mspire-0.2.2

https://rubygems.org

id: 37300

number: 0.2.2

platform: ruby

spec_sha256: c31cef7bbc72a3e25e5d5a9c7e68f04ea2679b3b071167285628dad9d3047ac6

sha256: 36d66d8704f77b2d2d938ab5367f5054913e7de9c152ca178a3b124bf72f43ca

created_at: 2024-05-13 08:14:16 UTC

updated_at: 2024-05-29 23:44:32 UTC

position: 66

version_data_entries_count: 84

uploaded_at: 2009-07-25 18:06:19 UTC

indexed: true

has_extensions:

extensions:

Gem size: 121 KB

Version Data Entries

Total: 84

Unpacked size: 395 KB

Full Name	Mode	Size	SHA
lib/spec_id.rb	644	18.8 KB	f82da7f2b6e4361a0be5394435c90700e606716570b8d58b7a2e025fffd32856
README	644	1.16 KB	748dbd99350bc676ff0ec6cd3c7cf5eea2f92bf4ed910a376143e50f2f7100e2
test/tc_bioworks.rb	644	5.27 KB	3e17f178e34d77e16714e58d0dd55c0fc0d102a2295fb966a14ac1f5f5907d2c
test/tc_srf.rb	644	9.83 KB	f45251b915a34735abb9b5857865ed9edb81070ab8c5b416fa7e6de0d7b98ad5
test/tc_bioworks_to_pepxml.rb	644	3.35 KB	63b95c684e68cf09e9fbdb5629c7baafd7bdc721e34804cc04b93bfbb6feea43
lib/fasta.rb	644	10.6 KB	0fe1a2a96edd693e8dab3f227dd8013c81ef007d5b73ddbbf72d8fc8cd1443c4
lib/align.rb	644	5.34 KB	da8614c39ef8d63666a485d4dd68530eb25ff421263440ce1f8a6b6e0bae19d0
lib/sample_enzyme.rb	644	2.45 KB	ab33dc4d4f96ad70dc6c3cd3ad212c5a28250bace2f212e15ad1e46bc00cabf1
lib/gi.rb	644	3.02 KB	04920501d4286631c26eb24088d417744b6bc2b0890026b925df05c8802a9e77
lib/roc.rb	644	3.51 KB	ceb6225b7e007dd209df55e98a6ff2c1bb3bea1ff56ed03fc744961ff7c9e095
lib/spec_id_xml.rb	644	2.64 KB	9d0f0c950834cf199cca2831611d86a8c4fff1f01f3ac7d2e21c4a9c427ace86
lib/toppred.rb	644	283 Bytes	6bf60efca0e0eb4928ad5c34d330d1de08f8e44bc0f8f251ff9657cb67072196
lib/spec_id/sequest.rb	644	55.5 KB	9e796861a7056fb15f8fcad15d172ba943c8a46641577460fab0cd60ba492d4a
lib/spec_id/bioworks.rb	644	14.1 KB	ecd8ec3e712615ca7c2662b3c954b040744e1b77c9ad2f09744f1693902397cd
lib/spec_id/proph.rb	644	13.2 KB	4ca66b3b3d2f91a24e5a475ba519edfa0a9c69aa2ab105ebb6b4357390215d33
lib/spec_id/srf.rb	644	15.6 KB	fcf994084ab8d55353be82ecb979ef0ae4ac772c2b4e3a48484dc309103c7d3c
lib/spec_id/protein_summary.rb	644	15.1 KB	07367d2fc24858bfe3957bc77b157513db0da1dad3113bef99f72c0192293165
lib/spec_id/filter.rb	644	25.9 KB	e3d55b896a9b8ae0cec346ec7a0f6e26a763cc671ddbf839a6405783b768374d
lib/align/chams.rb	644	1.99 KB	363a05334b2723071c2610623b22b40daeac190e4910261f2c17718f11806c2d
lib/spec/msrun.rb	644	3.86 KB	194a4fe54c2c1ea85f53db6b748598615c31f93c420edfef8d8524f94b47c47d
lib/spec/scan.rb	644	1.47 KB	008bfebf755197bcb73b565fa65eccf7536b46779db6681464c30205277a8fd8
lib/spec/mzxml.rb	644	2.97 KB	f7a477712bcb42adfcff67f1731dbe21c4c4312a64402c08846f210ae04dd1af
lib/spec/mzdata.rb	644	1.19 KB	de93469653dea7fbedc1df2d9890c932f134720bfce9a7c7468bcf16f4316752
lib/spec/mzxml/parser.rb	644	11.7 KB	f61a8fbe1d8945ddaa338e06d887f01c318f5a524206c2f2a606b98f273ab5ea
Rakefile	644	5.67 KB	b67663abfcd35596f112a8f24b681bdb6e8a5ff9ec04d45bf5052a781e0c4af1
