jandot-bio-1.2.1

https://rubygems.org

id: 689432

number: 1.2.1

platform: ruby

spec_sha256: 7de87443a329c0c4d3242a9583ffecd169006d40fb4107992c30bba340a3cd64

sha256: 592fdc936d86b6b51da49d39d39e9863a7b08f7e64747d7e97b8d9c3ae54df1a

created_at: 2024-05-13 08:24:08 UTC

updated_at: 2024-06-10 01:28:05 UTC

position: 0

version_data_entries_count: 334

uploaded_at: 2014-08-11 03:22:52 UTC

indexed: true

has_extensions:

extensions:

Gem size: 676 KB

Version Data Entries

Total: 334

Unpacked size: 2.74 MB

Full Name	Mode	Size	SHA
lib/bio/shell/demo.rb	444	4.9 KB	4f3a431e2485bdd19137a38e19ba5fa894c931f82b005083608c4f06e6629af3
sample/pmfetch.rb	623	1.16 KB	3d7b670f0433eaa8f3aafcbdc14c50fda44ce4e8b36ac1c56bb48147b2f16bb8
bin/br_pmfetch.rb	623	9.93 KB	32e4f61ffa9fea3ca79329241da004f5d81ffd7379cee7b3e5fa0d4b34649e46
bin/br_biogetseq.rb	623	799 Bytes	2ceea85a863d416213b4d4e1aebdb53cfbf3a6fd84fdb9f36c7a50a85bb32a60
bin/br_bioflat.rb	623	6.7 KB	a642f55f21661cd3be92051649d6e9ed1f5ff7a9ae1afb59d076c189844d6189
bin/br_biofetch.rb	623	1.23 KB	c851dd31e33f68abf5d8af990db7e30ecb9c06af47a66034743e57784972a067
bin/bioruby	623	924 Bytes	a63d7ce0890c96f697a289f57f0dbf764b3b6692d6a49e660d527f1674a9872f
doc/Tutorial.rd.ja	444	82.3 KB	3f3ab5e9eb34a40d237518a4834963e72665c9d798861e243b2024c61f71f5ef
doc/KEGG_API.rd.ja	444	54.5 KB	b8393f5e262b31e2acc94b1eda50eeba2d69ee7f4d8c9a9857680b95148fb243
doc/Tutorial.rd	444	42.3 KB	a56021862b49060383c318f8f00b327b9031e388afebce49ebe723b6ae28ff3b
doc/KEGG_API.rd	444	56.5 KB	9ee195347052b4665f91cf571c25fec39c8dad7dddad756cd158914277cdc8f9
doc/Changes-0.7.rd	444	12.6 KB	abbb3f93d8667d7f65d656454ddc93715adc55de6e9771fb9082542b120dbb94
etc/bioinformatics/seqdatabase.ini	444	3.41 KB	0a930f4502c1dc0ca6adf2ec50c2bda9e8b213d618edb2532017e9443ab58d9a
lib/bio/db/pdb/residue.rb	444	4.16 KB	8d7e598249f290913801d1957459e2f307cd39d72f8619775610d13f7d086d67
lib/bio/db/pdb/chain.rb	444	5.58 KB	78e500a2b9a6ac23cd70cd3909fe4a2b56f047cd8315b827bb599ecd68f704d5
lib/bio/db/pdb/model.rb	444	3.58 KB	a138edb845da576744c234294fa74f9ca0d41e800beec975a2d7f4367b619595
lib/bio/db/pdb/pdb.rb	444	62.6 KB	e757f1ebea0ecad925d75986878218685a97b2da0f360b19ef55c3cef1a743ed
lib/bio/db/pdb/chemicalcomponent.rb	444	6.67 KB	498ea530e871471899667b03b944151b291d662c51b0732a44ace5386f492211
lib/bio/db/pdb/atom.rb	444	1.7 KB	62476bbd1df9808017c5728cc4d18d2a492ed6e89c74196dcf41a4a85c94265e
lib/bio/db/pdb/utils.rb	444	10.1 KB	83cb0adebb7e7bec06b425f627e3b05d9df562b76ca24b9451a6441e0e99bd42
lib/bio/db/embl/uniprot.rb	444	951 Bytes	af4e716ecf160c6d3b1e48b8bdba8e449f388d0babc972a77f76d5294bea7d9a
lib/bio/db/embl/common.rb	444	9.03 KB	497833b67ca55184da83c0a05bf32995cb594c795ba53f3c7723374d7e4362cc
lib/bio/db/embl/embl.rb	444	8.84 KB	bf1fe941b747183395e4a68a33a88d80d24a9ebe7e39455eea19b64068c5ddc9
lib/bio/db/embl/sptr.rb	444	34.8 KB	d01b80ed7cce5c16ed5a590d8f24ccc74e744827efc784f1141a9f38bab92658
lib/bio/db/embl/trembl.rb	444	1010 Bytes	75b1c109bfff4503e62e67c940d16231d736ec49e604dcffa43c009444f19477
lib/bio/db/embl/swissprot.rb	444	1014 Bytes	a48b17fc793812516ddf692232b14e62e0f87bd8a9dfe3a5631eda69a5848ae3
lib/bio/db/kegg/kgml.rb	444	5.86 KB	e434a73f1002214e20d3be9691f0620156b0cde3908bfa0bdea0601521fe53f4
lib/bio/db/kegg/compound.rb	444	1.95 KB	4c11bf2f116ea84b70be7f883ebe7769910c65fae9a9d43fb6b84d058aead2e6
lib/bio/db/kegg/drug.rb	444	1.26 KB	fe194e0a087fbbcb2fa1d09f753ab18ab320c79f026078edc6ad9182893c6572
lib/bio/db/kegg/glycan.rb	444	2.81 KB	1ef95eb35b032708c735c99042ba18c88a4a9c53833886d30b83e87b6e14b457
lib/bio/db/kegg/brite.rb	444	639 Bytes	88a3057e5f31e1faead4b282b0a6ff1a1806f388cde96869602eccd834ce6e9b
lib/bio/db/kegg/genes.rb	444	4.85 KB	4b95000e0f2843c7f2386c97b80ff98df9d244e5fbf318341c6fdc2b178846f3
lib/bio/db/kegg/expression.rb	444	2.98 KB	8f4213871035a65826092c39a47a5f0302e57fe9a9e296f056faf76c3027023d
lib/bio/db/kegg/reaction.rb	444	1.17 KB	c6554182d498469e395ebe83f60a8d09a7a3a6b920c9275d87c6d5c2eda22f21
lib/bio/db/kegg/taxonomy.rb	444	9.56 KB	2d0cc009d8c542c9207a70144e8250f7e3e755757eb6bfd8dd37d9cf69b79007
lib/bio/db/kegg/genome.rb	444	5.6 KB	ebf108be3ed821c760f8f7f3c2565112f5287f7c7024b4f6ede45a2bb241a86f
lib/bio/db/kegg/orthology.rb	444	2.69 KB	6d03852b1801639d7edc06dcc6c991cd3de62d82d5ddf4acfb9a54c4f550a833
lib/bio/db/kegg/enzyme.rb	444	2.07 KB	cf629721036dca4e1e669ed2975ec62b111e6f534bb0eee74bbcace660c5b94e
lib/bio/db/kegg/keggtab.rb	444	8.86 KB	8746e7d99d099528bb6c32cd2b15f075d7b51a6c6f1afc515e72a29886d7555e
lib/bio/db/lasergene.rb	444	8.87 KB	6be38b378abd5dd0a73211a9a18125dd6b91588acf85d9b62dc9fe4f0ce5a0eb
lib/bio/db/prosite.rb	444	12.5 KB	61eced5116b7110becf2f3434e606faee605d60052031dbc397b0b95e312fbb4
