mspire-0.7.7

https://rubygems.org

id: 37339

number: 0.7.7

platform: ruby

spec_sha256: 4ef3269906cca9c9ac267d722482e7117d19b4bb94cac45dfbec953503c9ba2e

sha256: 998cba5a57b3247c08298b598676fc61b89da1f0b3c696fb432321613b593e72

created_at: 2024-05-13 08:14:16 UTC

updated_at: 2024-05-29 23:45:07 UTC

position: 35

version_data_entries_count: 167

uploaded_at: 2012-03-27 23:46:28 UTC

indexed: true

has_extensions:

extensions:

Gem size: 433 KB

Version Data Entries

Total: 167

Unpacked size: 1.39 MB

Full Name	Mode	Size	SHA
LICENSE	644	2.52 KB	71065bf6d40f3e71898398ec2a65cb107fee35c083166dac99532d117def8dd8
lib/cv/referenceable_param_group_ref.rb	644	204 Bytes	22c3e784d87e5a0170ef2ad344efc40826f56cc70f62fbd9f273cb9b2e9387ef
lib/mspire/cv/param.rb	644	995 Bytes	1c779fa7ee023b0b298080d90d1b916b9ec62191655f3f8c1f9fe09f2c197986
README.rdoc	644	553 Bytes	7449e1eff4b2342f0c8643e6974737f19461de4fb1e55f27f42d7466cb52823c
Rakefile	664	2.02 KB	1928a4f89163e7cafda47e8dfea81aad74290d0b01b538c28490796d3c61bfeb
VERSION	664	5 Bytes	f7506507e062f995f2f8ca74f25856bb8c5c7b47626110de9562e058a0d9be3c
bin/mzml_to_imzml	664	155 Bytes	b64bb128fe2da4891ba38e0ace2b4081fb96f96102011ee9171a2edced5764e0
lib/core_ext/array/in_groups.rb	644	769 Bytes	26cec67e2cf45aa8a13c4fa68f157119fe46f2e1a2ea1f9750378488fd078251
lib/cv.rb	644	35 Bytes	57dd77ec11f5a0855bc02aa6edd9dc1707de313d9838f9f3abf58789365c1e2b
lib/cv/param.rb	644	1.41 KB	6f4da27aa29c941f3facdfdb50c275580f420d4a7eb37b768b3e7397f908b314
lib/io/bookmark.rb	644	345 Bytes	a1248a3a5dc2c1a45bb41a2acb90a7f9e32321f64834b5f214f4ac59acc08bb8
lib/merge.rb	644	178 Bytes	f390b683b5b2e1a533bc65ffc044a0878059d6e12eddf3995c30de34af8fffde
lib/mspire.rb	644	146 Bytes	b5c87342f73693661fea6ebf757c46d5065196ef4c2543526549e72fe0bd1429
lib/mspire/bin.rb	644	1.92 KB	37dd6d2945c5c2da51fd09c8ed347124d28c62693e1298dcadbc6e39220abfe8
lib/mspire/cv.rb	644	230 Bytes	8c967c5dbd2ca85f242c69cd9d1970e1f0d6819598db11e9f30c3746872488aa
lib/mspire/cv/paramable.rb	644	3.5 KB	2b32c90a4d10c9dbd4ee830edb760f99c52884949d7a7981675e1beddf89f671
lib/mspire/digester.rb	644	8.93 KB	a54508b930cb29992ef57c783b97a20e7832b95ba88ed7fc2cc94f7352d6de9c
lib/mspire/error_rate/decoy.rb	644	1.22 KB	13447d61003da5747bee58c6e2f9d45215d0943e1540b8c636ad21517d71f1b2
lib/mspire/error_rate/qvalue.rb	644	3.14 KB	7689582d4d3a369eaa9a9c8d6e51a89cb6ae922091f8c6fb5f97812920c16c06
