Contents

require 'test/unit'


class TestMzXML2LMat < Test::Unit::TestCase
  ROOT_DIR = File.join(File.dirname(__FILE__), '..')

  def initialize(arg)
    super(arg)
    @tfiles = File.dirname(File.expand_path(__FILE__)) + '/tfiles/'
    @mzxml = @tfiles + "opd1/twenty_scans.mzXML"
    @mzxml_big = @tfiles + "yeast_gly_mzXML/000.mzXML"
    @cmd = "ruby -I #{File.join(ROOT_DIR, 'lib')} -S #{File.join(ROOT_DIR, 'bin', 'mzxml_to_lmat.rb')} "
    @ans_lmata = @tfiles + "opd1/twenty_scans_answ.lmata"
    @ans_lmat = @tfiles + "opd1/twenty_scans_answ.lmat"
  end

  def test_basic_ascii
    cmd = "#{@cmd} #{@mzxml} --ascii"   
    puts `#{cmd}`
    newfile = @mzxml.sub(".mzXML", ".lmata")
    assert(File.exist?(newfile), "#{newfile} exists")
    assert(IO.read(@ans_lmata), IO.read(newfile))
    File.unlink(newfile)
  end

  def test_basic_binary
    cmd = "#{@cmd} #{@mzxml}"   
    puts `#{cmd}`
    newfile = @mzxml.sub(".mzXML", ".lmat")
    assert(File.exist?(newfile), "#{newfile} exists")
    assert(IO.read(@ans_lmat), IO.read(newfile))
    File.unlink(newfile)
  end
end

Version data entries

6 entries across 6 versions & 1 rubygems

Version	Path
mspire-0.1.5	test/tc_mzxml_to_lmat.rb
mspire-0.1.7	test/tc_mzxml_to_lmat.rb
mspire-0.2.0	test/tc_mzxml_to_lmat.rb
mspire-0.2.1	test/tc_mzxml_to_lmat.rb
mspire-0.2.2	test/tc_mzxml_to_lmat.rb
mspire-0.2.4	test/tc_mzxml_to_lmat.rb