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Contents
require 'spec/msrun'
module Align; end
class Align::CHAMS
# Avg_score 0.52559
# Scan1 Scan2 Edge_cost Path_cost Edge_direction
attr_accessor :avg_score, :time_mscans, :time_nscans, :mscans, :nscans, :edge_costs, :path_costs, :directions
def initialize(chams_file, timeIndex_file1, timeIndex_file2)
@time_mscans = []
@time_nscans = []
@mscans = []
@nscans = []
@edge_costs = []
@path_costs = []
@directions = []
read_chams_file(chams_file)
scans_by_num1 = Spec::MSRunIndex.new(timeIndex_file1).scans_by_num
scans_by_num2 = Spec::MSRunIndex.new(timeIndex_file2).scans_by_num
@mscans.each_with_index do |scan,i|
@time_mscans[i] = scans_by_num1[scan].time
end
@nscans.each_with_index do |scan,i|
@time_nscans[i] = scans_by_num2[scan].time
end
end
def read_chams_file(chams_file)
File.open(chams_file).each do |line|
if line =~ /[\d\w]/
if line =~ /^# Avg_score ([\.\d])/
@avg_score = $1.to_f
next
end
end
if line =~ /^#/
next
end
arr = line.chomp.split(/\s+/)
@mscans.push arr[0].to_i
@nscans.push arr[1].to_i
@edge_costs.push arr[2].to_f
@path_costs.push arr[3].to_f
@directions.push arr[4].to_f
end
@mscans.reverse!
@nscans.reverse!
@edge_costs.reverse!
@path_costs.reverse!
@directions.reverse!
end
def write_my_chams_file(filename)
File.open(filename, "w") do |fh|
## As columns:
#(0...@mscans.size).each do |i|
# fh.print @time_mscans[i].to_s + " "
# fh.print @time_nscans[i].to_s + " "
# fh.print @mscans[i].to_s + " "
# fh.print @nscans[i].to_s + " "
# fh.print @edge_costs[i].to_s + "\n"
#end
# As rows:
fh.print @time_mscans.join(" ") + "\n"
fh.print @time_nscans.join(" ") + "\n"
fh.print @mscans.join(" ") + "\n"
fh.print @nscans.join(" ") + "\n"
fh.print @edge_costs.join(" ") + "\n"
end
end
end
Version data entries
7 entries across 7 versions & 1 rubygems