LICENSE	644	1.74 KB	49ec5bb405e973c72366fcfb3ab81f4afc5fe4f0c4664420840528d79f545666
changelog.txt	644	1.69 KB	028f6a7afc11902fb0b854e56ced1e9d23399ea39201dd72df1d86f767d62b4a
release_notes.txt	644	2 Bytes	75a11da44c802486bc6f65640aa48a730f0f684c5c07a42ba3cd1735eb3fb070
bin/gi2annot.rb	644	216 Bytes	9d3ec4d3a35ebb9ec4c113ac83becb2c5e11d488954fb2cace467b74e1d65164
bin/protein_summary.rb	644	111 Bytes	86b6bdbd6bd16a029a9625018c356bfb66bb7a9552b9a3571b5201eca68283b1
bin/bioworks2sequestXML_gui.rb	644	1.94 KB	21e17a36deb6a22e42af72420c01bc58a23f3eb62967641e77eaba723758c4de
bin/pepproph_filter.rb	644	478 Bytes	88f071310479f70c3e4e5580f10efadb56a70a54b0675110e66047d9a12cd2d3
bin/fasta_shaker.rb	644	3.18 KB	0af113028bbc291fbd7b77c214a0c401bc25b4ef921d571824e2759295c5480b
bin/bioworks_to_pepxml.rb	644	4.22 KB	befc7f2d904a228b2d598e9d433a0969f0366dfc93d305811a4a8d6f6ecce1c4
bin/protxml2prots_peps.rb	644	773 Bytes	7a32b263193a3f5b8926930e25ad98d0830fa466888dd4252559530a47825cf9
bin/id_class_anal.rb	644	2.92 KB	d268574c18d9e1f39152753bd57a0252fae62bd33a344a2bf6ae7a8ecd4b1273
bin/mzxml_to_lmat.rb	644	1.55 KB	b9ed0910cf522fa8c23d44fc060fe5d5b81885954378142913e9aa024f6d3e4d
bin/find_aa_freq.rb	644	381 Bytes	b5c77ce93e2c5dafdc12c0a48a9851e8e0a87ef224c67fad338a87ea57a3378c
bin/filter.rb	644	82 Bytes	e1f4b49ae431fbf653fa1a440189c0742a7738cbefafe1859e53593db885a109
bin/srf_group.rb	644	601 Bytes	781573ec4cf025e78849e88e0607d68ddc8ae481acbd6292ff33736e51eb5942
bin/raw_to_mzXML.rb	644	1.35 KB	f8c5d39d501554c178c61614611ac8eb50d560ff150f4b905929b7b69a3c17bb
script/create_little_pepxml.rb	644	1.17 KB	90a1c48e7e54e39f85697025f4794ee619b93aa65a76d5439fbe089f094537b4
script/mzXML2timeIndex.rb	644	603 Bytes	0443ac1ae0631a6806cab3d82546db674e31be8fd43176775c1629cec5f3a8d7
script/tpp_installer.rb	644	7.75 KB	5d5a31f6277cef6816a7d9253b0e65a27529dd3b4c18734a6d3ca3baee0ea783
script/msvis.rb	644	800 Bytes	5bf259d2df075bc27077ee5cf1143dcffa10c142e11197d7768d328ca8be681f
script/histogram_probs.rb	644	1.58 KB	6f885155b7ec7f5c6977622f433784432d1fcb7031d1c0bbc4bd122d6ba995d0
script/prep_dir.rb	644	2.72 KB	a63bd0114bca0f09bf7ec26842f330679325a0f672a3a7862f9ae1f0580a6344
script/top_hit_per_scan.rb	644	1.79 KB	ac2f9326c5c1d300c869eaa1e6eeb6eb0e085e9f4a6f13218a6dde26ef989ba4
script/genuine_tps_and_probs.rb	644	3.32 KB	87a6cd09ee3ad395929c3024d14a0222ebc5495b2965ad50a83717aed05a1b4b
script/simple_protein_digestion.rb	644	752 Bytes	0c4578001b1e6f1cb0491d7a6e116f8167db8e4e81f7e01b5a8dbeeb2dd0f199
script/estimate_fpr_by_cysteine.rb	644	6 KB	566b5cf081369fbdbba3c306e288dc6d5600f9b74060aa638352fe50ae860a3c
script/find_cysteine_background.rb	644	3.46 KB	ca552b5f627934899cc2692d767665600bc6b88a7a8819ec1e83ec1a92ececb1
script/degenerate_peptides.rb	644	1.2 KB	e96ec7c0057eb846e00f7ce4b476237baf3c85e7fea0c5459e031e35d69ea98b
test/tc_aa_freqs.rb	644	2.11 KB	08e178de516cd1391032e468e2cdc2eeea06665d7af51866763743d43184dc2c
