bio-0.7.0

https://rubygems.org

id: 11279

number: 0.7.0

platform: ruby

spec_sha256: af02e2f9ee5086d38df5e381daa0e338b72c1dd3b06b41c79285f86943b42ac1

sha256: f809ea015507d0588a7990f67aa047eedabd30a25ec5fea82e895c87371a570a

created_at: 2024-05-13 08:13:57 UTC

updated_at: 2024-05-23 19:20:22 UTC

position: 22

version_data_entries_count: 200

uploaded_at: 2009-07-25 18:31:36 UTC

indexed: true

has_extensions:

extensions:

Gem size: 438 KB

Version Data Entries

Total: 200

Unpacked size: 1.77 MB

Full Name	Mode	Size	SHA
lib/bio/io/brdb.rb	644	2.34 KB	47a523a687e500ea58c6e6d7ebc13885dba27661d6ea8cb7522ad9b8570b984a
lib/bio/appl/tmhmm/report.rb	644	5.58 KB	50a38418e91108b202bf08ed178bcada02e6fd8d58a43863471b2fc47254fa8a
lib/bio/db/fantom.rb	644	15.6 KB	53ca9a740b61634c9cdfc7b62b3663cea179026cb66ef0351c70d0e7d19fc09e
lib/bio/db/embl/embl.rb	644	9.43 KB	fb1caac894f835453d5b64328c640e1255d4284b2142b39a375296533ef00c01
lib/bio/db.rb	644	8.46 KB	76ffbbe8481d8d8b1482ac2b187fca480e6b2041edb3553cd1a309ffc96ab68a
lib/bio/io/ddbjxml.rb	644	15.1 KB	11cac82ef5d4c6e57a41b70052470f651940ccc708c8eb5ea8fb430082bfe60d
sample/tfastx2tab.rb	644	2.39 KB	166ff75261d96454f297b3986dd16a154baeb5be15684be68871ba147e73ee87
bin/br_pmfetch.rb	644	10.5 KB	a2ec52859ca3596f5e55fae6b5db8099317d8f317ccf3880f00605268a1ac9e5
lib/bio/appl/clustalw.rb	644	5.34 KB	bca426396ee1d5959c84f7c10912a1f825bd4e9eee448b80e6a87c68655938cc
lib/bio/appl/hmmer/report.rb	644	15.7 KB	b422c7733a3fe62dae1e6175d7d591539782582615c40c275e7fccb31377afd8
lib/bio/db/kegg/cell.rb	644	1.82 KB	a59a8408897ffded73044bd450684748fcec49b277cf6e3c3ac341123bbe3339
lib/bio/io/soapwsdl.rb	644	2.3 KB	e8e6d9fb3c8026b704aa16ab6d976bef994555d674971132a1e4bb3c92dc8231
sample/gbtab2mysql.rb	644	3.99 KB	92b5b3f0f9ab26f44e193bd51adca9ad1c41dbbeff05cf7395cfc02d40fd8624
sample/ssearch2tab.rb	644	2.24 KB	f48f03ed7e929175411bdb75df185c16b906a9fd5fc0f3e7c8feb1a95536a25a
test/unit/bio/util/test_color_scheme.rb	644	1.5 KB	2b6f30d0fcb2f11d7844a72457c3100d533a7dbfff4ef15a96c0e3c2fa9b701f
lib/bio/db/kegg/ko.rb	644	3.72 KB	a48c0540b97a65a05bcf3aaf2b4075e6e199ee072d1fdfb54b34298b94f1c3e9
sample/genome2tab.rb	644	1.65 KB	5325f258867cc7f73710c9773bde73c12dbce2e4edbb3e2e8bc91c887cf06ad3
lib/bio/db/pdb/atom.rb	644	1.71 KB	9193e1d28f652572c6af62446623da644f1a03b63e0f14a4ea900285e36fea84
lib/bio/db/pdb/residue.rb	644	3.26 KB	0ff01cf3ee42fb123f88bc8cfa9682ed8de2eb88f1c96544914fdc5cfc1af5c8
lib/bio/data/aa.rb	644	7.82 KB	56f609770fd8ccb0cfcbe5c73bdd70cbdcd27f2d6bcf0b6ebca68ccb9fd2f5ae
lib/bio/db/genbank/genpept.rb	644	1.89 KB	ba57e2a63272d92c14e7e7e587104e2f96c50fca1b0ac60a472011e8ec7d373b
