Sha256: 28ff4762e806fe790ce497f02c4b48dd8255a01814a94704954bfbc24cfbaf11
Contents?: true
Size: 837 Bytes
Versions: 11
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Stored size: 837 Bytes
Contents
require "seqtrim_action"
########################################################
# Author: Almudena Bocinos Rioboo
#
# Defines the main methods that are necessary to execute PluginActionLowHighSize
# Inherit: Plugin
########################################################
class ActionLowQuality < SeqtrimAction
def initialize(start_pos,end_pos)
super(start_pos,end_pos)
@cut =false
end
# def apply_to(seq)
#
# # seq.seq_fasta = seq.seq_fasta.slice(start_pos,end_pos)
# $LOG.debug " Applying #{self.class} to #{seq.seq_name} . This sequence will be ignored due to low quality "
# #delete sequence if it was created
#
#
# end
def apply_decoration(char)
return char.downcase.on_white
end
end
Version data entries
11 entries across 11 versions & 1 rubygems