919a24f8f6eebd0 |
| lib/seqtrimnext/actions/action_poly_t.rb | 644 | 0 | 0 | | | 665 Bytes | 9e6ac6e29ae23e5c84c9bb5208480b7c14dd2a6088319bb9ed2ea6622fbe598f |
| lib/seqtrimnext/actions/action_rem_adit_artifacts.rb | 644 | 0 | 0 | | | 786 Bytes | 0958d3517d7f4d4114756b50b1f10f964afce5fcf1b4b6da113d722835e1f3c4 |
| lib/seqtrimnext/actions/action_right_adapter.rb | 644 | 0 | 0 | | | 731 Bytes | 84309575436bd515dc2adb38b87fa3c1ad30a8906a9d582c6bf5ffd2ede08c91 |
| lib/seqtrimnext/actions/action_right_primer.rb | 644 | 0 | 0 | | | 458 Bytes | a12a47edba18c98bc4af2cfe22e5abd75aa9bcc0c453433807334d839211d13a |
| lib/seqtrimnext/actions/action_short_insert.rb | 644 | 0 | 0 | | | 834 Bytes | ee2a0e100236f23036f9328f5e6a560a24d62024d6f6b61d532de0dc4ce0b4b6 |
| lib/seqtrimnext/actions/action_unexpected_poly_t.rb | 644 | 0 | 0 | | | 675 Bytes | b469c8e9a8af42f73a64d1c988007abccde93841200e805f0f822a560031b0e6 |
| lib/seqtrimnext/actions/action_unexpected_vector.rb | 644 | 0 | 0 | | | 768 Bytes | d2a9954859cb61f29c1631a2225ea7b27edeffec35d0da119ded060fa0bc079e |
| lib/seqtrimnext/actions/action_vectors.rb | 644 | 0 | 0 | | | 759 Bytes | 9b465bb6c9aea667d6ff8ba0771956faa1bac5fda8decc5d00de76af3e2de538 |
| lib/seqtrimnext/actions/seqtrim_action.rb | 644 | 0 | 0 | | | 2.95 KB | 3aebdda3958609d19af92407cd1104e2a1d073b55da99d76232f6868fb78cc3b |
| lib/seqtrimnext/classes/action_manager.rb | 644 | 0 | 0 | | | 1.44 KB | bfa3af4fa04965e04625a9827becf2436008774f905cda58f0393c1299e6829c |
| lib/seqtrimnext/classes/em_classes/seqtrim_work_manager.rb | 644 | 0 | 0 | | | 6.98 KB | 84a6878b5df5ef99500d2c6d76c9bfe54e9b347ff8bf66448d88c4663962b47b |
| lib/seqtrimnext/classes/em_classes/seqtrim_worker.rb | 644 | 0 | 0 | | | 7.98 KB | 24a4b462bd55365106aac41fd9f1eecda9bbcf9edc413e84415ae6df346d4eb3 |
| lib/seqtrimnext/classes/extract_stats.rb | 644 | 0 | 0 | | | 6.23 KB | 4c99cc8972c0a42626884795690ed94ea0b044a65f1029b837cc8e5865bc5da0 |
| lib/seqtrimnext/classes/gnu_plot_graph.rb | 644 | 0 | 0 | | | 3.79 KB | 6f9c155a17990b8190727cd245642493f850ee6939f5365ce6272a51641efddb |
| lib/seqtrimnext/classes/graph_stats.rb | 644 | 0 | 0 | | | 1.96 KB | 296499e3a7917b23d1e4b8a40d4322f947a8c274923ee1aa9aff5f38c2b4d606 |
| lib/seqtrimnext/classes/install_database.rb | 644 | 0 | 0 | | | 1.03 KB | c03569e3659f72774a4bf04c56d8526867db5792ca7badba901adefbd5e161a4 |
| lib/seqtrimnext/classes/install_requirements.rb | 644 | 0 | 0 | | | 3.22 KB | 09fa16638eb47744e4c39b4719cc4011a5508fa0aabf21d1ba189b7debcdc38d |
| lib/seqtrimnext/classes/list_db.rb | 644 | 0 | 0 | | | 800 Bytes | 4ed4cd4f7ba6479c32d9fdc17a47f853bd1f9cf93dc37ad78be52b6768c4862e |