lib/bio/db/kegg/expression.rb	644	3.69 KB	51db2794527ccf4433e208dc9089c7edc9b6dd51074ee162713f0fc02f90fa5d
lib/bio/io/higet.rb	644	1.93 KB	6bc6d9c76ca62ccf1a32e395a1fdf060eb7ac098edf704cdd97035d6c43a98ac
lib/bio/shell/core.rb	644	11.4 KB	34f80ee24b9d602e726028955b82bb7f78d000d71d4c2e26a2dc66fc76b8fcaf
lib/bio/util/color_scheme/turn.rb	644	1.88 KB	beb0df8e0909ecf749c3d3ae3cd9a06e23dba0514424b30c8a3fcc10948c86e6
sample/dbget	644	1.17 KB	04ccde1383182e2490158b2c6b5fde219e2c9b15c46b4572a79e6d1844d6a7ea
sample/genes2nuc.rb	644	955 Bytes	0caf11a1a36cc66aa4dfcf92ff53af12ce4990b663a2096d907243b736b67267
test/data/refseq/nm_126355.entret	644	3.4 KB	60a6bdd9418cc8b9bfc96a1017f412db4f6baddfb3bd9a33c17297bbfc89aee7
test/unit/bio/test_shell.rb	644	1.1 KB	5fd8852305aaeaf7bc7cfe38b331e6a3c508f6474a5d1e26737cebdd07a44be2
test/unit/bio/appl/test_fasta.rb	644	3.8 KB	214ae7ab673033f6ff9096afb8b7210927d4ec3dd09dd190b5a5c8957a73d59a
test/unit/bio/appl/blast/test_xmlparser.rb	644	6.47 KB	ebf2dac2028297506e1918bf72d236ce95d8328eeb24f9bc7bcd4ce9f742b15c
test/unit/bio/appl/sosui/test_report.rb	644	2.49 KB	9794d5df65a828bdeb93ee570ae8938cd6d74c5bf625bb7d7caa664858d59d0a
bin/bioruby	644	2.44 KB	ca15d870516ba82276d3f3f4caac260674f6865761225627f11fafbd51c52929
doc/KEGG_API.rd	644	42.9 KB	9936b3bb46250af32f66752d41be191a01da91b8a78d5967a2bc0ec2d11b1af2
lib/bio/appl/blast/format0.rb	644	49.1 KB	76f80a290505f8debc419e5a63fb59055ca4c95a7f04448df5a79386457380f3
lib/bio/db/embl/sptr.rb	644	26.5 KB	980b32c294c2d545b24f6617ab1dd88e777d57e9986715acfc878e81e443900c
lib/bio/io/fetch.rb	644	3.14 KB	6131022a9efb79d21a6b8b8d11d5ace0ddcfe04a2bb096693942a35089bcdd23
lib/bio/io/flatfile/bdb.rb	644	6.25 KB	4515cd71c789a1a037da8068472baf4695e8bf4b34ca8c3f88beef92707bb1d3
lib/bio/shell/plugin/flatfile.rb	644	2.99 KB	ce5cbef68db68bfec29919686167d2cdceda7c3f2bdbbe499bfdcd9846eace46
lib/bio/util/sirna.rb	644	8.04 KB	167f002111f99e7280642db4bdf57eadcf657779c7583126652f0dd513f12cd6
lib/bio/util/color_scheme/helix.rb	644	1.88 KB	0a4288bb5d895f9894c25bdebfb95d72de40a8681aa17cf771f59ef793baa09c
sample/goslim.rb	644	7.04 KB	95ec665de672843016cc3094a68e006494346e7f6f0d7c5e333d39b13923cd5f
test/runner.rb	644	280 Bytes	684cc672f684f2bc51058ea887b99067f1d2f0547a6605fb4e8d4687027de261
test/data/blast/eco:b0002.faa.m7	644	5.52 KB	0ea9f20d69a57458c062fcd6498e3cc1d092df277e76851afd3ce019fed5c8c0
test/data/blast/eco:b0002.faa.m8	644	56 Bytes	6c329cdca78f16508223e98bcbe25cb26e96d8e24180439e1ca913034fd261e6
test/data/uniprot/p53_human.uniprot	644	71 KB	cf6237bed4c283ab5a40c330c6554d49a1ab52f48069cfd90f3082edfde2ea98
