mspire-0.9.0

https://rubygems.org

id: 37352

number: 0.9.0

platform: ruby

spec_sha256: a4557d202e5d6ab252ca9a11e855a0920dc21846374a249063f7fef1b1e61efd

sha256: ee806019f85bc6bd160e81307f89d984208a7d6fd98adacbba65f3985ff651a7

created_at: 2024-05-13 08:14:16 UTC

updated_at: 2024-05-29 23:45:18 UTC

position: 14

version_data_entries_count: 217

uploaded_at: 2013-08-14 23:52:19 UTC

indexed: true

has_extensions:

extensions:

Gem size: 1 MB

Version Data Entries

Total: 217

Unpacked size: 3.8 MB

Full Name	Mode	Size	SHA
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.travis.yml	100664	94 Bytes	d03a321914a4806aec26d9a1a70b3fdaf0b6f1d1c138d52b84cea1dc624048ae
Gemfile	100664	91 Bytes	2617b8d32455740bc6f337757313c5ee5f7382601c89ffcf3e9a3b2ddbeae3de
LICENSE	100664	2.52 KB	71065bf6d40f3e71898398ec2a65cb107fee35c083166dac99532d117def8dd8
README.md	100664	5.73 KB	9dbde1687dcaffb18841cad65fd4894a2572c58851a29a14ccd661a1f98c1cb6
Rakefile	100664	882 Bytes	148a6043488b616f36fd07f5883ed1c622b98e8fe9f83c0c1b486ca89361bb67
bin/mspire	100775	81 Bytes	36abff58a575477308a0a6cd2ca951a3e39d14e98d446e45ffed0593256d49ad
lib/core_ext/array/in_groups.rb	100664	769 Bytes	26cec67e2cf45aa8a13c4fa68f157119fe46f2e1a2ea1f9750378488fd078251
lib/core_ext/enumerable.rb	100664	290 Bytes	dd065f8d961e4158d019ded937b2eb8f5a5a6b8f498bc8153abc4adc9aa99628
lib/cv.rb	100664	35 Bytes	57dd77ec11f5a0855bc02aa6edd9dc1707de313d9838f9f3abf58789365c1e2b
lib/cv/param.rb	100664	1.41 KB	6f4da27aa29c941f3facdfdb50c275580f420d4a7eb37b768b3e7397f908b314
lib/cv/referenceable_param_group_ref.rb	100664	204 Bytes	22c3e784d87e5a0170ef2ad344efc40826f56cc70f62fbd9f273cb9b2e9387ef
lib/hash/inverse.rb	100644	295 Bytes	0463db62a9475d9f8c28e46c94a6d71d8cdce7a55cb1de7f3e23555c4e9a8887
lib/io/bookmark.rb	100664	345 Bytes	a1248a3a5dc2c1a45bb41a2acb90a7f9e32321f64834b5f214f4ac59acc08bb8
lib/merge.rb	100664	178 Bytes	f390b683b5b2e1a533bc65ffc044a0878059d6e12eddf3995c30de34af8fffde
lib/mspire.rb	100664	162 Bytes	627e17cfdeec179d906530fe7e67ac80c47823e240cf20769cc622d9dc05eeb8
lib/mspire/bin.rb	100664	1.92 KB	37dd6d2945c5c2da51fd09c8ed347124d28c62693e1298dcadbc6e39220abfe8
lib/mspire/commandline.rb	100664	845 Bytes	ed76f197db1badacae704dc8ccf3d47d83b74176828e9c4ebd5f18af5fd51c5d
lib/mspire/cv/obo.rb	100664	405 Bytes	b9b607a38eac4b3a1e855b595760ece4b537ba8c472f1102445c5065fdb6b86e
lib/mspire/cv/param.rb	100664	1.12 KB	f279b0cc6232e282cb1a0921d2c5d200a3da849448e45236634ddb024a5c6759
lib/mspire/cv/paramable.rb	100664	6.11 KB	3d1dea086a642c5c5f9fb0851c39d6b0570ca594440b398fa42004e4ab8940fe