lib/bio/db/litdb.rb	444	1.82 KB	0029e9cf3e579f47af3a1cfa97e5abe7137f35b1d8aa8404c02533c3dd00b458
lib/bio/db/rebase.rb	444	13.8 KB	5b77f101bcb6383037a0e8a2262e34a4b4ab984f6c6ad47e90ccc38d20ed0630
lib/bio/db/aaindex.rb	444	7.57 KB	ad6802a8be202fdb2479cd585af31a2e67c8cf30cad7f9c51d69a1128effa736
lib/bio/db/go.rb	444	11.2 KB	a8a487004c4dc254481e2af7fdbc342b6c88bcb23202d9f18821e84c2e8c3718
lib/bio/db/medline.rb	444	7.22 KB	14b96345af8825fc8a537f3649b369812b25a9bd22f123552242753ffa9e068e
lib/bio/db/fasta.rb	444	25.9 KB	bd949fdc0ff6e87d686f7b3d80fd8474dcaf724fef6475e3e3012d238a672517
lib/bio/db/soft.rb	444	14 KB	bd83e18d8636327a5dd4c32498def94c16bb3957209e653dc7322d76b58242d5
lib/bio/db/nbrf.rb	444	5.2 KB	662f0b5ac3817bdaee7822faa93d325fc268dddfebcc821a2c240fc1a68b9f17
lib/bio/db/genbank/ddbj.rb	444	423 Bytes	1e206a3f3f93eab293fd6533debae45d4c7575dfe1edda71f81f76846abcd036
lib/bio/db/genbank/genbank.rb	444	4.47 KB	3e3569f4597ca5fc39542dedcf65a482f1c98c12e2717cd25feb34e228f9adff
lib/bio/db/genbank/genpept.rb	444	1.22 KB	8317e99c04999c216d5234034ecbfad0c679ca42d5e8793aab551fc8cfba2f7b
lib/bio/db/genbank/common.rb	444	6.67 KB	8a4007d89be26370d23b5e6126bdf1b05030de97c18057678757edc375d62e0c
lib/bio/db/genbank/refseq.rb	444	380 Bytes	71a2c7417d6a1aa575717a4bbd08cabba230008cdfcd326e5581f44bda7cb358
lib/bio/db/gff.rb	444	4.99 KB	24780db0e46b12698c65d6a37b59a17349603594b28750348bc533b04e64de27
lib/bio/db/pdb.rb	444	594 Bytes	75fb017faf8c188ceb846336c581b5455cffe63c4cc6ff6d3e26e264a1d3325c
lib/bio/db/transfac.rb	444	5.89 KB	9517ff987b3420e897fdc690f233ceb3cd9734257ecb33a2b4ebd9fb2d3a1008
lib/bio/db/nexus.rb	444	54.9 KB	4a47cf0f5fa085fc5e51402a65c18690de99304efd0364a68795936fab7fda4e
lib/bio/db/fantom.rb	444	15.1 KB	16ed579f0444447fa1468b19ac4f0a3f4c2dfab2b70b769f8d0919a374777515
lib/bio/db/newick.rb	444	19.2 KB	400f14a7c344d5820f689418d23cbf86acc4b9faeebc461b9a704625933edf73
lib/bio/io/ddbjxml.rb	444	14.1 KB	833505c296409629d5e2cd57aab438cce9a326687df13cf8540a84cf47580c8e
lib/bio/io/ncbirest.rb	444	6.99 KB	350113d444877688db4445e8de8dc40be186d3db806701ef49186ef632764e42
lib/bio/io/dbget.rb	444	5.19 KB	e9f4133b481f5e2e4ed1f528522f145b9249d6fafc5b40a7c8e43e813cb5cc8c
lib/bio/io/soapwsdl.rb	444	2.3 KB	a986284bdf999c960ba417a7ce244c8d8cfcd22faa60b1ca333c03fb0dca2550
lib/bio/io/ncbisoap.rb	444	3.87 KB	e95b248f5cb52e2cb4517d03961c439e4211dd77dbc6bf921dfd512e70d12978
lib/bio/io/ensembl.rb	444	5.74 KB	1b164463566711c738fad223b26f672d0552cea2ef0352cb375f4ac4e02ad45e
lib/bio/io/das.rb	444	12.6 KB	2ab559ee4752b5d3ab1ef7f4f31e99ee5d8173343f4ee56819496b9ccddc11e8
lib/bio/io/higet.rb	444	1.3 KB	8d6daf64f8d2f1395102a877163cb75af7f1a35f2415ca702047e83c3bdc14aa
lib/bio/io/ebisoap.rb	444	2.95 KB	fb8eacdbc9778a088eab23bcd721946bc46c8780ade929f1927765cb4a59393e
lib/bio/io/registry.rb	444	7.43 KB	1b7ac3b57b1d74b8d27210bb2b8387580fe0e4901cacde18e90c22b2df1232f1
lib/bio/io/fastacmd.rb	444	4.1 KB	fbbc315bd926712bf1e78e5acbb31beac08f4550fe05277a6bece94db822e2c8
lib/bio/io/keggapi.rb	444	22.8 KB	f8c9e279c28f08981a18f70a9c4e8d1506ba7379fcab0e472de0c04f85778b44
lib/bio/io/sql.rb	444	9.22 KB	bc430210cead59cfa54bd137261956b438d6d61df9db0e250c3f9a70beed0c24
lib/bio/io/flatfile/indexer.rb	444	26.1 KB	79308c0f5c40e9651ba8f951e3130c76bd92a2d16937823869b22c2be5029bb7
lib/bio/io/flatfile/bdb.rb	444	5.55 KB	a0151a2360d3e2a0604e37b78830c26c9da2f84a29d89015476e35a525a7d26e
lib/bio/io/flatfile/index.rb	444	33 KB	f93543076a8267a5d9d8842d06507b0697d082d0e723fd3d4cc9c1353ebf015b
lib/bio/io/hinv.rb	444	11.5 KB	df1b4b440217ed561217bd11cb17bdea3ca7292eebe36764906b919f80bbb787
lib/bio/io/pubmed.rb	444	8.38 KB	2314e79c074249d65de0d62063a6887ebebd42616a84ad66da70c2d719d4e3f9
lib/bio/io/flatfile.rb	444	37.4 KB	9cc04cfc4ab8e55e3fa8dceeb5cb5923874f4b5c78e271f45274232bc06d78e4
lib/bio/io/fetch.rb	444	6.21 KB	a4af7615b8aa570fb4f2550d614eab72ff87b89debda24658c7818d93ea380f9
lib/bio/appl/gcg/msf.rb	444	5.15 KB	fd778a350e36e6e4df600f44dbae2a78628aa0eb6d3c2de95cfb895b403ac601
lib/bio/appl/gcg/seq.rb	444	5.41 KB	4aae0d8bde943bf48bd28128c9a9206ba0d75a437420f3023c58d0035edc7f40
lib/bio/appl/pts1.rb	444	6.34 KB	307da86e6d8c4148ffa5c1d9de758f956482c6086403fbdbd4ce314584ed6eef
lib/bio/appl/blat/report.rb	444	16.3 KB	5b84cfb9fb5109a610d61b4ba33c6e38b4927a817f3ede1ccd17e0daa4e1e8c4
lib/bio/appl/sim4/report.rb	444	15.8 KB	d0fc27d14093b9099016eb35b1b94e1b54f900ad56c7dc20f141d64f43c910e8
lib/bio/appl/blast/rexml.rb	444	3.91 KB	15e78a142621a0801ea69bbb1b94b22ddd322d4eaa5d184f1b9761fb198a9086
lib/bio/appl/blast/report.rb	444	15.1 KB	4011ca021a453c2719ba875220af178651825b3ded69796c11f713dd56e463c0
lib/bio/appl/blast/format0.rb	444	50.6 KB	b9635b373e698765df8cfcbdc42b7837115d5db6da794dc2d22f571afcb2ca78