lib/mspire/fasta.rb	644	2.53 KB	f7e64a8d0d8582371e6061ef47cda2ce3169b8a64e7c3f36d3969b47167dac47
lib/mspire/ident.rb	644	1.11 KB	f6ef3385fd8c9ecd12047a3767f1d07014d4e2d3e9b893e4785c144adff6ee2f
lib/mspire/ident/peptide.rb	644	2.08 KB	b611bbfa45daf5badf255cd2f3a2d6a306fc251e67f408fa209c73e602c81380
lib/mspire/ident/peptide/db.rb	644	7.95 KB	c8407621b1ab3c758cbb6d490b6a0222447f8b6247f86c6b709c4656b12c0dd1
lib/mspire/ident/peptide_hit.rb	644	522 Bytes	d53a6ab5489b38d3054d5f527248584d99f5aa8e1d0308fca3c4113f85e98ace
lib/mspire/ident/peptide_hit/qvalue.rb	644	1.75 KB	237df1ab8e9d9db92115aa4e5dcda728ae2216083ab568e2dd2ac611c5f34741
lib/mspire/ident/pepxml.rb	644	3.91 KB	356c0809a82796ae585fc508a4852a7d564c6e9d44b50d2b709d6783f2a33179
lib/mspire/ident/pepxml/modifications.rb	644	2.9 KB	21d6915376398d08418e4bbe90a51927e7c2b4ecf0acea997146192a80adf857
lib/mspire/ident/pepxml/msms_pipeline_analysis.rb	644	2.2 KB	c1228083d8356be57a1385a85607aaa3a06f771e021c9c9d8fad3fdc3fb46518
lib/mspire/ident/pepxml/msms_run_summary.rb	644	2.65 KB	4453eca1cb77557474c5dceb6a6f83e87a493467bcdb2f55d2cb3344dd58b135
lib/mspire/ident/pepxml/parameters.rb	644	243 Bytes	6a27a2e524a3a0411f44e2636c51b85e608956cdf733c7a0d6db5941704a1fde
lib/mspire/ident/pepxml/sample_enzyme.rb	644	4.62 KB	5ebf24f126ac326e701ebc6795b62f3c9022af977705fe107e32f1d8f6b353e4
lib/mspire/ident/pepxml/search_database.rb	644	1.28 KB	de9b2f2ac61b03881b596e6b199c3c1d08350da9036ad4c3073050a4b1aad1c1
lib/mspire/ident/pepxml/search_hit.rb	644	4.3 KB	e74a0e75e0a3b404cc8a31c8249320210042d0799e0d5f424e66ee2d35c8fec2
lib/mspire/ident/pepxml/search_hit/modification_info.rb	644	2.48 KB	0bdf7a4e39f180cb2e3337ad71cfbb8e1272608da4921911d86de6c3c02805be
lib/mspire/ident/pepxml/search_result.rb	644	862 Bytes	cae5ee1165d5c8ef91cf2f1bee397767beae50cb4022a6e68f58295ef125077d
lib/mspire/ident/pepxml/search_summary.rb	644	2.79 KB	b87e2cb917073ccd74424cd1fbd0efdbe701294d0d5fbde06e15d29244d34c1f
lib/mspire/ident/pepxml/spectrum_query.rb	644	2.35 KB	0a0322342b3281a7d360f0c27a942c08cfd385abba6db4e7c2c5c8709ae5ed1a
lib/mspire/ident/protein.rb	644	695 Bytes	9c0112a7a8a6d71e00525d3fe2596c41a06939eb633c07a5cd07c1e3bfa077ea
lib/mspire/ident/protein_group.rb	644	3.59 KB	45eddf0c92a115814f42312d4b4ddb351e5c983f1d845f0b7d25fdae42724864
lib/mspire/ident/search.rb	644	3.37 KB	77ffd5653d5cd377c971e595ce94be73485dbe7588c45eb10830176356f9b6f8
