Contents

#
# bio/db/kegg/cell.rb - KEGG/CELL database class
#
#   Copyright (C) 2001 KAWASHIMA Shuichi <[e-mail]>
#
#  This library is free software; you can redistribute it and/or
#  modify it under the terms of the GNU Lesser General Public
#  License as published by the Free Software Foundation; either
#  version 2 of the License, or (at your option) any later version.
#
#  This library is distributed in the hope that it will be useful,
#  but WITHOUT ANY WARRANTY; without even the implied warranty of
#  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
#  Lesser General Public License for more details.
#
#  You should have received a copy of the GNU Lesser General Public
#  License along with this library; if not, write to the Free Software
#  Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307  USA
#
#  $Id: cell.rb,v 1.7 2005/09/08 01:22:11 k Exp $
#

require "bio/db"

module Bio

  class KEGG

    class CELL < KEGGDB

      DELIMITER	= RS = "\n///\n"
      TAGSIZE	= 12

      def initialize(entry)
        super(entry, TAGSIZE)
      end

      def entry_id
        field_fetch('ENTRY')
      end

      def definition
        field_fetch('DEFINITION')
      end

      def org
        field_fetch('ORGANISM')
      end
      alias organism org

      def mother
        field_fetch('MOTHER')
      end

      def daughter
        field_fetch('DAUGHTER').gsub(/ /, '').split(/,/)
      end

      def sister
        field_fetch('SISTER')
      end

      def fate
        field_fetch('CELL_FATE').gsub(/ /, '').split(/,/)
      end

      def contact
        field_fetch('CONTACT').gsub(/ /, '').split(/,/)
      end

      def expression
        field_fetch('EXPRESSION')
      end

      def fig
        field_fetch('FIGURE')
      end

      def ref
        field_fetch('REFERENCE')
      end

    end

  end

end

Version data entries

3 entries across 3 versions & 1 rubygems

Version	Path
bio-0.7.0	lib/bio/db/kegg/cell.rb
bio-0.7.1	lib/bio/db/kegg/cell.rb
bio-1.0.0	lib/bio/db/kegg/cell.rb