Sha256: c03569e3659f72774a4bf04c56d8526867db5792ca7badba901adefbd5e161a4
Contents?: true
Size: 1.03 KB
Versions: 16
Compression:
Stored size: 1.03 KB
Contents
require 'open-uri'
class InstallDatabase
def initialize(type,db_path)
types=['core','cont_bacteria','cont_fungi','cont_mitochondrias','cont_plastids','cont_ribosome']
if types.include?(type)
if !File.exists?(db_path)
FileUtils.mkdir_p(db_path)
end
remote_db_url="http://www.scbi.uma.es/downloads/#{type}_db.zip"
local_path=File.join(db_path,'core_db.zip')
puts "Install databases: #{type}"
download_and_unzip(remote_db_url,local_path)
else
puts "Unknown database #{type}"
puts "Available databases:"
puts types.join("\n")
end
end
def download_and_unzip(from_url,to_file)
puts "Downloading databases from #{from_url} to #{to_file}"
open(to_file, "w+") { |f| f.write(open(from_url).read)}
puts "Unzipping #{to_file}"
# unzip and remove
# `cd #{File.dirname(to_file)};unzip #{to_file}; rm #{to_file}`
`cd #{File.dirname(to_file)};unzip #{to_file}; rm #{to_file}`
end
end
Version data entries
16 entries across 16 versions & 1 rubygems