| lib/seqtrimnext/classes/make_blast_db.rb | 644 | 0 | 0 | | | 3.6 KB | bb1873fc932056b3afc339f831f83d14602a2ebec0336ee778a4bfb5c4fcae2a |
| lib/seqtrimnext/classes/one_blast.rb | 644 | 0 | 0 | | | 587 Bytes | e211e71d1d01463b256d784e3802b1932a4278fe0e2b393ff0a4b82dd4c74f52 |
| lib/seqtrimnext/classes/params.rb | 644 | 0 | 0 | | | 11.8 KB | 428e0434caa30e55363c957e612e0c3a09a1fc45f55b8a3da7946d7058430a8b |
| lib/seqtrimnext/classes/piro.rb | 644 | 0 | 0 | | | 2.07 KB | 75f5b6295cf9da5233714e642ba0792715fdf0b0895117a9cb523ca59f1ebfc0 |
| lib/seqtrimnext/classes/plugin_manager.rb | 644 | 0 | 0 | | | 4.29 KB | 2bb78482881cb28e2fabd56f6c103d60b8fec0c4279ebb3e7a7f1d333fe65a4a |
| lib/seqtrimnext/classes/scan_for_restr_site.rb | 644 | 0 | 0 | | | 4.22 KB | 9e45cd33827aed3b4ecddfe39f0dc008fa6bbcc8b355e57c03ff79d970383563 |
| lib/seqtrimnext/classes/scbi_stats.rb | 644 | 0 | 0 | | | 1009 Bytes | 7c45baf3430284f4616b02160033d20e2fcf46df1d6de5a40539221115c634de |
| lib/seqtrimnext/classes/seqtrim.rb | 644 | 0 | 0 | | | 9.39 KB | 2d1458f4546f3a7984d1767fe2985c6dbbf9dac74da39fbf2d618d25d0f5471d |
| lib/seqtrimnext/classes/sequence.rb | 644 | 0 | 0 | | | 1.35 KB | 348442b575c6b4735982612bfb9cda81769d7d84054adeb30e7781986b6cb561 |
| lib/seqtrimnext/classes/sequence_group.rb | 644 | 0 | 0 | | | 922 Bytes | af8ede2cdf9334ea81ea02e41ea79c20d5e9b1b4cf9978ebb8c2797a03910de4 |
| lib/seqtrimnext/classes/sequence_with_action.rb | 644 | 0 | 0 | | | 15.5 KB | 85c58c60053abfc35969e995ee107bd4c33b18cc5c00903f896d9f6d39436bdb |
| lib/seqtrimnext/plugins/plugin.rb | 644 | 0 | 0 | | | 6.46 KB | 846fab118a4b3f5fa24508523c6a59d0744b91d12c6469405f9c8fd05a937cbc |
| lib/seqtrimnext/plugins/plugin_ab_adapters.rb | 644 | 0 | 0 | | | 6.12 KB | 5dba141bb7680d8b03cb21e8b70acb2ab9c5f81b6a734098434d9211d3fedd16 |
| lib/seqtrimnext/plugins/plugin_adapters.rb | 644 | 0 | 0 | | | 5.44 KB | a677cc2848e16eda3f90ed09cd0539fe80d42bb679016194a5747cc5b6d5083d |
| lib/seqtrimnext/plugins/plugin_amplicons.rb | 644 | 0 | 0 | | | 6.1 KB | b17fe41edfe0c77e1b87b714610a583d5e158a3d4c6ff39b489f6627595edc9d |
| lib/seqtrimnext/plugins/plugin_contaminants.rb | 644 | 0 | 0 | | | 7.41 KB | 0fec5c4a6faff9892d3d675227e288db1af03a2c533b3eaf427c711828548acb |
| lib/seqtrimnext/plugins/plugin_extract_inserts.rb | 644 | 0 | 0 | | | 15.4 KB | 04df4712bed89b01fb8a2bc36d8add50c59be19c240049745ef06da0c5d26c0c |
| lib/seqtrimnext/plugins/plugin_find_poly_at.rb | 644 | 0 | 0 | | | 10.5 KB | 342f00f60c86093fe8b24ded4b0655d7fe6cd6480fcedb112f2e70d6beb8a24e |
