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Contents
require 'mspire/ident/protein_group'
require 'mspire/ident/protein'
require 'mspire/ident/peptide_hit'
module Mspire
# An Mspire::Ident::ProteinGroup is an array of proteins that responds to
# :peptide_hits. All protein level identifications should be stored in a
# proteingroup object.
#
# An Mspire::Ident::Protein is an object representing a protein (:id,
# :sequence, :description). Note, it is not a protein hit (use a
# ProteinGroup)
#
# An Mspire::Ident::PeptideHit is an object representing a match between an
# amino acid sequence and a spectrum.
#
# Typical usage:
#
# require 'mspire/ident'
#
# hit1 = PeptideHit.new(:id => 1, :aaseq => 'PEPTIDE', :search =>
# Mspire::Ident::Search.new, etc...)
# peptide_hits = [hit1, hit2, ...]
#
# protein_groups = Mspire::Ident::ProteinGroup.peptide_hits_to_protein_groups(peptide_hits)
# protein_groups.first.peptide_hits # => the peptide hits in that group
module Ident
# returns the filetype (if possible)
def self.filetype(file)
if file =~ /\.srf$/i
:srf
end
end
end
end
Version data entries
39 entries across 39 versions & 1 rubygems