lib/bio/appl/blast/format8.rb	444	1.98 KB	3211e163d76f74b155f0184305e65b64168f5a6b3a436bff5ca71a3b147c0bea
lib/bio/appl/blast/wublast.rb	444	17.9 KB	28fc57b78438b4e1de17d8fbba69aa646cd933fa9e5c6cb94a06b5a4ea4ae201
lib/bio/appl/blast/xmlparser.rb	444	6.55 KB	9a1feae2fd51c84ba743936f1a81b2660f6a5a51b12d33b5b3b4bbd1af135b2a
lib/bio/appl/blast/rpsblast.rb	444	5.86 KB	000a3f9d3460e18b5a9628c7ab7cfd6aec2d8293d106a6e7a918698e6f96f287
lib/bio/appl/fasta/format10.rb	444	6.72 KB	cf13d021b28a8d57939e954a296e9a5ce7a3606164d0d44d576e585f239fd95c
lib/bio/appl/hmmer/report.rb	444	16.8 KB	10ae02c34ff77721136a04e9573a9a0038adec0b5f56d8d9258e2414125dc851
lib/bio/appl/mafft/report.rb	444	6.51 KB	1d4b4cfee1e66e52d7c39cb7f3086148d38b815d44f843f33a30d4042e42db33
lib/bio/appl/psort/report.rb	444	13.3 KB	f5027a089a6308d50213fcdee67a4facec53f284203ef537d03009d6bcfc7cd2
lib/bio/appl/clustalw/report.rb	444	4.46 KB	5200a055639043299fde52fa1c7dfcea0aea0f035270a157709f2f8799850b96
lib/bio/appl/sosui/report.rb	444	3.11 KB	7f2205aba52f328558c5e117db6ff53782e0e24c2168d722f87357a8acd6c604
lib/bio/appl/tmhmm/report.rb	444	4.89 KB	6b97716cbbd520ce466162e5bc7ca330bd3186737e06afc5dec4c02a02d16442
lib/bio/appl/hmmer.rb	444	2.31 KB	6f95b3474797d429f56bfbfc60290413423ad5629b4401f1b3db77025b8b9149
lib/bio/appl/muscle.rb	444	1.37 KB	3913777ac7be3249cd810bc9718b5cad5c33f1baf8b81f86176551db71436bc5
lib/bio/appl/blast.rb	444	10.2 KB	909da8c5554fc4e94b91b196b4edd77d3b3b616d54749a0dc29f86258cccb585
lib/bio/appl/sim4.rb	444	3.3 KB	0738d0d14c2f1ec99a5125831ae2ee3c3de5f09ce6489ee50e9eb82e7d5f2662
lib/bio/appl/mafft.rb	444	7.14 KB	03c8da2d5aef2ff37488e33f03a31697a9e91590840ce2221cd3cf83bc5e65dc
lib/bio/appl/fasta.rb	444	6.3 KB	b87f74a13e7de0b9e6da1e8fe39d6b79ff4b952f77f084ee9226b471f2c66678
lib/bio/appl/targetp/report.rb	444	6.39 KB	27171c5d835d13ea788acd79cedd8357af7c0fcd94429e0b2bb713365b3a36dc
lib/bio/appl/probcons.rb	444	1.16 KB	f8899e8ac6e99ecf62a793507c2e51c4be2fb3a69f0c44e02bec869a9e3fb867
lib/bio/appl/clustalw.rb	444	5.98 KB	1e51eff966b274cec63a5d10e2ac61cb598b9125163c63ac4b9a443b23c1d1d5
lib/bio/appl/bl2seq/report.rb	444	11.3 KB	3ca1ec254b043913e319665db79a256ab5c49241ea27cfd49a3bccabd0854888
lib/bio/appl/tcoffee.rb	444	1.46 KB	5d6065494772947211a2b8d1b5d50e84aae79c591238ba640f86fdce51a2b706
lib/bio/appl/genscan/report.rb	444	13.9 KB	01f3bb2e71caaba107b24b886fa6cc3d92726b2fb01aa54e1f7b2f2e8cb5bd0a
lib/bio/appl/emboss.rb	444	6.08 KB	deb9645f09998c1f6f5dbef7a97a2e5fb491328634ab4d50f09b2f1afa8ec2e1
lib/bio/appl/phylip/alignment.rb	444	3.36 KB	74ab9a941fc46def4555c416d5502eaf884d8fe7da4499b14a57df98c5d15ec2
lib/bio/appl/phylip/distance_matrix.rb	444	2.63 KB	24455644af9afe549c082972df362c5caa3d3eea3db29b2298f975a05d3c6626
lib/bio/appl/spidey/report.rb	444	19 KB	e7ec75fc26c812cc81deaa8653dfba4418ce4910a4ae63cc6dc6e938673b17df
lib/bio/appl/iprscan/report.rb	444	11.7 KB	a78cda0bb4a26de10aa6408262f8eacdec6a27dcbc0d51d6a81fc7b3c3154d80
lib/bio/appl/psort.rb	444	14.9 KB	76967a5fa6ae16c3ec881f43072d4561b121fced1ce9e6d062058b9a1031a4e3
lib/bio/data/aa.rb	444	7.42 KB	0b1650ba0471f4af368538eb9aebfd92405b09a35647a0e51a500984ba451a74
lib/bio/data/na.rb	444	4.16 KB	391876b95b4eeab095f90a61a3fe5397edac84ab1b41f3dc9aed23b35319d0a2
lib/bio/data/codontable.rb	444	25.6 KB	c4134b19bbc9acd8ba2a824cbb81e56c28f8688db58078721837d3771b143e5c
lib/bio/util/contingency_table.rb	444	11.6 KB	9c5b597106ea06c49113f888a7c1a0bf6730a5e916f41751aff98d5e560ae7fd
lib/bio/util/color_scheme/strand.rb	444	1.25 KB	875060462cd79b26800c6a6122c21083fc55747ed85325162db2ac21038a18b1
lib/bio/util/color_scheme/taylor.rb	444	1.07 KB	1af407d819e588fd266b4076e08849c3f7fe6211cd9799b8db2126286ee5e17e
lib/bio/util/color_scheme/zappo.rb	444	1.07 KB	4fbe84b2835206f44f0cf7ad95889c7c28f4a207ed015f86436dd5e47f534ce5
lib/bio/util/color_scheme/turn.rb	444	1.24 KB	bd3eccff3a257ba853884956d26e8da73b68412375bf9531af7964a991ced74e
lib/bio/util/color_scheme/nucleotide.rb	444	690 Bytes	826ecc72308f879c325103e36a5dbe51fe67ec5b9fcf32e73c133ceeaf80376e
lib/bio/util/color_scheme/buried.rb	444	1.24 KB	9904524d8f999ef83de1568d72809c1999cece53397c655ef8776a78a38eafa9
lib/bio/util/color_scheme/hydropathy.rb	444	1.34 KB	8b827c40b823eb57874ecf65156a8ad9ef2ed1278be7050e3e8e7ba5f93061e3
lib/bio/util/color_scheme/helix.rb	444	1.25 KB	565b1a9f94431205873436ba4a2ab2a3e3267c9bf3e0cce246ef661c49109ef7
lib/bio/util/restriction_enzyme/double_stranded.rb	444	10.6 KB	5d70feb8d68c4580c82efc1582d9084ce5ce5c35d6832753b579f4807e7518ca
lib/bio/util/restriction_enzyme/range/sequence_range/fragments.rb	444	949 Bytes	d9f9349d45f95f3e753b7b8650da42e032ac0bc3db6a8c5db0d4ec9b4c7a8573
lib/bio/util/restriction_enzyme/range/sequence_range/fragment.rb	444	1.27 KB	9787b52acc8e9dc5ed6a283e85c719ef895b95fbc03d74726d2a6b4d414965a4