| lib/seqtrimnext/plugins/plugin_ignore_repeated.rb | 644 | 0 | 0 | | | 3.31 KB | a38b19be43269dd58c546f18ca1d95eb51286a81db8dbafb3622de739857e656 |
| lib/seqtrimnext/plugins/plugin_indeterminations.rb | 644 | 0 | 0 | | | 5.2 KB | bbb1c6ce4359997099ffaad25c50ed440b5d5470229126a490cedc1ccdc9ba4f |
| lib/seqtrimnext/plugins/plugin_key.rb | 644 | 0 | 0 | | | 1.81 KB | 301305de2ce60c66b2d1f851749745b6bd7bb0ca6ce07b89729fd66ac0369f9d |
| lib/seqtrimnext/plugins/plugin_linker.rb | 644 | 0 | 0 | | | 8.12 KB | 3d1dfb9af88113bb80f5df9c0643effe5f3d74383ea70e6f644087a6ca0f9be5 |
| lib/seqtrimnext/plugins/plugin_low_complexity.rb | 644 | 0 | 0 | | | 2.16 KB | a9e3985f68337993f3e35f0d9e96abc5e23b497a36a6ab547b6df88d9dd132fd |
| lib/seqtrimnext/plugins/plugin_low_high_size.rb | 644 | 0 | 0 | | | 2.24 KB | 5be0fc7ba012bf95b0eee5dfc97c7184cc8fb0451825ef3d807ce942b75d4cae |
| lib/seqtrimnext/plugins/plugin_low_quality.rb | 644 | 0 | 0 | | | 14 KB | d73a24265b50885cdc554c9194fc780ac1d12dfaadebc2398d993e8136669008 |
| lib/seqtrimnext/plugins/plugin_mids.rb | 644 | 0 | 0 | | | 7.36 KB | 85f711104353550a3c9afda49aca2a55c5d66db8896336092f1e0f132eb1a6ac |
| lib/seqtrimnext/plugins/plugin_rem_adit_artifacts.rb | 644 | 0 | 0 | | | 6.03 KB | cf17e3c925e144ac7122f9a43c90909f6258dd35576549df30fd6c89feab8055 |
| lib/seqtrimnext/plugins/plugin_short_insert.rb | 644 | 0 | 0 | | | 7.62 KB | 8c2ce7738ced5ac4a939a13f03988d0e2f18cbb946a3aa6e235b50d60c0e419c |
| lib/seqtrimnext/plugins/plugin_vectors.rb | 644 | 0 | 0 | | | 7.6 KB | d92941d34136c73e6f176096036f35d2d479b2d14d2be58a866de488bf873ae2 |
| lib/seqtrimnext/templates/amplicons.txt | 644 | 0 | 0 | | | 546 Bytes | 3512cc06cafa6f73042103d204eda00a377f4d8bd56a1159c978c83427f0fdef |
| lib/seqtrimnext/templates/genomics_454.txt | 644 | 0 | 0 | | | 267 Bytes | 9ac89b8121f68302a8670e980823108677709755ed57467dffd2adc81a2e4c21 |
| lib/seqtrimnext/templates/genomics_454_with_paired.txt | 644 | 0 | 0 | | | 280 Bytes | e7b412c681fe8e55557367b667039d96ce9250936ab8840588b4bf1db124a758 |
| lib/seqtrimnext/templates/low_quality.txt | 644 | 0 | 0 | | | 221 Bytes | fa15325667347b36e56015266beefa8f00897e366487d887b443bb3acb40dd5b |
| lib/seqtrimnext/templates/low_quality_and_low_complexity.txt | 644 | 0 | 0 | | | 241 Bytes | 859965bf24375f9a697af81ebca763c2af9b3d1b8da0bf4ee1700162c91a0919 |
| lib/seqtrimnext/templates/transcriptomics_454.txt | 644 | 0 | 0 | | | 333 Bytes | be525d1ced7d0e777b065a28f4322bffa2d42797bafc3da5758fd7a9ccfb0f5a |
| lib/seqtrimnext/templates/transcriptomics_plants.txt | 644 | 0 | 0 | | | 378 Bytes | 8921c95b60db79dc6f1fe46267da038497d5a630844009557e8b3ffd976ca2c2 |
