Contents

mspire 
======

mspire - 'Mass Spectrometry Proteomics in Ruby' is a collection of tools for
working with MS proteomics data in ruby.  It seeks to provide support for open
standards (e.g., parsers for mzData, mzXML, Peptide/Protein Prophet and the
TPP) and contribute other useful functionality for working with mass
spectrometry data in ruby.

Current Focus
-------------

The project is currently focusing on the following:

* SEQUEST data (particularly the output of Bioworks 3.2)
* mzXML
* mzData
* ProteinProphet
* Preparation of files for [obiwarp](http://obi-warp.sourceforge.net/)

Tutorials
---------

* [Database Searching Tutorial](tutorial/database_searching/index.html) -
Demonstrates two methods for running and analysing Bioworks output to obtain
false positive rates using mspire executables.

Warning
-------

This is an experimental package.  As such, all versions prior to version 1.0
will only loosely follow the rubygems versioning scheme: interfaces are
subject to change without a major change in version number prior to version
1.0.  Beyond version 1.0, the versioning scheme will be strictly adhered to.

Installation
------------

see [Install](install.html)

Version data entries

6 entries across 6 versions & 1 rubygems

Version	Path
mspire-0.2.2	README
mspire-0.1.5	README
mspire-0.1.7	README
mspire-0.2.0	README
mspire-0.2.1	README
mspire-0.2.4	README