lib/mspire/digester.rb	100664	8.08 KB	54f2f41477229cbb9bcaeb1ce200b7cb853b284968f0bd1c99561e5a0374743b
lib/mspire/error_rate/decoy.rb	100664	1.22 KB	13447d61003da5747bee58c6e2f9d45215d0943e1540b8c636ad21517d71f1b2
lib/mspire/error_rate/qvalue.rb	100664	3.18 KB	59280b8e8e2a011ef3ad8cefda541cd09099afd7096d90219ea82f5f81393a8d
lib/mspire/fasta.rb	100664	2.03 KB	05247eb2bfd9b53905466c4afad0a345a45c6dcd556722a92e14d4f063fafcbe
lib/mspire/ident.rb	100664	1.11 KB	f6ef3385fd8c9ecd12047a3767f1d07014d4e2d3e9b893e4785c144adff6ee2f
lib/mspire/ident/peptide.rb	100664	2.08 KB	b611bbfa45daf5badf255cd2f3a2d6a306fc251e67f408fa209c73e602c81380
lib/mspire/ident/peptide/db.rb	100664	664 Bytes	deb85ee12ebfc8a911a1a8b1430b9f41a56cb1baa1a04ab8a9f8363222dcb329
lib/mspire/ident/peptide/db/creator.rb	100664	9.07 KB	001dc9a537e9802fdffe323d7ab04fab41817c22f471a6144b891b294b8ee64a
lib/mspire/ident/pepxml.rb	100664	4.52 KB	3d85a746cf953634cdab242475e349fed125f118d8776596b7bed6e999131a00
lib/mspire/ident/pepxml/modifications.rb	100664	2.91 KB	ba235ba6ed6e00da193a0ff80903454340fb46b4493582f96acc7c2e5705c0c1
lib/mspire/ident/pepxml/msms_pipeline_analysis.rb	100664	2.2 KB	c1228083d8356be57a1385a85607aaa3a06f771e021c9c9d8fad3fdc3fb46518
lib/mspire/ident/pepxml/msms_run_summary.rb	100664	2.65 KB	4453eca1cb77557474c5dceb6a6f83e87a493467bcdb2f55d2cb3344dd58b135
lib/mspire/ident/pepxml/parameters.rb	100664	243 Bytes	6a27a2e524a3a0411f44e2636c51b85e608956cdf733c7a0d6db5941704a1fde
lib/mspire/ident/pepxml/sample_enzyme.rb	100664	4.62 KB	5ebf24f126ac326e701ebc6795b62f3c9022af977705fe107e32f1d8f6b353e4
lib/mspire/ident/pepxml/search_database.rb	100664	1.28 KB	de9b2f2ac61b03881b596e6b199c3c1d08350da9036ad4c3073050a4b1aad1c1
lib/mspire/ident/pepxml/search_hit.rb	100664	4.32 KB	9e0054b20009d2c16d1e06eaa144ba9d4ccee1b5578ca8acc3de91d14a95f5b4
lib/mspire/ident/pepxml/search_hit/modification_info.rb	100664	2.49 KB	dfcaef448c8ad5cfb743ca1dd398b8ada14b79228379a58d4bc06c3b51dcf725
lib/mspire/ident/pepxml/search_result.rb	100664	862 Bytes	cae5ee1165d5c8ef91cf2f1bee397767beae50cb4022a6e68f58295ef125077d
lib/mspire/ident/pepxml/search_summary.rb	100664	2.79 KB	b87e2cb917073ccd74424cd1fbd0efdbe701294d0d5fbde06e15d29244d34c1f
lib/mspire/ident/pepxml/spectrum_query.rb	100664	2.36 KB	4a4f26260119920e912a9e306ddd32189228eb3a89e2b108f99a61170037a807
lib/mspire/ident/protein.rb	100664	695 Bytes	9c0112a7a8a6d71e00525d3fe2596c41a06939eb633c07a5cd07c1e3bfa077ea
