mspire-0.7.4

https://rubygems.org

id: 37336

number: 0.7.4

platform: ruby

spec_sha256: a9ea5222131a4348509ead1223c69877de925a23905c1521141afb501b6caec5

sha256: b28baf6e97c0e3c1a018cc38cc2d36f639b79bbca5d1f42273e09454bfba2fd1

created_at: 2024-05-13 08:14:16 UTC

updated_at: 2024-05-29 23:45:04 UTC

position: 38

version_data_entries_count: 155

uploaded_at: 2012-03-21 23:32:03 UTC

indexed: true

has_extensions:

extensions:

Gem size: 422 KB

Version Data Entries

Total: 155

Unpacked size: 1.35 MB

Full Name	Mode	Size	SHA
lib/mspire/mascot.rb	644	63 Bytes	cedeec1ef237db177a411ff3fbfa72c9d7ecf71aabe31a92e4147b24738c0a10
lib/mspire/molecular_formula.rb	664	1.15 KB	5129d0cefda55e738073e94e30b730cd09a1e6df112c3a98ae5b8c6bcc31108e
lib/mspire/mzml/software.rb	644	596 Bytes	d6a1affc77874b7cfa6c7e7a68a7e38f3f117357040e42c5b4a3a2686442aed0
lib/obo/ms.rb	644	98 Bytes	63d4e7fb810eba6678f01a38d531960bee24c0e3a4976379df79b5ec4659ae09
obo/ims.obo	644	19.8 KB	a1b5ab2ac96e1a38419a7dadd60b671bf65abf801ef0425f337277f6ae169dd4
spec/mspire/digester_spec.rb	644	8.96 KB	195bdfe6b715b2d27a4525a190cebf2460b881c5ae0b88c11850f11c57bfdc63
spec/mspire/mass_spec.rb	664	1.17 KB	c6fb9a7691421a8991bb972301079107436c630b17e694b8a2b280afdd8f4791
spec/testfiles/plms1/output.key	644	148 Bytes	292b7a52fbd48cee4cea63090a2fba82036c41dee11a0c475fb5b09cd90739e3
LICENSE	644	2.52 KB	71065bf6d40f3e71898398ec2a65cb107fee35c083166dac99532d117def8dd8
README.rdoc	644	553 Bytes	7449e1eff4b2342f0c8643e6974737f19461de4fb1e55f27f42d7466cb52823c
Rakefile	664	2.02 KB	1928a4f89163e7cafda47e8dfea81aad74290d0b01b538c28490796d3c61bfeb
VERSION	664	5 Bytes	73efbcc48e15660bbe0b3e1bce780c10fe859a955f61a1fa35f75abcc761f5be
lib/bin.rb	644	1.76 KB	2a405ae46da1cbb853c31d87f4f0da1b9c9c8aeb90dcb77bc5ce2a300e5c538b
lib/core_ext/array/in_groups.rb	644	769 Bytes	26cec67e2cf45aa8a13c4fa68f157119fe46f2e1a2ea1f9750378488fd078251
lib/cv.rb	644	35 Bytes	57dd77ec11f5a0855bc02aa6edd9dc1707de313d9838f9f3abf58789365c1e2b
lib/cv/param.rb	644	1.54 KB	3cc93cd6388da0791c51d0995972e0125720f9a6dc4a6a2fd1af1b402f7040e6
lib/cv/referenceable_param_group_ref.rb	644	204 Bytes	22c3e784d87e5a0170ef2ad344efc40826f56cc70f62fbd9f273cb9b2e9387ef
lib/io/bookmark.rb	644	345 Bytes	a1248a3a5dc2c1a45bb41a2acb90a7f9e32321f64834b5f214f4ac59acc08bb8
lib/merge.rb	644	178 Bytes	f390b683b5b2e1a533bc65ffc044a0878059d6e12eddf3995c30de34af8fffde
lib/mspire.rb	644	146 Bytes	b5c87342f73693661fea6ebf757c46d5065196ef4c2543526549e72fe0bd1429