lib/bio/util/restriction_enzyme/range/sequence_range/calculated_cuts.rb	444	7.92 KB	ac87847488e0bc2464886afdcd360ef39e8f7efda273a03e0e425c3c24cbcdae
lib/bio/util/restriction_enzyme/range/cut_ranges.rb	444	1.21 KB	6367e63e557c219111df6e6d2006e7545db7d40082e7874a6bae643f870fc174
lib/bio/util/restriction_enzyme/range/horizontal_cut_range.rb	444	1.79 KB	09e37d064b972eb2495cc4e490b0b7abe045b18317c4fa93d7b5676c19faa328
lib/bio/util/restriction_enzyme/range/cut_range.rb	444	593 Bytes	cd3c8ec45c3405bc00eb6359e8cfae4d83b8153759b1e1496fe3b0c50a2bf97d
lib/bio/util/restriction_enzyme/range/sequence_range.rb	444	9.22 KB	c476ba4e8d13695c7aa1745ff91f39d2d938f246b900fec033a9e5b099456d8a
lib/bio/util/restriction_enzyme/range/vertical_cut_range.rb	444	2.5 KB	7a189f653796e06b5666065f52815594373ee505b600a8414aad9db17755ef97
lib/bio/util/restriction_enzyme/single_strand/cut_locations_in_enzyme_notation.rb	444	3.97 KB	6179c8fdd0d215eecd48e63a89121de5da1e228bdf7158d5d5c94f1222a91ab6
lib/bio/util/restriction_enzyme/cut_symbol.rb	444	2.65 KB	486d4e9af1af0417779b3514701d7a748692b007a9645303f86e2ba02e919186
lib/bio/util/restriction_enzyme/single_strand_complement.rb	444	730 Bytes	47d32c263f36934713f03c1d70d8f2fa0006a326c70bf7ff645eb65071d99cf1
lib/bio/util/restriction_enzyme/double_stranded/cut_locations.rb	444	1.76 KB	75460543e7cbc0f4892791acef7855df597d6904fceccdd999074725ba0fdf78
lib/bio/util/restriction_enzyme/double_stranded/cut_location_pair.rb	444	2.9 KB	1fcd5f98ac571a6af6a1a13c4d74dc9eddd524454edd2d5b1c7f98ab858c4ae8
lib/bio/util/restriction_enzyme/double_stranded/aligned_strands.rb	444	4.08 KB	6800d44c6e6a18e877d1b26b627eb305aee5dbba25cbf6c6909a09c4a2c91b99
lib/bio/util/restriction_enzyme/double_stranded/cut_locations_in_enzyme_notation.rb	444	3.17 KB	b52e94099dfdd4d82dc5cd5e05d0d25d6e70f2d1beab41ee6b38169c837b45b3
lib/bio/util/restriction_enzyme/double_stranded/cut_location_pair_in_enzyme_notation.rb	444	1.02 KB	bef996cd083852621ca8ad4835467e0cec36c896641dddff73ef6601cbf6bfb6
lib/bio/util/restriction_enzyme/analysis.rb	444	9.58 KB	ce30016b52ee7520e2cba5d83363c057a72a664c84f9a42a6fb2dd2a9fcb596f
lib/bio/util/restriction_enzyme/analysis_basic.rb	444	8.21 KB	2abfa2c7a42e0ca3c6f0aa857f044aaed1f22b6013159c7bb20c9d04ca7ac04e
lib/bio/util/restriction_enzyme/single_strand.rb	444	6.56 KB	740452cff9b5d5a413bc5bdd9be7656bd3e3a199d53f68ece8adce5e932fbeed
lib/bio/util/restriction_enzyme/enzymes.yaml	444	87.5 KB	56ed1fd2f2d5557604da2044f3d491ccc5b845c43b4b307b395fb89e3798b346
lib/bio/util/restriction_enzyme/string_formatting.rb	444	2.83 KB	222f84fb60277208e57b30341fa3f7ba2867ea461c01aeff4c1b001d6cc4bc8d
lib/bio/util/sirna.rb	444	7.33 KB	26edd6daebc70387f61effdc8aaf917f3c8c5c0ae9174bf24211857bb0b2221a
lib/bio/util/color_scheme.rb	444	5 KB	e143c2d3e5f9115ff4e9a5806c1ea8cd4f50745e21529effa1d36f729b33baa3
lib/bio/util/restriction_enzyme.rb	444	7.96 KB	afd9d77484d5d21043ad573c87004e42678fc6d8e999fa452a509342602d156c
lib/bio/db.rb	444	8.14 KB	63ef9fcaf06e37eb4e88d3040881f7689d6f99b9e75cf8f2824f8b82ff9e38d4
lib/bio/shell/core.rb	444	12.7 KB	8d7d7a019ce87757a67ccb12556e98dc277135bc23f227aaf95434634ee92bbf
lib/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/bioruby_generator.rb	444	1.44 KB	bf6c4843686cf1319cf6c94b146216c65279c5b479f06b66784178fbf180071c
lib/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/bioruby-gem.png	444	6.79 KB	483e2f19ce8966c8490191c261d40e3bafcff790c1abdf21060307e31ef2372d
lib/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/_modules.rhtml	444	110 Bytes	d673ed625540297e132f32b8c8f5298f7c6876386d8dc307ba9c44bcb8075bb5
lib/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/bioruby-bg.gif	444	1.4 KB	cb34983afbbf48685f0848c55692ed18b7fcfb20d92a7d65447bd9f75673ebbf
lib/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/spinner.gif	444	1.51 KB	e008bc0bca2fa6f9b9c113fad73551230961baec88c06b20997ec50171bb2b6b
lib/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/commands.rhtml	444	142 Bytes	f636303863e9caae6ad5b285d102c3b2f8451353c15d3163f7333e5c10512141
lib/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/bioruby_helper.rb	444	1.13 KB	becf3bf68fa08f81e54b9bbe60f241b1dc0e6a5d316480f6f477f4f7bdbf9dff
lib/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/bioruby_controller.rb	444	3.52 KB	5cefaba3f464ae203e4ddd96bf705384f9790f5658a557ffc4faed55ebd7bc92
lib/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/_methods.rhtml	444	215 Bytes	f729f88b0e7b5f80f1460f30cd59cb6d4c48c9f0b19ef147c7d706019f4a6939
lib/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/bioruby-link.gif	444	2.69 KB	0a62ede00f058222991d080db3b08ee22298ea956f4b666aa14c82fd747ab695
