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Contents
require 'spec_helper'
require 'mspire/ident/pepxml/search_hit/modification_info'
describe 'Mspire::Ident::Pepxml::SearchHit::ModificationInfo' do
before do
modaaobjs = [[3, 150.3], [6, 345.2]].map do |ar|
Mspire::Ident::Pepxml::SearchHit::ModificationInfo::ModAminoacidMass.new(*ar)
end
hash = {
:mod_nterm_mass => 520.2,
:modified_peptide => "MOD*IFI^E&D",
:mod_aminoacid_masses => modaaobjs,
}
#answ = "<modification_info mod_nterm_mass=\"520.2\" modified_peptide=\"MOD*IFI^E&D\">\n\t<mod_aminoacid_mass position=\"3\" mass=\"150.3\"/>\n\t<mod_aminoacid_mass position=\"6\" mass=\"345.2\"/>\n</modification_info>\n"
@obj = Mspire::Ident::Pepxml::SearchHit::ModificationInfo.new(hash)
end
it 'can produce valid pepxml xml' do
to_match = ['<modification_info',
' mod_nterm_mass="520.2"',
" modified_peptide=\"MOD*IFI^E&D\"",
"<mod_aminoacid_mass",
" position=\"3\"",
" mass=\"150.3\"",
" position=\"6\"",
" mass=\"345.2\"",
"</modification_info>"]
string = @obj.to_xml
to_match.each do |re|
string.should match(Regexp.new(Regexp.escape(re)))
end
end
end
Version data entries
39 entries across 39 versions & 1 rubygems