lib/mspire/imzml/writer.rb	644	16.2 KB	8c14b269f893fe9b95e973a3c1dd2e5e906c1e5b50517b276a8fd1391289ebe0
lib/mspire/imzml/writer/commandline.rb	644	4.39 KB	e4dc71027788ceaf41d0283c209df60577c2e36b26485e2046cd5abb90c68252
lib/mspire/isotope.rb	664	3.07 KB	8e513b564a113bde3ea35dfcf716ee958a2294f8e5455703838a82fd7ac270ca
lib/mspire/isotope/aa.rb	664	2.14 KB	aacad39f6534b08320182d400b9ec3b72386ee5d39f8dff63ff3ecbc6714eb15
lib/mspire/isotope/distribution.rb	664	4.02 KB	3ea12ba0ded2ce2933fe4f998cf9bea18799a32ab17a2d04421413e70f3b234d
lib/mspire/isotope/nist_isotope_info.yml	664	19.7 KB	7eb6891b514be28a583be2c1f9d105d16733fd99ee363fb2ea358c54ec898069
lib/mspire/mascot.rb	644	63 Bytes	cedeec1ef237db177a411ff3fbfa72c9d7ecf71aabe31a92e4147b24738c0a10
lib/mspire/mass.rb	664	1.6 KB	4ecf75a091e787db805d3cd8fdf709fa08e5b6f0c5c8ae5762ccfca29bfb9ba9
lib/mspire/mass/aa.rb	644	2.24 KB	08dcb2b4176a93c064b34fe33ee1dfdf2863f7272bec89c2b3135aad9ce9fbe5
lib/mspire/molecular_formula.rb	664	1.15 KB	5129d0cefda55e738073e94e30b730cd09a1e6df112c3a98ae5b8c6bcc31108e
lib/mspire/mzml/activation.rb	644	1.42 KB	bdd0eb90058e1f50d368a530b5d43e1530864c08836664504dac9c6a71a9dfc8
lib/mspire/mzml/chromatogram.rb	644	737 Bytes	f80f8cf2c37887fba20390501c63cda73ac9c7281db09f79042d960b13db34ef
lib/mspire/mzml/chromatogram_list.rb	644	597 Bytes	998a1e20a2ebf68eebb6226656d8b48a1e8dab042a743b84ddd993d41abdc22c
lib/mspire/mzml/component.rb	644	358 Bytes	9e7e58131213a7aa601b9c2252d1b8577605539325dbd6d0214b6aacef43415e
lib/mspire/mzml/contact.rb	644	392 Bytes	3538ec03307606ba70592a1bc545d03a2152b8f2c02247c82e5b0d643e8e2f7d
lib/mspire/mzml/cv.rb	644	1.92 KB	7603d05bd6b9bb6dd0e5b7a1c8795385fa49d0de3e88a3cca4a3cd3e9f013738
lib/mspire/mzml/data_array.rb	664	5.57 KB	e9b145ce7189a6187766ce1c4c931f97dc16d4f047ac8ca2e0688d1f0185ad9b
lib/mspire/mzml/data_array_container_like.rb	644	1.71 KB	f634a8f110f782c06b8a0f6292bb792c8789f74a26507da249a1196d3235994e
lib/mspire/mzml/data_processing.rb	644	593 Bytes	9bf884c339924568a5ad2d0386f793b495d3072c819a39dfdcb322e281b603bf
lib/mspire/mzml/file_content.rb	644	604 Bytes	9afa6fbda1ece53a510a967b9adbb899729b9f8384640fbaaa0edd8507138fa9
lib/mspire/mzml/file_description.rb	644	1.36 KB	baff4d0f9a4199e4e1006214ae246261599bd31807e54e11e1740b64e3434810
lib/mspire/mzml/index_list.rb	644	2.89 KB	5e74676036f5020f397ceb323221e56cf07aaf2fa5540e07b69bcc009cf05e06