test/unit/bio/db/test_fasta.rb	644	9.13 KB	ed8d4c5902dd4a5331a74e9d1e7f065170597cd6d738bb88667a4ada6d02a050
test/unit/bio/db/embl/test_common.rb	644	3.03 KB	9ef74a495df4b40114050e83e3914d4cc3a9673679ee888d339c62ce53ca1075
bin/br_biogetseq.rb	644	1.43 KB	4b9a06a4d618c55b626b9e4c55bc9b232c42ab1181ee60bde870d59ad21b8719
doc/Changes-0.7.rd	644	7.36 KB	088c4a6ee0b4ee95d4010decd1a1f0dd9024a7b1b94730847284ee253ed36eb3
lib/bio/appl/fasta/format10.rb	644	9.89 KB	2e3e1c4eb8e8c270092965abb1dce9452252de8851cf5fd8a66ac936b5fa1775
test/unit/bio/data/test_codontable.rb	644	2.98 KB	71f725095105312d64554330ffa2c8ff444a3c749c8f6cd254662bc9bdf67f15
sample/psortplot_html.rb	644	5.38 KB	c1daa5305a233401c60a2b37eb7baa70f8279e591ddabf697897466b0718cbac
test/unit/bio/db/embl/test_sptr.rb	644	8.49 KB	b4c9a215427351f723db02c1475b9edaec0e7a16d9124eba1a8e25e957f24839
lib/bio/appl/blast/wublast.rb	644	18.2 KB	0eca505228c7053b8cee1363801c2874216be00ee6f013f9e203753ae6e812ee
lib/bio/appl/mafft/report.rb	644	3.53 KB	a96974bc4c6972e1348d1d5b25b68cee5f5081e57b4fca6cbbee7c4016745764
lib/bio/db/medline.rb	644	7.97 KB	65bdc5b36ffaa385848ec16b8b67d080a943a1a65eba4778610671e8beeb12b7
lib/bio/db/nbrf.rb	644	5.72 KB	875911ad0c8f9a127688637f26cb9cd44ebda2c8d943b39e7018d4c0f04729ef
lib/bio/db/transfac.rb	644	6.56 KB	824948023aaa5c9de1898ecaf116e2711dd4a39ca4d2ab229bd4f96cfe7d2ac1
lib/bio/io/pubmed.rb	644	5.41 KB	677f35e765fc512c9104d2720a9c1850df387d3d64f40ce900cf67f6f437403b
lib/bio/shell/session.rb	644	4.49 KB	9189c381dac1cd02893e6d24bc3918c12b8c61610f301f24eeb97cb15390090b
test/data/blast/eco:b0002.faa.m0	644	5.15 KB	55d517328c6957804e0a1ad05938e30c6f5c6816307cd07290f46816711500c2
test/data/embl/AB090716.embl	644	2.47 KB	0cf0a12b44f6472a021abcf4dc38f2f8a64d6dd4049463056057968e2ce0f0f4
test/unit/bio/appl/test_blast.rb	644	4.06 KB	8229fc734e7391c50e24e14ca1255572ed44ede096bb9abc6a1417e2feeb0533
lib/bio/shell.rb	644	1.34 KB	9e1973b8394d3ddab4dd0e5560f1dd6afa3e7d5b81cbb2c35c80cd7fb6960fb6
lib/bio/db/pdb/model.rb	644	2.72 KB	03e727609695ed019fd6d47eacee0b8268b89a8216224357a6e679d5295da78f
lib/bio/shell/plugin/codon.rb	644	6.44 KB	730f94bd2c8e80ad0ff82c3bca478fb11e536e7a9fb6b73b393c9ab789329b91
test/unit/bio/db/embl/test_embl.rb	644	5.57 KB	55641d6adbc6d53024dfdfa8dfad30e577b3fc3ed4bac844759a7f371bc91802
test/unit/bio/db/kegg/test_genes.rb	644	1.76 KB	297af0822e33d2ac175a44101024dfc3ba62956da573568ad3ed332cf6d55ed9
doc/Tutorial.rd	644	37.7 KB	3f1e92d91bae41976c3837bab49324d52092d0df7480163da56ac13469d7d3a9
lib/bio/appl/bl2seq/report.rb	644	12 KB	2eaca5024fb29a9fc30b7af3913df901a29460c387874b101d0442c7fda7237d
lib/bio/appl/sim4/report.rb	644	16.5 KB	ffebb8d871741a2638dc8770046948e09c9d383bc7192f6465656b21e754ce2f