lib/mspire/cv.rb	644	230 Bytes	8c967c5dbd2ca85f242c69cd9d1970e1f0d6819598db11e9f30c3746872488aa
lib/mspire/cv/param.rb	644	958 Bytes	13d5be0716ec4548ef2d41717a554e9e4d12e3c0b4f69c16e13f8a8aa2168593
lib/mspire/cv/paramable.rb	644	981 Bytes	abd9f273937d464781fb866bc80c8b7717594c71e58032cb6c8f0ef3fc2602a9
lib/mspire/error_rate/qvalue.rb	644	3.14 KB	7689582d4d3a369eaa9a9c8d6e51a89cb6ae922091f8c6fb5f97812920c16c06
lib/mspire/fasta.rb	644	2.53 KB	f7e64a8d0d8582371e6061ef47cda2ce3169b8a64e7c3f36d3969b47167dac47
lib/mspire/ident.rb	644	1.11 KB	f6ef3385fd8c9ecd12047a3767f1d07014d4e2d3e9b893e4785c144adff6ee2f
lib/mspire/ident/peptide.rb	644	2.08 KB	b611bbfa45daf5badf255cd2f3a2d6a306fc251e67f408fa209c73e602c81380
lib/mspire/ident/peptide/db.rb	644	7.95 KB	c8407621b1ab3c758cbb6d490b6a0222447f8b6247f86c6b709c4656b12c0dd1
lib/mspire/ident/peptide_hit.rb	644	522 Bytes	d53a6ab5489b38d3054d5f527248584d99f5aa8e1d0308fca3c4113f85e98ace
lib/mspire/ident/peptide_hit/qvalue.rb	644	1.75 KB	237df1ab8e9d9db92115aa4e5dcda728ae2216083ab568e2dd2ac611c5f34741
lib/mspire/ident/pepxml.rb	644	3.91 KB	356c0809a82796ae585fc508a4852a7d564c6e9d44b50d2b709d6783f2a33179
lib/mspire/ident/pepxml/modifications.rb	644	2.9 KB	21d6915376398d08418e4bbe90a51927e7c2b4ecf0acea997146192a80adf857
lib/mspire/ident/pepxml/msms_pipeline_analysis.rb	644	2.2 KB	c1228083d8356be57a1385a85607aaa3a06f771e021c9c9d8fad3fdc3fb46518
lib/mspire/ident/pepxml/msms_run_summary.rb	644	2.65 KB	4453eca1cb77557474c5dceb6a6f83e87a493467bcdb2f55d2cb3344dd58b135
lib/mspire/ident/pepxml/parameters.rb	644	243 Bytes	6a27a2e524a3a0411f44e2636c51b85e608956cdf733c7a0d6db5941704a1fde
lib/mspire/ident/pepxml/search_database.rb	644	1.28 KB	de9b2f2ac61b03881b596e6b199c3c1d08350da9036ad4c3073050a4b1aad1c1
lib/mspire/ident/pepxml/search_hit.rb	644	4.3 KB	e74a0e75e0a3b404cc8a31c8249320210042d0799e0d5f424e66ee2d35c8fec2
lib/mspire/ident/pepxml/search_hit/modification_info.rb	644	2.48 KB	0bdf7a4e39f180cb2e3337ad71cfbb8e1272608da4921911d86de6c3c02805be
lib/mspire/ident/pepxml/search_result.rb	644	862 Bytes	cae5ee1165d5c8ef91cf2f1bee397767beae50cb4022a6e68f58295ef125077d
lib/mspire/ident/pepxml/search_summary.rb	644	2.79 KB	b87e2cb917073ccd74424cd1fbd0efdbe701294d0d5fbde06e15d29244d34c1f
lib/mspire/ident/protein.rb	644	695 Bytes	9c0112a7a8a6d71e00525d3fe2596c41a06939eb633c07a5cd07c1e3bfa077ea
lib/mspire/ident/protein_group.rb	644	3.59 KB	45eddf0c92a115814f42312d4b4ddb351e5c983f1d845f0b7d25fdae42724864