lib/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/_variables.rhtml	444	188 Bytes	160318fc0d3ea31644ec64a11ff9edf0e60f66fe20c1f15c2d703c0252596555
lib/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/_log.rhtml	444	818 Bytes	b494b8150835b9f21b8e61ef20b6a063a8f485af7e4176d9941369224a9670f2
lib/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/_classes.rhtml	444	103 Bytes	69cbd28d0be4a6e87e3360dc027f45ca0d98e1bd651cca345351928f13e11191
lib/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/history.rhtml	444	219 Bytes	5dce1def10e5e98cbe02b490c0d1facb3fa0295b38fbbb4d272b1587592bfdae
lib/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/bioruby.css	444	4.8 KB	bff86b2ccc5c0fa51a0f18ea1c078f0cdb1e1d46c82814a60905d319f06bd103
lib/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/bioruby.rhtml	444	1.2 KB	9bc0d74504629bf7a5a94a83855c1f650463073f01ec0ca592bf6b771beea1b8
lib/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/index.rhtml	444	918 Bytes	b6b12f77b3c97eabab267cbb5f1bb3f38d6441ac09bb3f91a15383722971c7ac
lib/bio/shell/interface.rb	444	4.34 KB	be478421babc80cccf2b9d506c6c0c4fcd28054cfb07c8833b0d716d9b3c6377
lib/bio/shell/irb.rb	444	2.28 KB	5ea436be30792395277b73e63b4a313a8019bf6dc3c488cdb1c0f36f43f66ab5
lib/bio/shell/plugin/blast.rb	444	789 Bytes	363a9cd26d862b6fc7d7dd6cba92eb1e5f8a1e85252768e14f22ba6691b141d8
lib/bio/shell/plugin/codon.rb	444	5.95 KB	ca5ea167f8b0dffd44bbe810c3ca77b22e8eda146da319a12267d5d4b06e192c
lib/bio/shell/plugin/soap.rb	444	2.08 KB	5d80fec34e0b50136894d5c96f14d44700ebd2b64ca9830cf37fe1ae99d6bd8d
lib/bio/shell/plugin/midi.rb	444	9.85 KB	b3e1173d5009c7df0ae5bd06560292b4397b26c7a3b06c7f3639ffc1bd4ea007
lib/bio/shell/plugin/das.rb	444	1.01 KB	65258848a7b0c1e90740cdfd8235c478c92ac1a434b19255c38abd2544abed05
lib/bio/shell/plugin/emboss.rb	444	378 Bytes	3c672cb04ab61b3a2fb7f451a8a4e7e87be843b2353095e0c7fe3d6257c68bed
lib/bio/shell/plugin/obda.rb	444	870 Bytes	b5999d927691ff7a320fb474e3d2376e0d302feefb657efa9bc3e2d544967407
lib/bio/shell/plugin/keggapi.rb	444	4.76 KB	d57e48fcc23204e607171447424ecd3075768acd171cc87ed1b99510cf934b6c
lib/bio/shell/plugin/entry.rb	444	2.68 KB	2df7619a4e89724c6606c03b8c44dd7b8161c8ce72ee4992303f3753e5d6ba3a
lib/bio/shell/plugin/seq.rb	444	6.53 KB	5c21f7ae85dbda5c18c954a9ac27980659b02d7cd27020f78ba3814e2a50d232
lib/bio/shell/plugin/flatfile.rb	444	2.29 KB	8c296ec5abb50e2071a047b4a4cb34f32dd436dd17dffd6915e34ab0e88fd3c7
lib/bio/shell/plugin/psort.rb	444	1.17 KB	ab085742b7659066c313a6fcfc4c1b063233c173a18f97167add22669cfc0cfe
lib/bio/shell/object.rb	444	1.11 KB	9a46bd1a61c6ac95c55401ac345aa31a7fc5ca2243cb2c8a7414c0d1b2ad3b78
lib/bio/shell/web.rb	444	2.18 KB	2075a224e814a0e8dd336dbaf323a7e3a3b8a0e49fbca169e8221a0c229ae123
lib/bio/shell/setup.rb	444	2.5 KB	8fe1225a57c89d14f61594b0cd2f6411bb3a33f90ce805780e19be7e3e349a25
lib/bio/shell/script.rb	444	476 Bytes	5be184d23bb6de666291ff4bfefdd1293d1dbc5cacd63b00ac8c3124e3322c90
lib/bio/sequence.rb	444	14.9 KB	6c1efc14561d0c05076a9d060e7773be057ad22f448614e3ce17f9a46adcf4f4
lib/bio/tree.rb	444	24.2 KB	b5e6d3dc5a3e665be1eb9f1ab523a8f75a37526c38798f83dd2d43612827fb8b
lib/bio/map.rb	444	12.8 KB	97165720a85cc9a617919ee4d87f5b05030a2805856c041314a8982325c4c71f
lib/bio/reference.rb	444	18 KB	07ac5eaaf5c026db769e0d898faedac1d38ff8cddd5770249c476f2f05e69d93
lib/bio/location.rb	444	25 KB	1d94ba954fc0544f42062a62acd7a9390bf91645e63c5614effe9bd010f55426
lib/bio/sequence/aa.rb	444	3.07 KB	a9367cf1041fdea91b141dba7f998096146b8f12921ae2d7c188d42736804f3b
lib/bio/sequence/na.rb	444	14 KB	6dd67df64f7c5d893060d9e8aeceaeba1b8388daf9ab3edb1d1671172f9fde55
lib/bio/sequence/common.rb	444	9.85 KB	de817f654a26c2f4b936a08df3d26a0db74abc422e0dda8e8bf8cc855d22a2e0
lib/bio/sequence/compat.rb	444	3.46 KB	b53c975bf6792b12db07730701151faa9ce956a757f9af2a1511ae37ea5d0936
lib/bio/sequence/format.rb	444	4.44 KB	36e720dbbfeb3728df19492740158594ccb5a0bf7f7aa40205d85935f92df139
lib/bio/sequence/generic.rb	444	428 Bytes	40ebce47a9323f96fa8e8428aa20cbcbebdd34b52ebbe9547cacb22c98f33b30
lib/bio/command.rb	444	9.12 KB	9aae35694967f1a40b9e71fbf96a6c1e4edbe1106224643f60ddae85340cc13f
lib/bio/alignment.rb	444	73.5 KB	d85b3b451b67e3e8f3068da46d38bb608b6c4f67cf9c9e6963e88cb828e3cbda
lib/bio/pathway.rb	444	22.6 KB	19ec6b882d71c9f853ec31c3b3c26b1cc162b46303b956068c6226149f944435
lib/bio/feature.rb	444	6.18 KB	e2dbd4ce35e2ea9a96f7271f8a358dfdf975b57fa49bb5940a87594f125122d4
lib/bio/shell.rb	444	1005 Bytes	d9d224823e3706f916b5f8f75da908fb380190d5a8d5b2f23ea2d6cdae000c45
lib/bio.rb	444	7.74 KB	3ef4b6723fb25dafa9ca11d4c15e77d16c12bb529196d96c052bae9c8f9aad90
sample/ssearch2tab.rb	623	2.24 KB	f48f03ed7e929175411bdb75df185c16b906a9fd5fc0f3e7c8feb1a95536a25a
