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Versions: 13
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Contents
require 'mspire/cv/paramable'
require 'mspire/mzml/scan'
module Mspire
class Mzml
# MUST supply a *child* term of MS:1000570 (spectra combination) only once
#
# e.g.: MS:1000571 (sum of spectra)
# e.g.: MS:1000573 (median of spectra)
# e.g.: MS:1000575 (mean of spectra)
# e.g.: MS:1000795 (no combination)
class ScanList < Array
include Mspire::CV::Paramable
def initialize
params_init
yield(self) if block_given?
end
def to_xml(builder, default_ids)
builder.scanList(count: self.size) do |sl_n|
super(sl_n)
self.each do |scan|
scan.to_xml(sl_n, default_ids)
end
end
builder
end
def self.from_xml(xml, link)
scan_list = self.new
scan_n = scan_list.describe_from_xml!(xml, link[:ref_hash])
if scan_n
loop do
scan_list << Mspire::Mzml::Scan.from_xml(scan_n, link)
break unless scan_n = scan_n.next
end
end
scan_list
end
alias_method :list_xml, :to_xml
end
end
end
Version data entries
13 entries across 13 versions & 1 rubygems