lib/mspire/ident/search.rb	644	3.37 KB	77ffd5653d5cd377c971e595ce94be73485dbe7588c45eb10830176356f9b6f8
lib/mspire/isotope.rb	664	3.07 KB	8e513b564a113bde3ea35dfcf716ee958a2294f8e5455703838a82fd7ac270ca
lib/mspire/isotope/aa.rb	664	2.14 KB	aacad39f6534b08320182d400b9ec3b72386ee5d39f8dff63ff3ecbc6714eb15
lib/mspire/isotope/distribution.rb	664	3.38 KB	0508092a5f21614b701f4323ba084b0ef47f23cf8e8eeb9ddc37a79d4dc50968
lib/mspire/isotope/nist_isotope_info.yml	664	19.7 KB	7eb6891b514be28a583be2c1f9d105d16733fd99ee363fb2ea358c54ec898069
lib/mspire/mass.rb	664	1.6 KB	4ecf75a091e787db805d3cd8fdf709fa08e5b6f0c5c8ae5762ccfca29bfb9ba9
lib/mspire/mass/aa.rb	644	2.24 KB	08dcb2b4176a93c064b34fe33ee1dfdf2863f7272bec89c2b3135aad9ce9fbe5
lib/mspire/mzml.rb	664	11.4 KB	88a3f564652df000ec2b38d89fef7d928e6de053506de4ad2635626544e9711c
lib/mspire/mzml/chromatogram_list.rb	644	597 Bytes	998a1e20a2ebf68eebb6226656d8b48a1e8dab042a743b84ddd993d41abdc22c
lib/mspire/mzml/component.rb	644	358 Bytes	9e7e58131213a7aa601b9c2252d1b8577605539325dbd6d0214b6aacef43415e
lib/mspire/mzml/contact.rb	644	392 Bytes	3538ec03307606ba70592a1bc545d03a2152b8f2c02247c82e5b0d643e8e2f7d
lib/mspire/mzml/cv.rb	644	1.75 KB	da0c7116c48d76abf6dad4c6254c340682cfa15c02329a25011305bb9da4235a
lib/mspire/mzml/data_array.rb	664	5.13 KB	8a2e41c30236d670e420c0ef05654441b6e9a1ca9280a1607ae7dd884e0058bc
lib/mspire/mzml/data_array_container_like.rb	644	1.81 KB	4981bacc20cf668b65145e1bbc6c89de81a0853fad9396671e7eb817605c2d25
lib/mspire/mzml/data_processing.rb	644	593 Bytes	9bf884c339924568a5ad2d0386f793b495d3072c819a39dfdcb322e281b603bf
lib/mspire/mzml/file_content.rb	644	604 Bytes	9afa6fbda1ece53a510a967b9adbb899729b9f8384640fbaaa0edd8507138fa9
lib/mspire/mzml/file_description.rb	644	1.3 KB	64c3a635e7af87929f1c5f7d7dc64678c9c145cdb3aaeda65ea74026539cfc39
lib/mspire/mzml/index_list.rb	644	2.89 KB	5e74676036f5020f397ceb323221e56cf07aaf2fa5540e07b69bcc009cf05e06
lib/mspire/mzml/instrument_configuration.rb	644	957 Bytes	597c8482dec2c0d8a46d012f18fbc300390171bac608be24d91633bca9016f6f
lib/mspire/mzml/isolation_window.rb	644	695 Bytes	3e7a42d9e9e78dc17ff56c0d260215ea8fa195fc04ad31543909db695a7732dc
lib/mspire/mzml/list.rb	644	673 Bytes	97af68a666935660db0843677844cf45c64a8727d9806fbc12a581a4161724a9
lib/mspire/mzml/plms1.rb	644	1.15 KB	17212022894ebf74e17b4132012809874a18ec7b1cbbf5a484a75470f6c9ea1a
lib/mspire/mzml/precursor.rb	644	1.33 KB	50d4d1efca2e24751bd407a12239b39aaa4006e1f1919cf17a4416af666a3488