sample/genes2nuc.rb	623	955 Bytes	0caf11a1a36cc66aa4dfcf92ff53af12ce4990b663a2096d907243b736b67267
sample/genes2pep.rb	623	955 Bytes	c8e66040931bfaf471485d02057b6f1efb407805045541cd7152ada2bc11860a
sample/dbget	623	1.17 KB	04ccde1383182e2490158b2c6b5fde219e2c9b15c46b4572a79e6d1844d6a7ea
sample/genes2tab.rb	623	1.73 KB	4d160b473fd20374635ca2a04130913b0c02ed3b94169785727f88c13d14b5aa
sample/tfastx2tab.rb	623	2.39 KB	166ff75261d96454f297b3986dd16a154baeb5be15684be68871ba147e73ee87
sample/gb2tab.rb	623	5.65 KB	bc7816d5b592ec40701d58978e0c94ffbdf63156a502c685be78ed54abdb0d0e
sample/fasta2tab.rb	623	2.33 KB	ec5e4a2ee4cc4f219cb2274886beecb8485edc60b6d8c04e8c3a4f4324455028
sample/na2aa.rb	623	990 Bytes	5d4636fcfba5ba91d2c7f50e48b3d3c7ca4eb811238ac6578909c933a2572ae3
sample/color_scheme_na.rb	444	2.01 KB	8a184ec205da562d16d8f1b81ed89ca7ee61d44b1c29bcb104d3d3baad4fdf1e
sample/goslim.rb	623	6.62 KB	f88251ccd40a5548b5b1fa9e6515732282f53a3819185afb67b78b4b69991f14
sample/vs-genes.rb	623	5.82 KB	88f460be7dd0ea6961a364efb8ffa2037dd20636234803968dbd99db783cfaa9
sample/enzymes.rb	623	2 KB	6e6056acba8725e95dd245dc889c3f5d388001b0111923bc973edb6600fecb53
sample/gbtab2mysql.rb	623	3.99 KB	92b5b3f0f9ab26f44e193bd51adca9ad1c41dbbeff05cf7395cfc02d40fd8624
sample/gt2fasta.rb	623	1.19 KB	a2276c062324475448793430ead285622080fba27cd386fbdef8008218a5a727
sample/biofetch.rb	623	12.2 KB	0e2e2a35cc2970bf0cefaa6d4befb431082a0391228435cb9f15df3ded3970c9
sample/fastasort.rb	623	1.75 KB	1b62217e8944bd9815b230caadb3665dd82d70885ef67643795c21e616a8a831
sample/tdiary.rb	444	4.63 KB	7e6c6074a6486cdb0d1022f17f4dccc32d3ff0491457e0bd2a9e5e015b788272
sample/any2fasta.rb	623	1.33 KB	2b781b7bdf098238d5fe0772f5cabeae4130d09755ba1c8f9fa05d9cd9338a32
sample/psortplot_html.rb	444	4.95 KB	75a7811ea4d6aa05206b50aaea0643dc7d2d9b3813955d1d84904f227a9ceafb
sample/genome2rb.rb	623	910 Bytes	c163eac8c0477dd2b7f93400518da3f656d11de834693f82c432add97876cb06
sample/fsplit.rb	623	1.11 KB	400c70b8905f27f74fd581c8c9accf5ab24748c9725131890d3e8a560dd4b80b
sample/fastagrep.rb	623	1.78 KB	cb2f5248e1106048f2428cef80577fbab52ec65ee81ae33dbfb5de02ee90ecbb
sample/genome2tab.rb	623	1.65 KB	5325f258867cc7f73710c9773bde73c12dbce2e4edbb3e2e8bc91c887cf06ad3
sample/pmsearch.rb	623	1.18 KB	9c004531088572c4e49f798d2b3b3d2527b217cdbe7d635eeb7af2dc3a46e2de
sample/gb2fasta.rb	623	924 Bytes	c41ea6c950dcc6d8295e292f7213b8460d71f9f7819e6e02a688ef350e270dcf
test/data/embl/AB090716.embl	444	2.47 KB	0cf0a12b44f6472a021abcf4dc38f2f8a64d6dd4049463056057968e2ce0f0f4
test/data/embl/AB090716.embl.rel89	444	2.49 KB	ac5f6d55a30fc5f050f0d8ab1f50fb206707385e7b8434daf02dd7ed623f55a0
test/data/soft/GDS100_partial.soft	623	4.41 KB	1bfefad740153929f2e57e33eb45487558e52da5e577f6a1c690c06f7af5ed0b
test/data/soft/GSE3457_family_partial.soft	623	45.5 KB	dbb03aadc6b6db0a5a80b05b6b09ace4725fbdbd2862c6925d0a7c72b68aaef3
test/data/HMMER/hmmsearch.out	444	3.67 KB	575ce8e79d16903c9cf7670748e88bad399066ef5b9bb35f93cb36298d76b8f9
test/data/HMMER/hmmpfam.out	444	3.13 KB	e832f4b86eebeb3d956ca1ecef073986f108f22553916975a061b49d61c55c02
test/data/SOSUI/sample.report	444	414 Bytes	1925c1a9a14b535fcdbc76c4e57ac1195a9f830c63345423ee426def973aa333
test/data/TMHMM/sample.report	444	909 Bytes	9f86ea10faa13634881100b73613287672f62c509903768c33ac1d4d4cda4b4c
test/data/blast/2.2.15.blastp.m7	444	67.2 KB	723f8d684b11de6b01630896e6e96b37d95dc80344bf550128bf27b59200cb8b
test/data/blast/b0002.faa.m0	444	5.15 KB	2479b6f0b728c354edbf01fe600cd7884308e1e6a22913a7420e23af75cbfd75
test/data/blast/b0002.faa.m7	444	5.52 KB	bb7d1c37f92f8a36527c02efb6f6352294eb1acf688ea6caedb7b934f9817e8f
test/data/blast/b0002.faa.m8	444	56 Bytes	6c329cdca78f16508223e98bcbe25cb26e96d8e24180439e1ca913034fd261e6
test/data/blast/b0002.faa	444	1.02 KB	bfd37a1019479f9388ea3c0151097176337d608993f0d0d1b6e0c69ef7850c3b
test/data/fasta/example1.txt	444	4.66 KB	7b441d36bd74e2bb8662c58aee4fd9003efe79a59eb0449558f4855d839c3bf8
test/data/fasta/example2.txt	444	1.35 KB	228e65bbb2986163fae76f27c57f046d0b3bc3f76cabd0f9f8dc65e6ad31460a
test/data/bl2seq/cd8a_p53_e-5blastp.bl2seq	444	984 Bytes	7f6e883493ac3be2114dfe4794e4a324bb67e7e9064c211bed60a6527c783b33
test/data/bl2seq/cd8a_cd8b_blastp.bl2seq	444	1.54 KB	bacf6a696044c0751edd37d72025326ac19417e39f76139e1ac568d54c098e2f
test/data/genscan/sample.report	444	2.7 KB	f13ec60b9b006881654cb13344f92618f94d669cfa2fde890be41f37f3f38ad8
test/data/aaindex/DAYM780301	444	2.04 KB	20b2940e4d45f6b2710ca0295998804233dd8407f607a8803dd428fdf82a55da
test/data/aaindex/PRAM900102	444	1.08 KB	62991a1bd9b197111da30dd3bd8f2a637c435778aef8d2bbb548c5e0fa8ea69d
test/data/refseq/nm_126355.entret	444	3.4 KB	60a6bdd9418cc8b9bfc96a1017f412db4f6baddfb3bd9a33c17297bbfc89aee7