lib/bio/db/embl/trembl.rb	644	1.01 KB	0a6c3be4350ab4227c08b76ef45cc514b748496d6680c59ad652914288dd4648
lib/bio/db/embl/uniprot.rb	644	1.01 KB	ab2f3626c84070aca5ab50fa305b911fefbd7656b0594446581348e5d56cd6c2
lib/bio/io/das.rb	644	13.1 KB	899443982fa86c5fafb6e3831689e8dbe55a701a7307d2c5af9ad5847ea07b1b
lib/bio/io/flatfile.rb	644	13.8 KB	fdbb3b75c920eedd6cff0418dcbf0fff0fa2c44cdd839b799802ec78d9ba2bfa
lib/bio/util/color_scheme.rb	644	5.34 KB	a8726adb454ae4efa15c6af6a41fd91e2e5cd7cc940bbacac369d12e4ffa46d8
lib/bio/util/color_scheme/taylor.rb	644	1.71 KB	f6d555cb8eee1b1e1b4ba8907e48fbd771b48d8bfa8c412557caa04447f8363b
test/unit/bio/test_feature.rb	644	3.28 KB	fdca93318b8c7622f92dee5b6b2eaa7f7de6eaa1b0c8f48ec838a0c6c358122a
test/unit/bio/test_pathway.rb	644	13.5 KB	5d74922fb1c3187f5db33c34999e5eeeed522f8e33c5f172406fb55651839dcf
lib/bio/appl/genscan/report.rb	644	14.6 KB	b2384e726d83b8ccfb5cf3869533bb099a5e7794e5fab1fd29e4099115bb5a50
lib/bio/appl/sosui/report.rb	644	3.8 KB	6df13e930c0e34036322a43e674f619a0736a17ea51efac8c0e445814532e097
lib/bio/db/genbank/refseq.rb	644	1.04 KB	e6bc3aa2c06bb14b8d5d8121c6c8b5235355678114521f883e164ad195d6c3f3
lib/bio/command.rb	644	4.76 KB	e9be660d586086f3e087e30f3b49c3c68355c46aeb32023e8c09b1318de62f6f
lib/bio/appl/blast.rb	644	7.17 KB	bf760f4f37be886ed134b568820709e090394a7a661a372e3a98790fb707ea2b
lib/bio/appl/blast/xmlparser.rb	644	6.96 KB	ae046a8177056d384ae5601d66cdf1e1c8ffb1e6fddb8ddf524e2036f18d7420
lib/bio/db/kegg/keggtab.rb	644	11 KB	79f777c9a961111c75da9661fdd7e3bda0f87590d702e7fb36ee0b0c356f2e6a
sample/fsplit.rb	644	1.11 KB	400c70b8905f27f74fd581c8c9accf5ab24748c9725131890d3e8a560dd4b80b
test/unit/bio/appl/tmhmm/test_report.rb	644	3.96 KB	9a54df3b3cc1754879bdf91f436ee4892feb266a62a4d950c1e627a098e86ce3
doc/KEGG_API.rd.ja	644	40.4 KB	fb0e24bae368490315f14d392545c5d9d73cb3b4b93efcf80dea177cf2e8b818
doc/Tutorial.rd.ja	644	65 KB	53b922dd0cb1375155287b16de4bbc8598329708b30a5e3e28df70b5f65425b6
etc/bioinformatics/seqdatabase.ini	644	3.41 KB	0a930f4502c1dc0ca6adf2ec50c2bda9e8b213d618edb2532017e9443ab58d9a
lib/bioruby.rb	644	1 KB	fd1e804f29d63334f98e0ef914fb127e0e6cb9478eeac1c46a6a04154064edfc
lib/bio/db/gff.rb	644	2.21 KB	b80ac6cccc6f0633908ab2552b57170ea4c21075bf608095eb8497205888d2e2
lib/bio/io/sql.rb	644	11.5 KB	73c13e489a7d0852bedcab43dcc682e3d9f56d65068700388992bf24614c4fdd
lib/bio/io/flatfile/index.rb	644	30.6 KB	40291861b6a5f88d9f5115e7e47e80efb664e646fa54391a0fe04c1319ac5ffd
lib/bio/io/flatfile/indexer.rb	644	25.8 KB	fdf135d178437e7a53d05f59e9c01430ebca5e7cf7f2bba7492b6ae19213b891
lib/bio/shell/plugin/midi.rb	644	10.6 KB	6eafe3954239e23bf1bd059e6227be2eb176cf26f105c4a94bc2ddc6702b8308