test/tc_proph.rb	644	3.33 KB	d3e8c0ebdce59142b3bd8ca90fb6f8a4759ef5b8894b9077301cafa304ed6c4e
test/tc_gi.rb	644	413 Bytes	bdd51895799932ff7641adb74e681e944ab102d4d3a74bffc76576a97d8e4809
test/tc_sequest.rb	644	14 KB	4c92379420ecf3c1296a2782929ee679811cf3c8c97d8bad802d9ceb905f5272
test/tc_spec.rb	644	3 KB	10da32437ab4ca4c9e555107cf9e21e13b01385925dcac317c11203f4232e1ca
test/tc_protein_summary.rb	644	3.78 KB	dfe472f163e1555c590a5141fda3f065c851b7e0a8aa9c8b6fd289e7a97b4903
test/tc_fasta.rb	644	10.1 KB	1566a1251d0f3506458dd26d355f716bdd714f9a827f7acd74f596841e45cff9
test/tc_msrun.rb	644	2.82 KB	0e43de95014c90a4b080b03a65181b16bca65ad487eff47ce2bacc653b51c3ac
test/tc_peptide_parent_times.rb	644	976 Bytes	cfbe88fc7f4874df8c9c32c8854a4efde7aedb5ac047ecdf294b56668b279aab
test/tc_spec_id.rb	644	5.73 KB	29ba1d4f2aaff274d4c50bd191eeee820e28856f6661d22f15930011239c6430
test/tc_mzxml.rb	644	2.69 KB	60e304fd32d5715cee4f74bc67957ca60f35928ba25047b505eaf31d81cd2107
test/tc_id_precision.rb	644	4.67 KB	9cceaeb794caee6aff8d6ca203ea23526d7c196c423641c659ff441a48ea80d5
test/tc_id_class_anal.rb	644	2 KB	130253e9f3626bcb5a742fa789b7b648450b12247e6382818c56be5a4705e415
test/tc_filter_peps.rb	644	1.26 KB	912bb7732f95aba423ea8bf161d9052ee31d797f55fca403d06ff6cf4e9a2771
test/tc_precision.rb	644	2 KB	21aad207feec53b20caa981db42afc987545d2082f4f896b223b32f0eb1094a9
test/tc_filter.rb	644	7.94 KB	73c3524e2f69dce40a68bad3b418a23a7d5887be49d0b63f76b9803a362b74fc
test/tc_roc.rb	644	4.5 KB	896768ca71cf8ac06e089015cbda9ae12fa7e542aa375f85dfd4f69aa8880f11
test/tc_scan.rb	644	619 Bytes	2724a2a708996b13b37151aa6d1e33a35a6c8c2acbb6185551651dcb08c2cdcf
test/tc_mzxml_to_lmat.rb	644	1.05 KB	0016cb422def530ba9649061f0379727b79b27435cc0a11f14f09585a271665a
test/tc_sample_enzyme.rb	644	980 Bytes	c222651a84805915350f0428404f4fa245b72a8b1e3e912b4334cefe576a5c33
test/tc_spec_id_xml.rb	644	764 Bytes	5e07f60f10a5b361615592c4752df67b452069d8afcaea5da4eb4b5053c3edcf
lib/spec_id/precision.rb	644	11.6 KB	71b2046d68c6eb87102c7654c26679b2733dc83c521b8d440b7e4b074ea6abf9
lib/spec_id/aa_freqs.rb	644	4.77 KB	ea2a748645d2117f308230dfc50641ccc428d5c849689f277db871539d96ebee
lib/spec/mzdata/parser.rb	644	2.38 KB	61cac0ebe5a5de6eca87f511ea31e4d712ec5c091a96de684275b8ad17b7b1b7
INSTALL	644	1.32 KB	02f2ae7fbeedc5daf9c36bea2c0d90b7bb12eccfdf99d6b789f8b76661a5e326
bin/bioworks2excel.rb	644	250 Bytes	0543ab11b5b77a95233e7367f9ae9087adc76f826850ebcea6ebfcdbd25be05a
bin/id_precision.rb	644	4.08 KB	08faf0ae9c9fe0ebde230cf985696209e7ea28519f34ac10d17a04419664e9e5
bin/precision.rb	644	59 Bytes	53e75b711c18e4c210fdb00ca31d9420423b39407b8e19a972f9e56e0b530a97
script/filter-peps.rb	644	3.66 KB	776635c1083b4e9d724c8a5d6f5537adba890cb6d4b97c21c76e8884650448de
test/tc_align.rb	644	2.35 KB	032c1876ae1ffcd94a4f6bfdbf70bc42da94e700ba4d89133f6ad4eb7245c03f
test/tc_fasta_shaker.rb	644	3.45 KB	4dec6ef7605ed209f109abbf3a58faa8cd2d66e67ea2c20946fb8edfd92b6597