lib/mspire/mzml/isolation_window.rb	644	846 Bytes	5e1cd41ac01f0c3f0f9c70ea02e8b48e8738e92733cd6a5ae96137b903e132e1
lib/mspire/mzml/list.rb	644	673 Bytes	97af68a666935660db0843677844cf45c64a8727d9806fbc12a581a4161724a9
lib/mspire/mzml/plms1.rb	644	1.15 KB	17212022894ebf74e17b4132012809874a18ec7b1cbbf5a484a75470f6c9ea1a
lib/mspire/mzml/precursor.rb	644	1.83 KB	6805b5b51c8f3a3f6a13a06dd1c4769fc5b5f4d3000fb4b28763a3e802542996
lib/mspire/mzml/processing_method.rb	644	532 Bytes	469d082901cd16d6f8c8426008dbf884d20071a5d4fcfc543e647bc410c6eeda
lib/mspire/mzml/product.rb	644	406 Bytes	8b69d0302e77623b2c161f9a47583e9c3d5b33d189d0bd8431a1aa983dbb0774
lib/mspire/mzml/referenceable_param_group.rb	644	1 KB	73c05c2a8646324897c9e7240fe82f76cd6cb31446107070d98a01144d31cbf1
lib/mspire/mzml/run.rb	644	1.43 KB	2fd66ff8e016858029de7f9bc615c7d215c19aba6a3f3acabe43290995f1be75
lib/mspire/mzml/sample.rb	644	527 Bytes	5c6aa85ba4aed7a909ad220a4cf206498b256ff2197af3c324663b918bed1db6
lib/mspire/mzml/scan.rb	644	1.68 KB	6eafc90dd0f1beade9c53b4b7b9313e969943391669a23bd51153dcbefb6e034
lib/mspire/mzml/scan_list.rb	644	771 Bytes	cfef943ea514ac4d6e735b03a7c4365b63da4b0a393597e8edb875197e16930a
lib/mspire/mzml/scan_settings.rb	644	493 Bytes	509fd2ac0fa6a928348b0a972905085aa12ce54d654c40931d2c74a631dadd2a
lib/mspire/mzml/scan_window.rb	664	480 Bytes	aaa605e2e527b1d370da785e84475476d81e758d8ca0910cfea6bbc8cccf19ec
lib/mspire/mzml/selected_ion.rb	644	628 Bytes	2e6dc709330e00bf4a176e92e3d1c1136fca86e56746becf07b92350d8cc0a34
lib/mspire/mzml/software.rb	644	582 Bytes	0734c2aa8cf201bae4aba6d6a36943fd0099f8907ff9d45736810c094227b90a
lib/mspire/mzml/source_file.rb	644	1.46 KB	334186ca090e3439fe7f144e99ab40c5b3f5e66811ad8b3b5bee65a9067b37c6
lib/mspire/mzml/spectrum.rb	664	5.98 KB	a2563d0738ff492cf2b6ef0a4278ffd88a2b81b0c8c580dbe0af22e9388938de
lib/mspire/mzml/spectrum_list.rb	644	1.22 KB	c3f1f7daa846190d41efb7d41773a1150c6388f13c62fc5683aa5edb947dc946
lib/mspire/obo.rb	644	795 Bytes	9bfe48538c57c99317ace0d623cd3b02ef0fd8a5810c73518d595289df2ef687
lib/mspire/peak/point.rb	644	371 Bytes	200162aa26e766c18120a5aefc1e10b07f33b4f666680112da803c75f87a7b7f
lib/mspire/plms1.rb	644	4.62 KB	22a26575269633b0c4b2dc5972473ca7f81ec04b9284c6875acef7fb64cfddd5
lib/mspire/quant/qspec.rb	644	3.62 KB	bfa79e9e3bb9e4cfef750e20f8b499005026e098dccc5e44beca679e8f039bc3
lib/mspire/quant/qspec/protein_group_comparison.rb	644	564 Bytes	c91bd8d79b799736ac0cdb9541ff3098eea0aa4e0e62c8127a59daebc5e22327