lib/bio/util/color_scheme/hydropathy.rb	644	1.98 KB	29d187d6e397d4780aec77dd8f4b62203bb678a6128c58ef2db0de5f619258bb
sample/genome2rb.rb	644	910 Bytes	c163eac8c0477dd2b7f93400518da3f656d11de834693f82c432add97876cb06
test/unit/bio/test_alignment.rb	644	34.5 KB	43fe131b5cb06ac6af2d9b08b70c26bb39f4e150fe5bf08ec0fee5457aa765c1
test/unit/bio/test_location.rb	644	1.76 KB	867afeef2dd80ad5a14130ff1c28cb16466524d82bb69a0b47d603a851854b30
test/unit/bio/data/test_aa.rb	644	2.51 KB	f1b844da90fbe17b9566720e2bba48be4af9cfc0d5cbedd7fa32c5f22d2fa02a
lib/bio/db/aaindex.rb	644	5.42 KB	b2712350993e6bbaf14101c8fbe5cd447bc9f8709eabe804a4716d27e905ce6f
lib/bio/db/prosite.rb	644	14 KB	3ad48700c1a44d661defa0b3ca425dc2886fdf0f73c045f535582f40025ab4c9
lib/bio/db/rebase.rb	644	12.3 KB	e2a641ad73c36c87e69cfee7878bd86c356ac8ac09d7c03985a79b56af825eb9
lib/bio/db/genbank/common.rb	644	6.37 KB	4a197fcfc8e83e1daf09b674b5dc272271a4985c8407575ef7622e930bf46dfb
lib/bio/db/pdb/pdb.rb	644	55.1 KB	5ee20b8f747dbd0d7d0259607d09dec5ea3204be71369746e3e59c02192ecceb
lib/bio/shell/plugin/keggapi.rb	644	5.23 KB	811d5bd2b5f9fab3c8be7afd3aaecd911067b79860189793d4a86a91c43784fe
lib/bio/util/color_scheme/buried.rb	644	1.88 KB	d862aab33b80ce6ff1193a3a2a4a063ead964ce2b5196fddaf3dfd95efee955e
lib/bio/util/color_scheme/nucleotide.rb	644	1.31 KB	41d6f01f4335d0b590d2bbf0b28c04f31c076591c332a0d5adf1896c1434b073
sample/gb2tab.rb	644	5.65 KB	bc7816d5b592ec40701d58978e0c94ffbdf63156a502c685be78ed54abdb0d0e
sample/genes2tab.rb	644	1.73 KB	4d160b473fd20374635ca2a04130913b0c02ed3b94169785727f88c13d14b5aa
sample/gt2fasta.rb	644	1.19 KB	a2276c062324475448793430ead285622080fba27cd386fbdef8008218a5a727
sample/pmsearch.rb	644	1.18 KB	9c004531088572c4e49f798d2b3b3d2527b217cdbe7d635eeb7af2dc3a46e2de
test/data/genscan/sample.report	644	2.7 KB	f13ec60b9b006881654cb13344f92618f94d669cfa2fde890be41f37f3f38ad8
test/unit/bio/util/test_contingency_table.rb	644	3.46 KB	2f1dc1068ca62406ab170eb66dd257af44221b074cf0926f0d38cfa227dfc93e
lib/bio/appl/blast/report.rb	644	18.6 KB	2a273007dddf314cf53043e8eff4c7042b60ec4ded2188e63f8e3db0a245074b
lib/bio/appl/targetp/report.rb	644	7.08 KB	89624a3e78eb57a0fa1114f445fc9504c1314511cf2a4b2053773a830cb2e8da
lib/bio/db/pdb.rb	644	1.19 KB	4b6e4240edfd5649848d640631a470090c9dec216a6570265b3f2ad2a317eb43
test/unit/bio/test_sequence.rb	644	11.4 KB	82abe6583222b68c61dd727cd57b4e16740de967fc3bd2aea2c416b5e83e802c
test/unit/bio/db/test_gff.rb	644	4.07 KB	bff0d24bd0bc8e1c5b4563fe0ab3895363ab41a7b0766c62f2bf07ca4c3c2d9c
lib/bio/location.rb	644	21.2 KB	107754920a5d25a9a9da2d53fc0442b8fa2f7550e9e1e9e75deb9aa814d48d7c