test/data/uniprot/p53_human.uniprot	444	71 KB	cf6237bed4c283ab5a40c330c6554d49a1ab52f48069cfd90f3082edfde2ea98
test/data/iprscan/merged.raw	444	7.47 KB	5eeed06ce72f5e9a2b6c1b8cd95daf17c8df82b1e926056dfc089a141a1177f1
test/data/iprscan/merged.txt	444	5.17 KB	b8920e4a017e8c9d0bdd837bf6691c8ed13fe3dfad8f5992b97cdb1f4db62b8c
test/data/prosite/prosite.dat	444	167 KB	cffe5a81263ac7e3877bab8f7d32e27ea722411b4d4f0fca235fe4e552fae671
test/unit/bio/db/pdb/test_pdb.rb	444	3.34 KB	9b677d5119c65fb0aced828804b527cae400ec09ed9fcbf497a95645398e3a17
test/unit/bio/db/embl/test_common.rb	444	2.36 KB	5d3b582f2c68f25654d5396df3488717874f933cb2ef0b1d672ed130ae4be24f
test/unit/bio/db/embl/test_uniprot.rb	444	844 Bytes	150f6e59ed38b31198b4ba453e9af887ff22feaf57984eb32f62d82c741169b4
test/unit/bio/db/embl/test_embl.rb	444	4.9 KB	004a8c4bc1ae3ca016ab7e910980ee63e81af358822ecfd224003a8d2624fae2
test/unit/bio/db/embl/test_embl_rel89.rb	444	5.09 KB	023de5ae37c659b2ae482df98114dfd174f3920acf11cc8bb257bd98e1c1c69d
test/unit/bio/db/embl/test_sptr.rb	444	79.1 KB	9524acda6034e6b857a14b37cc0b1cbb28211d9474d0ad89f87025f3d01c5055
test/unit/bio/db/kegg/test_genes.rb	444	1.08 KB	d54b0dcfafea74a46e6fc6076aeb53c8b05f08ff11abbe1e2a68ea5f48d1941c
test/unit/bio/db/test_prosite.rb	444	18 KB	b86ceea50a7e585cc2ba2cb9f442844e8834e0117b048a57a90a6f7ab76201f6
test/unit/bio/db/test_aaindex.rb	444	6.05 KB	8798d4d41b60393aa3e42329b84a1618a84d36df213c50bec2121389ed9b8377
test/unit/bio/db/test_soft.rb	444	6.66 KB	b6bc93ea726026432fc0b909fefa7b488eca736cd703cc8a7ddc9ac9ab720c6f
test/unit/bio/db/test_fasta.rb	444	8.47 KB	6377df17d2105774bc5e817fdd66c84cb7e8a9f8f0499d9b9475e181a3f7534e
test/unit/bio/db/test_gff.rb	444	3.41 KB	df91df52aeef6e32969c605fb90e8402811437cb5773e564f700057b7bbc1ddd
test/unit/bio/db/test_lasergene.rb	444	8.35 KB	6e66af40738d72e98689c6dfbba10437b5e2a905f4df486a9a7ddf8c32db3c6c
test/unit/bio/db/test_nexus.rb	444	15.7 KB	123e6d9169761d716cfab67c410377564e69b1d4e943ac4a7a92bf367c8d4b91
test/unit/bio/db/test_newick.rb	444	9.45 KB	7932930eda6bcc2c486eb923e36d265d6df2b0443cdb94f8fddb4456e424d3ae
test/unit/bio/db/test_rebase.rb	444	2.48 KB	133e2276b79c1b047da8040b1d586ec368fa276255488d9c0fe846a18f5f5cc5
test/unit/bio/io/test_soapwsdl.rb	444	717 Bytes	50344cacc3f0c85c6b9ed46e0cf8594afa2e785dfa6ca083e94cf11e002ba2a1
test/unit/bio/io/test_ddbjxml.rb	444	2.08 KB	e638cb8e0a3a158c428519bd83e94883c3aeb1e76173d88c48fa1c5b0af5ec4f
test/unit/bio/io/test_ensembl.rb	444	2.4 KB	6d21a47a430f655fde25adcb3d7888788825bf5d607069ab9fa0789c4442440a
test/unit/bio/io/test_fastacmd.rb	444	901 Bytes	d13b4c4aa0dd3280ce93a6f2f6640b64a4a2f6a7944f091c252d14e3aa0711c0
test/unit/bio/io/test_flatfile.rb	444	5.91 KB	28724d6ceb6a934d7ba34797b8fceb3f22c128b8a0ea4be8f61bfd48cde60c8b
test/unit/bio/appl/blast/test_report.rb	444	14.1 KB	4070f0ec388012e7957b53784718bc6d2657cfb405b606a51f6214b83874fa09
test/unit/bio/appl/blast/test_xmlparser.rb	444	5.86 KB	5ec33857924a0c40cb5068b4d6798f6a2cbb4d4ccf7feff49dd50a0f98c00b95
test/unit/bio/appl/hmmer/test_report.rb	444	8.59 KB	557a82f278bfb11c2a1e5d6a2e131eaa6324a80f1b1aaca3256825f3b9f15bf1
test/unit/bio/appl/mafft/test_report.rb	444	1.93 KB	7b7493518735048a2f963636b76ce71ad0c5e6d10a301e009780a72f53ccabe2
test/unit/bio/appl/sosui/test_report.rb	444	1.82 KB	12c0ae343b75ea99666feae1c4b40eac8e363043109c510bb35e511c60700f0d
test/unit/bio/appl/tmhmm/test_report.rb	444	3.28 KB	cc4e1f6ac3f9ccc21e764d103f840101790321e8b5d6c8d18cbf16b772fdeb41
test/unit/bio/appl/test_blast.rb	444	3.97 KB	538e9e57f7f332727258760771da855dafba77e9de5c88f36951b53e7cffa713
test/unit/bio/appl/test_fasta.rb	444	3.15 KB	8243b623afde0a8121491f80358447950149a1871cd567d88cb39928ffe3d9ab
test/unit/bio/appl/targetp/test_report.rb	444	3.7 KB	05fbbbe11fb46ed996cb87f20846ee3c12aa08d846915f549e43699702fefc20
test/unit/bio/appl/bl2seq/test_report.rb	444	3.54 KB	93ec87d906e7cfdde677f799ee0889fb87c8a6e95e6c608df9d07a7081beef8d
test/unit/bio/appl/genscan/test_report.rb	444	5.13 KB	e1e0f20f991c114878427ef6d489609b5ba33a8a3af509b526028325bbb970bf
test/unit/bio/appl/test_pts1.rb	444	2.99 KB	7ce721b1de02c1823b89c189d3f1aa3c8201602a539de22709fd5104eb0ba3c0
test/unit/bio/appl/iprscan/test_report.rb	444	9.15 KB	4714adcb93034a63008fe083d6fe46f31fd592f92c374cc62de47e859d88b56d
test/unit/bio/data/test_aa.rb	444	1.83 KB	93cda5232d62085aa4be1aa5727d00fa3acfba99bfe629aaf57369e5fadc6301
test/unit/bio/data/test_na.rb	444	1.81 KB	2a43af919f53aa04750973cb41e7a05588f9cd0c0c1fe80a91936f1f68d80fd3
test/unit/bio/data/test_codontable.rb	444	2.31 KB	aa90f5773269d27422a9e88b3f4c5d9d05560fa06c93154251be15b236dacbe0
test/unit/bio/test_pathway.rb	444	12.8 KB	4ec035d6cab977c83fa8395cad1289f9ea3831146066e6311ec7d63cc721d184