lib/mspire/mzml/processing_method.rb	644	546 Bytes	90e867f870e17b71ef5c9240154331ede6bb18f69df077d9acf48eb3bb916132
lib/mspire/mzml/product.rb	644	406 Bytes	8b69d0302e77623b2c161f9a47583e9c3d5b33d189d0bd8431a1aa983dbb0774
lib/mspire/mzml/run.rb	644	1.45 KB	7348006a99cd4719bca716f3384a5c073004ccbe29432148974bbe79da1290da
lib/mspire/mzml/sample.rb	644	541 Bytes	2b7b93a998d7bd4b5a4d20db727e6c73c7f0e1c6b6e0d0df6e510656ebb5bc26
lib/mspire/mzml/scan.rb	644	1.35 KB	b9fa8facbc4e5f97542c73f94d8b5f4416eca2204d7c89d3235f3999ab25fcf0
lib/mspire/mzml/scan_list.rb	644	827 Bytes	01d2d5ac8fa5cade3dc0f00cd46e4a22a6d17fccfd0a1aca28506f8142b41bc0
lib/mspire/mzml/scan_settings.rb	644	507 Bytes	b8af481c8862295a2fc7d9830350ef76184905af76488e0252b958923e9cfdab
lib/mspire/mzml/selected_ion.rb	644	470 Bytes	716ad6c7eee1063d71ce225ef2285a5811921801f1d12b1d18b5c97284c2c2d5
lib/mspire/mzml/source_file.rb	644	1.47 KB	33d798a7c15186b2f437f442db2fba5664d17647b9f41c29186cf32f41e16a63
lib/mspire/mzml/spectrum.rb	664	5.79 KB	48c34718136a3cbb6eab6de60cff8800b2afd14b03e2091ee43f5f00e83da809
lib/mspire/mzml/spectrum_list.rb	644	1.22 KB	c3f1f7daa846190d41efb7d41773a1150c6388f13c62fc5683aa5edb947dc946
lib/mspire/obo.rb	644	795 Bytes	9bfe48538c57c99317ace0d623cd3b02ef0fd8a5810c73518d595289df2ef687
lib/mspire/peak/point.rb	644	371 Bytes	200162aa26e766c18120a5aefc1e10b07f33b4f666680112da803c75f87a7b7f
lib/mspire/plms1.rb	644	4.62 KB	22a26575269633b0c4b2dc5972473ca7f81ec04b9284c6875acef7fb64cfddd5
lib/mspire/quant/qspec.rb	644	3.62 KB	bfa79e9e3bb9e4cfef750e20f8b499005026e098dccc5e44beca679e8f039bc3
lib/mspire/quant/qspec/protein_group_comparison.rb	644	564 Bytes	c91bd8d79b799736ac0cdb9541ff3098eea0aa4e0e62c8127a59daebc5e22327
lib/mspire/spectrum.rb	664	6.33 KB	0ee6b559815445e548b4ea005d16cb1da5e3c7deb4ba5aacc4918f7ec038b12e
lib/mspire/spectrum/centroid.rb	644	522 Bytes	fe245cc854270d359a20eabb5c896fabf16ad89a1fc2224bc819f16534647cdd
lib/mspire/spectrum_like.rb	664	3.61 KB	295f47522c09e6535534bee61cf4f14ccf4eccd2d5b1ac7fb28298e22213b649
lib/mspire/user_param.rb	644	881 Bytes	7f45605b8c649692a841a75bc4b96fc88107b7fe3fef1ba3b8c530f3aa3fe043
lib/obo/ims.rb	644	98 Bytes	bb7c7cc0170014201f88ac7a7c1379e5007c2333cd350e747a9529bb7c773f80
lib/obo/ontology.rb	644	899 Bytes	3bc48eff750d7e332e6f895f39e2fa6fd0978f046c4e6c1237bd75272d31f82c
lib/obo/unit.rb	644	100 Bytes	74764c9077c98c6ccdc75501005c987122ca66d467dbae61491d43a12d5b392f
lib/openany.rb	644	435 Bytes	53cd807b8aa300ee99ee6dc7b09d59f465049e7c929f0c4e9ad56b3e26024738