lib/bio/pathway.rb	644	25.5 KB	e21c636d0ce02e6e27ad1f4c4f1eb2803baf7ba2501977162acdc15c07679d53
lib/bio/sequence.rb	644	14.7 KB	84911a4bcf71381e280a08b2f2783b6774ddb8724c547ad29d2fd81fc899f41b
lib/bio/io/registry.rb	644	8.11 KB	06473f20eccf494efa7bd8222f24ae12b5828011971ca6b9060e3b3abf6df940
test/unit/bio/test_command.rb	644	1.79 KB	4c0288ba7cc5a439d057068fb0e29bf91b60ba7bf28809cfcecaab2e71a900c4
lib/bio/appl/fasta.rb	644	6.9 KB	b1404335e77a4b46a86029b26ad475270cd39b20362ed8ef1a307d5f6f98a794
lib/bio/appl/hmmer.rb	644	2.62 KB	b0957f26737c1c8f18bacfd2854b11d44d223e9b17307d4984cc9d67e42dc6ae
lib/bio/data/na.rb	644	4.54 KB	0948c481b9c7744fb59df6de4faccc03190313e5e22a1d671f4557d6c31687ad
lib/bio/data/codontable.rb	644	26.3 KB	c8de0aa2e7af91c7ace0c637ddae67db8718a7faada541b110317b817bfa0de2
lib/bio/db/embl/common.rb	644	9.1 KB	da5c165559841e29e2f495919bd28e9019a676f2e233dd00faa68623dbb37a88
lib/bio/db/embl/swissprot.rb	644	1.02 KB	02eb25c308152f53d6b99d30af8ec1246eb4bb3d3a211d901b62217b92bd1c9a
lib/bio/db/genbank/ddbj.rb	644	1.08 KB	08e498256cfc2854557aa47b45c5b0fdcf2e84cbcc97d7b7ba4e8f6550939aa6
lib/bio/db/kegg/brite.rb	644	1.21 KB	175d110adf0939e702f1d4f58ea458093f614474c1d9119a6309e92c84220e24
test/data/TMHMM/sample.report	644	909 Bytes	9f86ea10faa13634881100b73613287672f62c509903768c33ac1d4d4cda4b4c
test/unit/bio/shell/plugin/test_seq.rb	644	4.65 KB	ed567a12bccac219daac6b913e3a3e1339efc4fdd0e9ea441f35a4f5239057df
lib/bio/alignment.rb	644	54.4 KB	509e3e4e0f5938a017ff9112ce8b3cd06c3e1f6282b9e98f0c1f5dc6c5b3706f
sample/color_scheme_na.rb	644	2.44 KB	095db5362dacd3e082e41b79555ac6b31f19182149eff6fde333a3d40e4f368b
bin/br_biofetch.rb	644	1.86 KB	e6106fbfc64cf8823f7ff9b17f8114da17a558925c104b42e022b5ec84e95958
doc/BioRuby.rd.ja	644	9.37 KB	7500f4cd233419025b83ae91b57df3d40c0582dffe6f9a19a686b9ffee793e21
lib/bio/db/kegg/enzyme.rb	644	2.4 KB	817a58ef31f680754eea95419b03c76442ea8df4c8ca9c9ba5a2844582923ead
lib/bio/db/kegg/reaction.rb	644	1.98 KB	fcaea67273de80940ba9c617519d64992b6f1134e8288875e5819e56f8d744e0
lib/bio/io/fastacmd.rb	644	3.04 KB	e17f1825ef5a8de92cf2df467c28c747d706325716777df04f07fc5dd834695f
test/unit/bio/io/test_ddbjxml.rb	644	2.72 KB	1161b1d0dc67979d6444d30e24a1882a606b9c1443372f2f106dc02872a5c9d0
bin/br_bioflat.rb	644	7.35 KB	11dfbc1b5f9cadcb2559a27c324be0c758e83e78ac02cd7e79f88553ca355ce2
lib/bio.rb	644	7.26 KB	6d312576520b4d131b41ae2ad16aa31bc16bd114b15809f22185d058be19a1de
lib/bio/feature.rb	644	4.6 KB	ca7ef31f5a9e5a429fe93dcdcc7f709ffc4626d2a7b533d4c427d98117aacee2
lib/bio/appl/emboss.rb	644	1.48 KB	9bd197dccdd24b28614562f891ad8eb9e36ea01ba0e67c98d63a52800c89f504
