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Versions: 39
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Stored size: 695 Bytes
Contents
require 'andand'
module Mspire ; end
module Mspire::Ident
module ProteinLike
# an id for the protein
attr_accessor :id
# the protein sequence
attr_accessor :sequence
alias_method :seq, :sequence
alias_method :seq=, :sequence=
# a description of the protein
attr_accessor :description
# if the GN=([^\s]+) regexp is found in the description, returns the first
# match, or nil if not found
def gene_id
description.andand[/ GN=(\w+) ?/, 1]
end
end
# a generic protein class that is ProteinLike
class Protein
include ProteinLike
def initialize(id=nil, sequence=nil)
(@id, @sequence) = id, sequence
end
end
end
Version data entries
39 entries across 39 versions & 1 rubygems