lib/mspire/spectrum.rb	664	6.33 KB	d88515e605c129ea805499dba4f563c6a27d2564cd992e71d14db2a08a777db5
lib/mspire/spectrum/centroid.rb	644	522 Bytes	fe245cc854270d359a20eabb5c896fabf16ad89a1fc2224bc819f16534647cdd
lib/mspire/spectrum_like.rb	664	3.61 KB	295f47522c09e6535534bee61cf4f14ccf4eccd2d5b1ac7fb28298e22213b649
lib/mspire/user_param.rb	644	753 Bytes	8828531f6a1e62b78d07f20bb01657d2f2751678b54bce69746af8f9f9632757
lib/obo/ims.rb	644	98 Bytes	bb7c7cc0170014201f88ac7a7c1379e5007c2333cd350e747a9529bb7c773f80
lib/obo/ms.rb	644	98 Bytes	63d4e7fb810eba6678f01a38d531960bee24c0e3a4976379df79b5ec4659ae09
lib/obo/unit.rb	644	100 Bytes	74764c9077c98c6ccdc75501005c987122ca66d467dbae61491d43a12d5b392f
lib/openany.rb	644	435 Bytes	53cd807b8aa300ee99ee6dc7b09d59f465049e7c929f0c4e9ad56b3e26024738
lib/write_file_or_string.rb	644	366 Bytes	a3a789f787939427c48d98a4fceb6e44e0c2e6e8c10742324202f7e823b1d6b5
mspire.gemspec	664	9.1 KB	61a70683a5bb3e97b092208e6fad2fbcbb35c94a23b0800d370208708b4b9130
obo/ms.obo	644	415 KB	b4cdce4f78123978e1e2e5f20cda9431ee9de2b1bfc1227dc5a7203761588d4e
obo/unit.obo	644	87.1 KB	7bbc81fa1099935a452ef8e2ff2da1b5b3334ee7dd0f97baa9409cceeccc98f3
script/mzml_read_binary.rb	775	705 Bytes	a2ecfdb638d9737a53a9f737cfd1cf4884240ff20069fa9b6bb080bc4e23891d
spec/cv/param_spec.rb	664	557 Bytes	5fd1bea6bd219c6ee6280ee397aeab9f28bf7577c28e75cf447d04492d9635d6
spec/mspire/bin_spec.rb	644	2.31 KB	bb1703201dd73b6b7c3a978c32de80fb6c890f9326ad9280fe2fed8f417ccd80
spec/mspire/digester_spec.rb	644	8.96 KB	195bdfe6b715b2d27a4525a190cebf2460b881c5ae0b88c11850f11c57bfdc63
spec/mspire/error_rate/qvalue_spec.rb	644	1.42 KB	8407bba714e4d1eb9b131a59f992798c0f47f42ef66b8730c287006cff3eb633
spec/mspire/fasta_spec.rb	644	3.19 KB	f1fe2b244d0992d100d24c323461afa2b80132d4f762f7dead5d6fca98c7d7ec
spec/mspire/ident/peptide/db_spec.rb	644	3.34 KB	34110b699a560e9a5f291d3d8d632b3010b062a26935c5d38cf3da51e63517f5
spec/mspire/ident/pepxml/search_hit/modification_info_spec.rb	644	1.15 KB	d3d48313888f698f9d4dfee3b00956cea3051781bf4dba0367e908a93ec1d0eb
spec/mspire/ident/pepxml_spec.rb	644	19.7 KB	a684e1bcf92afd7d1e288dcb92b0a8892c4eec9d3e39784035eb5492e32a051b
spec/mspire/ident/protein_group_spec.rb	644	2.67 KB	129cb17d321bb1f12439570082820d63e0761b33f0d7cdf82e5618d9a7036dfa
spec/mspire/imzml/writer_spec.rb	644	5.31 KB	328164d385a7a9e469b9ca04a81e71a76abbc47724a978cc3e2a8930e0baeb9a