test/unit/bio/util/test_restriction_enzyme.rb	444	1.12 KB	6c4d73ea2c0f858940273a8d36e60586ab69a9c56cf2041780268fb4e1fb060c
test/unit/bio/util/restriction_enzyme/single_strand/test_cut_locations_in_enzyme_notation.rb	444	2.37 KB	ae5fdf91ba7ce372f8024d64c5c542ea80b183166baffb49795b32d02e614a21
test/unit/bio/util/restriction_enzyme/test_double_stranded.rb	444	3.78 KB	d9ad36e84c8db239e043bb422639ec9fa3fd095fcfde8cd1d28bb1b379beb8f2
test/unit/bio/util/restriction_enzyme/test_analysis.rb	444	8.76 KB	6ec95135c8ca0dea2d5f6a3340d20001a42f5adeaa5b465b6a8d434de835459e
test/unit/bio/util/restriction_enzyme/test_single_strand.rb	444	4.8 KB	bece1acf19415b276ea5e80e0f943d61cac72a91f0cea36d3a87dff0e51bf30a
test/unit/bio/util/restriction_enzyme/test_string_formatting.rb	444	1.7 KB	2e6c3faabeac921ddb3891353e0cfa3376ab900f1fba712f37ef71311a2f9f22
test/unit/bio/util/restriction_enzyme/double_stranded/test_aligned_strands.rb	444	3.27 KB	a118b1e621d58ba8a34e5bc7586a8ca8fb9d0563e9419342bfe83af02395c75a
test/unit/bio/util/restriction_enzyme/double_stranded/test_cut_locations.rb	444	1.43 KB	06bf4e6e0293a2daa3240467398e83b7ca291f7a33138fb45211fbdcf80c1682
test/unit/bio/util/restriction_enzyme/double_stranded/test_cut_location_pair.rb	444	2.12 KB	a5a670cf13dcf1d12dae8c7460040279756983b3c5adf20153e2c71568566df0
test/unit/bio/util/restriction_enzyme/double_stranded/test_cut_locations_in_enzyme_notation.rb	444	3.1 KB	cf360e447627411ea7e96614c55830f743c4643dcddb52a9b1d336f43731d38f
test/unit/bio/util/restriction_enzyme/double_stranded/test_cut_location_pair_in_enzyme_notation.rb	444	2.17 KB	87a0f1e28fffce216e991989df567857e618ad4040f50e1034b1846015059ecf
test/unit/bio/util/restriction_enzyme/test_single_strand_complement.rb	444	4.86 KB	9c860d7f0069596b76c65856722937c5e39791e7142208572157a19928a0271d
test/unit/bio/util/restriction_enzyme/test_cut_symbol.rb	444	1.27 KB	49aeba4ce9629317b9cf7bc8bb585dccfb7bdab56df9ede3c9754e34f5a383d0
test/unit/bio/util/restriction_enzyme/analysis/test_calculated_cuts.rb	444	10.2 KB	a67c89896938d89cbf9e23dd8a89794820141d1e638a9341688a4f91d5dc0c93
test/unit/bio/util/restriction_enzyme/analysis/test_sequence_range.rb	444	7.66 KB	7ae2cd5de488ce820abd965e485d5f1bbda8f4b78c9ce7611f52953feb5efc8c
test/unit/bio/util/restriction_enzyme/analysis/test_cut_ranges.rb	444	3.4 KB	d3b2082cfc18f4133f91758b12529f0f488ee76dc1a77916b2d8aea3b44d537a
test/unit/bio/util/test_sirna.rb	444	6.13 KB	9beeefe6a5661a79c9c274a139ab940b274b505f825806530151cb34c996a961
test/unit/bio/util/test_color_scheme.rb	444	953 Bytes	23afdc54f75cc0709343a6bcfd985da975f6b3b71286d87ee8d9b8a54bd95e77
test/unit/bio/util/test_contingency_table.rb	444	2.89 KB	df5677603888f79cdf506615a3700d6eb900399e74897dd7ade91fba0f27519d
test/unit/bio/test_feature.rb	444	2.62 KB	1839b5b316f0729b6b6bfad29d90629e36ecbed7bc9c02da71ec4f68d51fb85e
test/unit/bio/test_db.rb	444	1.75 KB	03d5d16653342dc28a77101dda7c649d69413cbb98d2c7fd2ac86075f56189a0
test/unit/bio/test_sequence.rb	444	9.24 KB	b3391eaf66f98b346c1b1e9d2a7e7391419bed40e752eb967645a058073fa8a8
test/unit/bio/test_reference.rb	444	6.46 KB	9e6fe8ac4687ca496e0a7a49dc130239a508683306ef4d17490149becd6d30ac
test/unit/bio/shell/plugin/test_seq.rb	444	4.37 KB	f5975aa6429354ac4e8fabc45e863b76777d72220c8cd19e99171cf99ed7fcd5
test/unit/bio/test_alignment.rb	444	34 KB	ee1923262554bcf22310add450ed783298851adc3cd67476e72cb1f475a3dde8
test/unit/bio/test_tree.rb	444	18.7 KB	5ae02282b18d842570681bf1367089f02b7c284fb165525cfce929a3da551b7f
test/unit/bio/test_location.rb	444	1.1 KB	647bed1a9677eca79dc0beecc4ab22c02949e3d06dd51766adf586239b9f35b9
test/unit/bio/test_map.rb	444	8.03 KB	d9c6dba20a0f6add021416f0a73acdd8ea7740fe6512679aa6cc77f4ace1b2d3
test/unit/bio/sequence/test_aa.rb	444	2.51 KB	e08b48849c1d8804a8ae84563a3031219673534874d5d9d38e81a7c88aa32cb6
test/unit/bio/sequence/test_na.rb	444	7.98 KB	1105e06f033adb6912d2763707eff6b75f53ac90880d9cfebc59eaf7e1641ccd
test/unit/bio/sequence/test_common.rb	444	4.3 KB	bb43e501566156dd69e154a7c0d36f10d1fde5709dd0e6a481fa272d45eb2176
test/unit/bio/sequence/test_compat.rb	444	1.59 KB	23ff4355970552ce15a160fad882046f4bf43920abc889e59f84643a82985a74
test/unit/bio/test_command.rb	444	8.39 KB	85b0e18a4e972adf1b9cad12c2d3543c1f33c9715b2f7bce59b00561be37b10f
test/unit/bio/test_shell.rb	444	441 Bytes	f3b017c5715648a3cec43c74ca819d9ee5359f16f983d6473c8a4208d590729f
test/functional/bio/io/test_soapwsdl.rb	444	1.02 KB	92296789b65c198ae39579021244b682c81ae862fb8e0b3c65b95eb44940ccb8
test/functional/bio/io/test_ensembl.rb	444	5.33 KB	07582dea811a0585c8daba5e26f1872a93f1b5bd44a1bf170799d6c3caf70049
test/runner.rb	444	375 Bytes	830ec1a5392201ba43a9d3ca2b003e669397fcdac3133d5b5a45ad15e52143b8