lib/bio/appl/mafft.rb	644	6.27 KB	44a236d45777fbe3599c0392ce90d572c6a172de64c1e2668f42b341b9dcd598
doc/Design.rd.ja	644	11.8 KB	3c8e7056bd314c3e279ba2fc7a29c15a33caec472bb17ee1a70784e59459add9
doc/TODO.rd.ja	644	3.04 KB	292503e19f9758ac8a0251698a4e563b49bdec5ebbde1029082aad3275e7697b
lib/bio/reference.rb	644	8.34 KB	d67474403eb8c66b6cb6545fcfe8ffd2dca78ff293909667a87be0852d7087c8
lib/bio/appl/psort.rb	644	15.3 KB	d4cd0ad4ea9ae953e08378c9bbfa4ea97465c49f82f87bbe2dfd8cb1d2008afb
lib/bio/appl/sim4.rb	644	3.83 KB	2354217cf7ab062e2e54863b76aadf4f9b736f41530d445096cdd82128ba4fd5
lib/bio/appl/blast/format8.rb	644	2.56 KB	31a430e5fad5803761f78ee9e8ecc686f9083ee04a1cef4d7e4b5a0036a70673
lib/bio/appl/blast/rexml.rb	644	4.66 KB	277da9cd39d4d461c04a28345300bb60c38e4fdbf8fecd4b6cddd489fb532667
lib/bio/appl/blat/report.rb	644	12.9 KB	a849cef73918b85e49771792260cb3ccfc349b774ba2fb0ab645a6b4b86b1db3
lib/bio/appl/clustalw/report.rb	644	4.64 KB	fa73c9e8ce6d32f4b7b2ebcfc8639746dde62323a2cfd44633ca8f6de0d83a8f
lib/bio/appl/fasta/format6.rb	644	1.09 KB	3538d8418e175dedda04fe204c7ae31faf4391c194d46a83f44faca6a8a182bf
lib/bio/appl/psort/report.rb	644	14 KB	1c440917efff1c77651a10569b89bc678e5aa56715f2986729a0bd26e01acd8a
lib/bio/appl/spidey/report.rb	644	19.6 KB	b3ff81bc7a76ba20d347053fa4264938b1ac8c70f319125328d14ed93435c8c1
lib/bio/db/fasta.rb	644	22.7 KB	eb48c439ad423476b34e84ed4a659f3d49c4ed5ceebae42d97083d7848ccab3a
lib/bio/db/go.rb	644	11.9 KB	419c6ed1d29fa32c3150b5e5b550859a9a37a03ea3d63d4b743b12177df81628
lib/bio/db/litdb.rb	644	2.58 KB	665094d6faa8b3c41502be8caa6b4ab6d9dc369891638d0861fc06b182b29b14
lib/bio/db/genbank/genbank.rb	644	7.61 KB	d52f458bca9361565f265442dc9e20df0bdc58bea8718db99a1fbe8e0479efb5
lib/bio/db/kegg/compound.rb	644	2.66 KB	0a00ea264ed024129367fcf9b677e89478778292b7123984c45e47abb588de0b
lib/bio/db/kegg/genes.rb	644	6.12 KB	64961da76b1db6bee3dc38daaec6488ff4ca3db75524c39ffccbe13aef9a924f
lib/bio/db/kegg/genome.rb	644	8.25 KB	881cb87afdb649e3b1670a872181d74c10accdee01a58bded22e9bac7fb51c8f
lib/bio/db/kegg/glycan.rb	644	4.68 KB	5dd152886bf41348562ac1022b3a99ec1285fcfc90fc46e9107871292cbc8450
lib/bio/db/kegg/kgml.rb	644	6.95 KB	54487a1b7e4591101b962640136c1772624cfaf7c8d90c786217d09809fca95c
lib/bio/db/pdb/chain.rb	644	3.09 KB	a57d75489dd7b8bfebe6048bbe8939a773aa108968937f4f4f1f4b3241099ef0
lib/bio/db/pdb/utils.rb	644	6.31 KB	07429f02f645627f236defeda285bf8fa350a9a97c2b64f4505b9ad9b930e1c1
lib/bio/io/dbget.rb	644	5.9 KB	09566c75c47b759bdbeacee15f8a0906c8b956fdc52af85b3fec7190b7a12bb2
lib/bio/io/keggapi.rb	644	24 KB	9b764cf2c3053249b22717db2e95bc3cc94de41341c89b59d47e106efaa831e1