lib/write_file_or_string.rb	644	366 Bytes	a3a789f787939427c48d98a4fceb6e44e0c2e6e8c10742324202f7e823b1d6b5
mspire.gemspec	664	8.54 KB	2e98b766766569e194ab5e9ee8f715b33daea2fb4dc57360558e7e4b54edd94f
obo/ms.obo	644	415 KB	b4cdce4f78123978e1e2e5f20cda9431ee9de2b1bfc1227dc5a7203761588d4e
obo/unit.obo	644	87.1 KB	7bbc81fa1099935a452ef8e2ff2da1b5b3334ee7dd0f97baa9409cceeccc98f3
script/mzml_read_binary.rb	775	705 Bytes	a2ecfdb638d9737a53a9f737cfd1cf4884240ff20069fa9b6bb080bc4e23891d
spec/bin_spec.rb	644	2.26 KB	3df62230c53f44c6b08c94b96dcdae81b10f0ccfaf71b3657866ec61aa57bff2
spec/mspire/error_rate/qvalue_spec.rb	644	1.42 KB	8407bba714e4d1eb9b131a59f992798c0f47f42ef66b8730c287006cff3eb633
spec/mspire/fasta_spec.rb	644	3.19 KB	f1fe2b244d0992d100d24c323461afa2b80132d4f762f7dead5d6fca98c7d7ec
spec/mspire/ident/peptide/db_spec.rb	644	3.34 KB	34110b699a560e9a5f291d3d8d632b3010b062a26935c5d38cf3da51e63517f5
spec/mspire/ident/pepxml/sample_enzyme_spec.rb	644	4.64 KB	142b00b032a85ea2097bd39fc456aa86584a63497314c4816fe80540597c8292
spec/mspire/ident/pepxml/search_hit/modification_info_spec.rb	644	1.15 KB	d3d48313888f698f9d4dfee3b00956cea3051781bf4dba0367e908a93ec1d0eb
spec/mspire/ident/pepxml_spec.rb	644	19.7 KB	a684e1bcf92afd7d1e288dcb92b0a8892c4eec9d3e39784035eb5492e32a051b
spec/mspire/ident/protein_group_spec.rb	644	2.67 KB	129cb17d321bb1f12439570082820d63e0761b33f0d7cdf82e5618d9a7036dfa
spec/mspire/isotope/aa_spec.rb	644	547 Bytes	91277a2cdccbeb4176c63920fa569990c17cd865eef26647abcd1cdd2a7f2487
spec/mspire/isotope/distribution_spec.rb	664	776 Bytes	62671d8c9fca21a544396e8f8b22f0576d288bd297f976bdb9ccf7c4b5dfbbba
spec/mspire/molecular_formula_spec.rb	664	398 Bytes	57cb342786170a92d2f0fd8b21c28c5c8ffedccfaa31e191dfc0681c26fed3a5
spec/mspire/mzml/cv_spec.rb	644	442 Bytes	987a8ebb0525881ab944344acdf9bfecbbb982aa17a497cba3bec9f4f98c4e9f
spec/mspire/mzml/data_array_spec.rb	664	994 Bytes	8acd6829f67deaa74c66892d19cf1b619db3a312796a2ca0421c47ed1f054c96
spec/mspire/mzml/file_content_spec.rb	644	621 Bytes	ad1254e84012f95ac3e6564f78d6666a324c591abc5ed394493286f0744091d9
spec/mspire/mzml/index_list_spec.rb	644	3.72 KB	373824de2215fc745eb691546cdade4c5dbac6beeb6aabe3ac275327cab6d567
spec/mspire/mzml/plms1_spec.rb	644	1.88 KB	11c04224ad66d568cffc428843425852d6d7ef1548b49a805862abaec211e8f8
spec/mspire/mzml/referenceable_param_group_spec.rb	644	1.12 KB	5517287d2629c78d2cd41e61bc3278ff10ee20ab8992f114910ed1ccc20a0522