spec/mspire/isotope/aa_spec.rb	644	547 Bytes	91277a2cdccbeb4176c63920fa569990c17cd865eef26647abcd1cdd2a7f2487
spec/mspire/isotope/distribution_spec.rb	664	2.52 KB	270b2281f253d3537e73ab05fbaec6acacf3ecdae4d69a449597acc46920163a
spec/mspire/isotope_spec.rb	664	1.52 KB	21f68cfbafac45b01d2a22b2eae39a789f5c06bd11fe71ceb5ff1455a42ac4f9
spec/mspire/mass_spec.rb	664	1.17 KB	c6fb9a7691421a8991bb972301079107436c630b17e694b8a2b280afdd8f4791
spec/mspire/molecular_formula_spec.rb	664	768 Bytes	0cb6e1f795aff45efc42c50dfa328a1b7f5f6dc8aeb421595e38f9538c4806b9
spec/mspire/mzml/cv_spec.rb	644	442 Bytes	987a8ebb0525881ab944344acdf9bfecbbb982aa17a497cba3bec9f4f98c4e9f
spec/mspire/mzml/file_content_spec.rb	644	646 Bytes	a53044c2d82ed3a01f2bc9b4827b334fb0a83103aa2c3e0b98a5f64332592fba
spec/mspire/mzml/file_description_spec.rb	644	224 Bytes	3222279b71ba2c0431a7ccf54168f598773365dbb4d2ab04a9d3726a9126b79d
spec/mspire/mzml/index_list_spec.rb	644	3.72 KB	373824de2215fc745eb691546cdade4c5dbac6beeb6aabe3ac275327cab6d567
spec/mspire/mzml/plms1_spec.rb	644	1.88 KB	11c04224ad66d568cffc428843425852d6d7ef1548b49a805862abaec211e8f8
spec/mspire/mzml/referenceable_param_group_spec.rb	644	1.12 KB	5517287d2629c78d2cd41e61bc3278ff10ee20ab8992f114910ed1ccc20a0522
spec/mspire/mzml/source_file_spec.rb	664	682 Bytes	c84dabfcee08d638d1aa5358ba162a4504bb1078db6285d452ab3628aa4a53a3
spec/mspire/mzml/spectrum_spec.rb	664	1.45 KB	4d143fa6f314c23ea366c05c70ebbfef4ef9a7961dc01691cdcea068605f5bca
spec/mspire/mzml_spec.rb	664	5.85 KB	8fa9f7224fdaf34fa17fa4819ab50b7d6bb20e4086e10dad725cb8c2a97731eb
spec/mspire/peak_spec.rb	644	2.9 KB	5e0a56dd634e4049e8c01e6d9cff869efbd85ced5ae4466e64e10f82e509a2b7
spec/mspire/plms1_spec.rb	644	1.11 KB	b4551d449b5cc061b0824c44eac90038d4e2f56a049c53b5d0e79a6ab2380038
spec/mspire/spectrum_spec.rb	644	2.15 KB	43e10365ff67596a03798f4b9bfbfbe5b3d117c32ae4c77f60365c6cbbe8183e
spec/mspire/user_param_spec.rb	644	1.45 KB	f2eeb0c90684c740033cc212ff7f9c1f5417e9ee1947d38ba2dbd6f5abcdfefc
spec/mspire_spec.rb	644	201 Bytes	0ad271676bf5b830103482e6977a0f41e441fa6e00a401eeb8c7afc6f3bddea5
spec/obo_spec.rb	644	809 Bytes	fe19ff53b504c9298f9ab1172eb085b954b9f029c0f4bc8c4c73dce637319a0f
spec/spec_helper.rb	644	683 Bytes	6f0f5cd6767177e19f4075aa9135fa96adb325994e350aee3564544659898472
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