| lib/seqtrimnext/utils/extract_samples.rb | 644 | 0 | 0 | | | 1.23 KB | 743bae369aab57a4b3cf61d397ed03ec498706d5f6c02b5f9fa002a7ef155ccf |
| lib/seqtrimnext/utils/fasta2xml.rb | 755 | 0 | 0 | | | 1.48 KB | e959f2323640413e45f545b5c78fb937c2b6672000c948886bcf024a434e9382 |
| lib/seqtrimnext/utils/global_match.rb | 644 | 0 | 0 | | | 1.12 KB | eda69bf0400b01cb4de839a533a8635c7efcedcd0d5754656a8fe3369c2f82f8 |
| lib/seqtrimnext/utils/hash_stats.rb | 644 | 0 | 0 | | | 529 Bytes | cff5c4b35304173a0f4c1aed89ab09ae37ed30a6838a9ec7043d239de73dfe03 |
| lib/seqtrimnext/utils/json_utils.rb | 755 | 0 | 0 | | | 840 Bytes | d7797ad57aa054736c4411c4138d3d654dacf9f3fbaea0e3fb22faab50a49d8a |
| lib/seqtrimnext/utils/load_fasta_names_in_hash.rb | 644 | 0 | 0 | | | 722 Bytes | b9aa1202ef006800c85101f31822a8fecf622f1342e63410fe930ee95708b446 |
| lib/seqtrimnext/utils/load_qual_in_hash.rb | 644 | 0 | 0 | | | 717 Bytes | 9934588078f725849e70d675a92b787bc08b5b690ad6cc858fd7c4cba536d121 |
| lib/seqtrimnext/utils/recover_mid.rb | 644 | 0 | 0 | | | 2.27 KB | efc1e7c59622b802f1bc3d76a516739d8ab2ca84f5b339bb17cc2dbb35320e38 |
| lib/seqtrimnext/utils/string_utils.rb | 644 | 0 | 0 | | | 1015 Bytes | ea28310ee44daf38d063cce68c526861a5b139402d4317a1ed687ca0e8af485b |
| lib/seqtrimnext.rb | 644 | 0 | 0 | | | 980 Bytes | ad578967979606783a8b448367a25c30f43138960a37b1701e6d66a61f1dce66 |
| History.txt | 644 | 0 | 0 | | | 119 Bytes | 310db934e1b3e23c46a9f6a480ff497cc28502ae15df3d99be6cc3411d3252d7 |
| Manifest.txt | 644 | 0 | 0 | | | 4.21 KB | cebd5bb32475066494e96e8b64d836fac447519c31b8f28082bb8b4b05daec42 |
| PostInstall.txt | 644 | 0 | 0 | | | 254 Bytes | 007f23398fa30e243c98b740b77d217d9202c0ad8bbac087a9d174cd862e43ff |
| Rakefile | 644 | 0 | 0 | | | 1.4 KB | 8b9cd83a8569bed7dea78e5eab9d7c1b6acc98d3e7d7f0c329fc7e37ac003752 |
| README.rdoc | 644 | 0 | 0 | | | 6.23 KB | 44267e479270006326d325e4b42a916b0899d32e3e6409548435abbc9def3d6e |
| script/console | 755 | 0 | 0 | | | 444 Bytes | a7bc8ad3af78caf50e6cbc49cb2ee29435b0c2496b45b4714836c3ba80a8558a |
| script/destroy | 755 | 0 | 0 | | | 387 Bytes | cb0bfb7f3ac2cdd6c819b697358dca23045da44e87c17a1aaeb1ab4728650ea0 |
| script/generate | 755 | 0 | 0 | | | 389 Bytes | 7a1a3b54a1bf128119371bc3295119bfbe8af9eed81917f57047a231f2ac3477 |
| test/test_helper.rb | 644 | 0 | 0 | | | 94 Bytes | 2088de1eef09a84b4b682a1b4edff106e8b5679ebb3c6a31052dc37326ff0b31 |
| test/test_seqtrimnext.rb | 644 | 0 | 0 | | | 173 Bytes | 5d237a0fb11b4c1741c2c1590b5a56d364ecec189a29bcd7b9da0ad462d57870 |