spec/mspire/mzml_spec.rb	664	5.56 KB	8aca14bf6644b8407bb9d742fae3b172f4ba5db412d59e28bff669bebf47724d
spec/mspire/peak_spec.rb	644	2.9 KB	5e0a56dd634e4049e8c01e6d9cff869efbd85ced5ae4466e64e10f82e509a2b7
spec/mspire/plms1_spec.rb	644	1.11 KB	b4551d449b5cc061b0824c44eac90038d4e2f56a049c53b5d0e79a6ab2380038
spec/mspire/quant/qspec_spec.rb	644	568 Bytes	c156a83805b3d747a7871d0ec4dd99070950f23fba6af4c11a07e86e03ad3788
spec/mspire/spectrum_spec.rb	644	2.15 KB	43e10365ff67596a03798f4b9bfbfbe5b3d117c32ae4c77f60365c6cbbe8183e
spec/mspire/user_param_spec.rb	644	1.45 KB	f2eeb0c90684c740033cc212ff7f9c1f5417e9ee1947d38ba2dbd6f5abcdfefc
spec/mspire_spec.rb	644	201 Bytes	0ad271676bf5b830103482e6977a0f41e441fa6e00a401eeb8c7afc6f3bddea5
spec/obo_spec.rb	644	809 Bytes	fe19ff53b504c9298f9ab1172eb085b954b9f029c0f4bc8c4c73dce637319a0f
spec/spec_helper.rb	644	683 Bytes	6f0f5cd6767177e19f4075aa9135fa96adb325994e350aee3564544659898472
spec/testfiles/mspire/ident/peptide/db/uni_11_sp_tr.fasta	644	3.92 KB	a4cc630326ac544575a011b1e87556f0fe6fe5a9c40aeaef2340e63ac0a8e530
spec/testfiles/mspire/ident/peptide/db/uni_11_sp_tr.msd_clvg2.min_aaseq4.yml	664	35.6 KB	a056a0caf974be54def3ca8bf6cc2b058f7eb10dd85714eb6de02d762665df7d
spec/testfiles/mspire/mzml/j24z.idx_comp.3.mzML	644	236 KB	73a425421660ef4e1fe11dd96a3583e2cca5de7350a3a230b4d26a149e738636
spec/testfiles/mspire/mzml/mspire_simulated.MSn.check.mzML	664	4.62 KB	1cdd2bec500dbe0f88247d86c1a5667120348c0680d9269ec46bd68c3712b37d
spec/testfiles/mspire/mzml/openms.noidx_nocomp.12.mzML	644	24.2 KB	e568940ff9648624cf62953570364a1da112be6582e3ef6f927f971bd3017106
spec/testfiles/mspire/quant/kill_extra_tabs.rb	755	283 Bytes	e146b55865565c72f88000ab674bc2c7eb62eb6a7f4799d5a799da358b3243af
spec/testfiles/mspire/quant/max_quant_output.provenance.txt	644	389 Bytes	b77e4f42468f37715669a2e77edcfd4e163676c150eb30d0936d71fe00d90068
spec/testfiles/mspire/quant/max_quant_output.txt	644	78.8 KB	d818a52e38e4ac86d74156aa306fc35e86f6a4da0514b64c3493703b9e804521
spec/testfiles/mspire/quant/pdcd5_final.killedextratabs.tsv	644	7.44 KB	16f0438e4ba2f37fc04064037569a308a0e6fab8c07deeea0ebd7b7854058841
spec/testfiles/mspire/quant/pdcd5_final.killedextratabs.tsv_qspecgp	644	21.3 KB	54303835aa6fd3bd12310ae02a8e26836cf25071724d33eae4d69e847324cf10
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spec/testfiles/mspire/quant/pdcd5_lfq_qspec.txt	644	24.5 KB	fbcb78badd6291d860adac5949ba0d7b272d6ea99b367d22a479aa77e658d07e
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