lib/bio/shell/plugin/entry.rb	644	2.37 KB	a4f81eee922056886438e8429eb2f0a0170f4b90408702300d90529cbea4ef44
lib/bio/shell/plugin/obda.rb	644	1.54 KB	2384f564304c1ed39552d86b79b168811cea067fe941e96ced2702524f257342
lib/bio/shell/plugin/seq.rb	644	6.45 KB	b80a5bcfed5e2766ed9173faa305e0fffc6ca840ca0c2ed79f0eb5c294805351
lib/bio/util/contingency_table.rb	644	10.8 KB	dd90f4e5e223beb534fb9815ba2bfe5bdce5d9910fd379262345a3f6c9b63a2a
lib/bio/util/color_scheme/strand.rb	644	1.88 KB	d5d3e416eb47920327cba595608a475f6d28e6f9fb49517a6a55a45fb711b27a
lib/bio/util/color_scheme/zappo.rb	644	1.7 KB	4a6293a0cce8e745ef9a6a06fcea93dee232d46431d2e486cfef38b1761ea70d
sample/biofetch.rb	644	12.2 KB	0e2e2a35cc2970bf0cefaa6d4befb431082a0391228435cb9f15df3ded3970c9
sample/fasta2tab.rb	644	2.33 KB	ec5e4a2ee4cc4f219cb2274886beecb8485edc60b6d8c04e8c3a4f4324455028
sample/gb2fasta.rb	644	957 Bytes	9fe0f6c5c03d3fa500060f23208fb31d844ee810a36e5e4c6a73a784d736f796
sample/genes2pep.rb	644	955 Bytes	c8e66040931bfaf471485d02057b6f1efb407805045541cd7152ada2bc11860a
sample/pmfetch.rb	644	1.16 KB	3d7b670f0433eaa8f3aafcbdc14c50fda44ce4e8b36ac1c56bb48147b2f16bb8
sample/tdiary.rb	644	4.63 KB	7e6c6074a6486cdb0d1022f17f4dccc32d3ff0491457e0bd2a9e5e015b788272
sample/vs-genes.rb	644	5.82 KB	88f460be7dd0ea6961a364efb8ffa2037dd20636234803968dbd99db783cfaa9
test/data/blast/eco:b0002.faa	644	1.02 KB	bfd37a1019479f9388ea3c0151097176337d608993f0d0d1b6e0c69ef7850c3b
test/data/prosite/prosite.dat	644	167 KB	cffe5a81263ac7e3877bab8f7d32e27ea722411b4d4f0fca235fe4e552fae671
test/data/SOSUI/sample.report	644	414 Bytes	1925c1a9a14b535fcdbc76c4e57ac1195a9f830c63345423ee426def973aa333
test/unit/bio/test_db.rb	644	2.42 KB	60cfce11a8f286afebab4cff61d8cd75a93eb318baa4ad0273d0618aaeedf10c
test/unit/bio/appl/blast/test_report.rb	644	14.6 KB	8b6326335a99b7c3f93ea8675980b175ca28b1ba1643917b5229cdae247bdd6f
test/unit/bio/appl/genscan/test_report.rb	644	5.81 KB	aa7cc4e0c28f4be6792792c4037d96e95a8eb5f6c442273bd6e6aba55122287f
test/unit/bio/appl/targetp/test_report.rb	644	4.38 KB	0ae8848bea1e70324168ffb7decb17130abad291daa278cfc4564c1581d0198f
test/unit/bio/data/test_na.rb	644	2.39 KB	87b19921f74be082356a9612b8c236d5f2a36cbe0d5bcc22387ee6c42370b2b9
test/unit/bio/db/test_prosite.rb	644	18.7 KB	12058734efbcc60543c8f1152e45ae2eae8cf3788c7fc96f0c547dc9f71ce133
test/unit/bio/db/embl/test_uniprot.rb	644	1.5 KB	247127f4b7e19410daa8869b6ad8fd3b228e1df75dc79a6f5b3acdd248a7bd80
test/unit/bio/io/test_soapwsdl.rb	644	1.36 KB	522e666e7d8cf841d7b990e1a77ad1186a655c1a2e36e1f534fa1fb7f5ac1d57
test/unit/bio/util/test_sirna.rb	644	6.48 KB	f6d9074c95c93bddebe207b506483658edafee4b19418159bade8f7ac4eee4e5