# -*- encoding: utf-8 -*-
# stub: mspire 0.2.2 ruby lib

Gem::Specification.new do |s|
  s.name = "mspire".freeze
  s.version = "0.2.2".freeze

  s.required_rubygems_version = Gem::Requirement.new(">= 0".freeze) if s.respond_to? :required_rubygems_version=
  s.require_paths = ["lib".freeze]
  s.authors = ["John Prince".freeze]
  s.date = "2007-05-08"
  s.description = "mspire is for working with mass spectrometry proteomics data".freeze
  s.email = "jprince@icmb.utexas.edu".freeze
  s.executables = ["gi2annot.rb".freeze, "protein_summary.rb".freeze, "bioworks2sequestXML_gui.rb".freeze, "bioworks2excel.rb".freeze, "pepproph_filter.rb".freeze, "fasta_shaker.rb".freeze, "bioworks_to_pepxml.rb".freeze, "protxml2prots_peps.rb".freeze, "id_precision.rb".freeze, "id_class_anal.rb".freeze, "mzxml_to_lmat.rb".freeze, "find_aa_freq.rb".freeze, "filter.rb".freeze, "srf_group.rb".freeze, "precision.rb".freeze, "raw_to_mzXML.rb".freeze]
  s.extra_rdoc_files = ["README".freeze, "INSTALL".freeze, "LICENSE".freeze]
  s.files = ["INSTALL".freeze, "LICENSE".freeze, "README".freeze, "Rakefile".freeze, "bin/bioworks2excel.rb".freeze, "bin/bioworks2sequestXML_gui.rb".freeze, "bin/bioworks_to_pepxml.rb".freeze, "bin/fasta_shaker.rb".freeze, "bin/filter.rb".freeze, "bin/find_aa_freq.rb".freeze, "bin/gi2annot.rb".freeze, "bin/id_class_anal.rb".freeze, "bin/id_precision.rb".freeze, "bin/mzxml_to_lmat.rb".freeze, "bin/pepproph_filter.rb".freeze, "bin/precision.rb".freeze, "bin/protein_summary.rb".freeze, "bin/protxml2prots_peps.rb".freeze, "bin/raw_to_mzXML.rb".freeze, "bin/srf_group.rb".freeze, "changelog.txt".freeze, "lib/align".freeze, "lib/align.rb".freeze, "lib/align/chams.rb".freeze, "lib/fasta.rb".freeze, "lib/gi.rb".freeze, "lib/roc.rb".freeze, "lib/sample_enzyme.rb".freeze, "lib/spec".freeze, "lib/spec/msrun.rb".freeze, "lib/spec/mzdata".freeze, "lib/spec/mzdata.rb".freeze, "lib/spec/mzdata/parser.rb".freeze, "lib/spec/mzxml".freeze, "lib/spec/mzxml.rb".freeze, "lib/spec/mzxml/parser.rb".freeze, "lib/spec/scan.rb".freeze, "lib/spec_id".freeze, "lib/spec_id.rb".freeze, "lib/spec_id/aa_freqs.rb".freeze, "lib/spec_id/bioworks.rb".freeze, "lib/spec_id/filter.rb".freeze, "lib/spec_id/precision.rb".freeze, "lib/spec_id/proph.rb".freeze, "lib/spec_id/protein_summary.rb".freeze, "lib/spec_id/sequest.rb".freeze, "lib/spec_id/srf.rb".freeze, "lib/spec_id_xml.rb".freeze, "lib/toppred.rb".freeze, "release_notes.txt".freeze, "script/create_little_pepxml.rb".freeze, "script/degenerate_peptides.rb".freeze, "script/estimate_fpr_by_cysteine.rb".freeze, "script/filter-peps.rb".freeze, "script/find_cysteine_background.rb".freeze, "script/genuine_tps_and_probs.rb".freeze, "script/histogram_probs.rb".freeze, "script/msvis.rb".freeze, "script/mzXML2timeIndex.rb".freeze, "script/prep_dir.rb".freeze, "script/simple_protein_digestion.rb".freeze, "script/top_hit_per_scan.rb".freeze, "script/tpp_installer.rb".freeze, "test/tc_aa_freqs.rb".freeze, "test/tc_align.rb".freeze, "test/tc_bioworks.rb".freeze, "test/tc_bioworks_to_pepxml.rb".freeze, "test/tc_fasta.rb".freeze, "test/tc_fasta_shaker.rb".freeze, "test/tc_filter.rb".freeze, "test/tc_filter_peps.rb".freeze, "test/tc_gi.rb".freeze, "test/tc_id_class_anal.rb".freeze, "test/tc_id_precision.rb".freeze, "test/tc_msrun.rb".freeze, "test/tc_mzxml.rb".freeze, "test/tc_mzxml_to_lmat.rb".freeze, "test/tc_peptide_parent_times.rb".freeze, "test/tc_precision.rb".freeze, "test/tc_proph.rb".freeze, "test/tc_protein_summary.rb".freeze, "test/tc_roc.rb".freeze, "test/tc_sample_enzyme.rb".freeze, "test/tc_scan.rb".freeze, "test/tc_sequest.rb".freeze, "test/tc_spec.rb".freeze, "test/tc_spec_id.rb".freeze, "test/tc_spec_id_xml.rb".freeze, "test/tc_srf.rb".freeze]
  s.homepage = "http://mspire.rubyforge.org".freeze
  s.rdoc_options = ["--main".freeze, "README".freeze, "--title".freeze, "mspire".freeze]
  s.required_ruby_version = Gem::Requirement.new("> 0.0.0".freeze)
  s.requirements = ["\"xmlparser\" is the prefered xml parser right now.  REXML and regular expressions are used as fallback in some routines.".freeze, "some plotting functions will not be available without the \"gnuplot\" gem (and underlying gnuplot binary)".freeze, "the \"t2x\" binary (in archive) or readw.exe is required to convert .RAW files to mzXML in some applications".freeze, "\"rake\" is useful for development".freeze, "\"webgen (with gems redcloth and bluecloth) is necessary to build web pages".freeze]
  s.rubygems_version = "3.5.10".freeze
  s.summary = "Mass Spectrometry Proteomics Objects, Scripts, and Executables".freeze
  s.test_files = ["test/tc_aa_freqs.rb".freeze, "test/tc_proph.rb".freeze, "test/tc_gi.rb".freeze, "test/tc_align.rb".freeze, "test/tc_sequest.rb".freeze, "test/tc_spec.rb".freeze, "test/tc_bioworks.rb".freeze, "test/tc_protein_summary.rb".freeze, "test/tc_fasta.rb".freeze, "test/tc_msrun.rb".freeze, "test/tc_peptide_parent_times.rb".freeze, "test/tc_spec_id.rb".freeze, "test/tc_mzxml.rb".freeze, "test/tc_srf.rb".freeze, "test/tc_id_precision.rb".freeze, "test/tc_id_class_anal.rb".freeze, "test/tc_filter_peps.rb".freeze, "test/tc_precision.rb".freeze, "test/tc_filter.rb".freeze, "test/tc_roc.rb".freeze, "test/tc_scan.rb".freeze, "test/tc_bioworks_to_pepxml.rb".freeze, "test/tc_mzxml_to_lmat.rb".freeze, "test/tc_fasta_shaker.rb".freeze, "test/tc_sample_enzyme.rb".freeze, "test/tc_spec_id_xml.rb".freeze]

  s.specification_version = 1

  s.add_runtime_dependency(%q<libjtp>.freeze, ["~> 0.1.4".freeze])
end