lib/mspire/ident/protein_group.rb	100664	3.64 KB	5e9e641022da19b3c76d493bafd8a2dada9262d9e4053e94f186c0879a60d1be
lib/mspire/ident/search.rb	100664	3.37 KB	77ffd5653d5cd377c971e595ce94be73485dbe7588c45eb10830176356f9b6f8
lib/mspire/imzml/writer.rb	100664	18 KB	34562b57196133af34c44f2dd15bf67e643df40124f08f3d33f76fde3deaacb6
lib/mspire/imzml/writer/commandline.rb	100664	4.69 KB	c7a9af089bb381b9ee5217b9ed6b440ee0fd6a5cb9bd539a00396f7015f2777e
lib/mspire/isotope.rb	100664	3.06 KB	43e97100840094311f32658582f06abf419b2097af8f5cbc120c9dc0d54ecb7d
lib/mspire/isotope/aa.rb	100664	2.39 KB	78069de352369e37c26604d3a3f6fe561cfd8ed261d9e1cc10f553bff35615cd
lib/mspire/isotope/distribution.rb	100664	4.04 KB	588e0d95373c62c4e2f2dafe5504c31e0eabb1e043e70972a7839dbede0aedad
lib/mspire/isotope/nist_isotope_info.yml	100664	19.7 KB	534af2215bc49aca5fb78c4d9f97f6e640a09c34f386671d75f330dfb84b218f
lib/mspire/mascot.rb	100664	63 Bytes	cedeec1ef237db177a411ff3fbfa72c9d7ecf71aabe31a92e4147b24738c0a10
lib/mspire/mass.rb	100664	920 Bytes	df387d71e9299aa6cd38959fe8253c51a6e8262c45e82848067b38687e39803f
lib/mspire/mass/aa.rb	100664	2.1 KB	8fc643ce318f0f510f7f382914147ccf8491733f1bc33c466b21386b7390b27f
lib/mspire/mass/common.rb	100664	856 Bytes	41547c9dbdd565584ea7ad9dd38812af5625e2eea8195c1baf072a1e5a06d19a
lib/mspire/mass/element.rb	100664	790 Bytes	c027aefa4aebec20f8a0131e33b9f335a830cc645a45107e80be460394cdda71
lib/mspire/mass/subatomic.rb	100664	697 Bytes	37e55172af4a2fb085658b2de2823643d9fd3379383e620b606e1cd9d2729e0b
lib/mspire/molecular_formula.rb	100664	4.13 KB	ab442bdb4ffa1fb243831655ec0fc0ddce98f2f9c23229277b87ddc7dc9b98a4
lib/mspire/mzml.rb	100664	10.3 KB	ef8072f9b41d51e6dc851aa879e05b0f99b0f08ee1e758ad2210b4ff7d49efb9
lib/mspire/mzml/activation.rb	100664	1.36 KB	c41b9222abad8a4840e67831eb0c90869526438a42f2372fe92e8bab48f30c65
lib/mspire/mzml/chromatogram.rb	100664	1.93 KB	71d8e6bbad395899afe13ce549a95f4d07f0604eddd9a165f85cd3ed1e9e08fb
lib/mspire/mzml/chromatogram_list.rb	100664	132 Bytes	4cdf255c64e442783a6ea8ab1f43886ea737836466dd973e4b263d7e0fe8d987
lib/mspire/mzml/component.rb	100664	1009 Bytes	f58d840a380e95ae39a4875db3d55371f314ede019482c286761d5eab443e37b
lib/mspire/mzml/contact.rb	100664	392 Bytes	3538ec03307606ba70592a1bc545d03a2152b8f2c02247c82e5b0d643e8e2f7d
lib/mspire/mzml/cv.rb	100664	1.93 KB	03d035bd3df8e983c79cf67256f72f90fc11b47f25c12ac4ddb4ce28d199e2cc
lib/mspire/mzml/data_array.rb	100664	5.1 KB	236785cb0125734a49676b6452f66e6ebaa167cd9b3e7005a99e9b8d84116785
lib/mspire/mzml/data_array_container_like.rb	100664	1.17 KB	a27e90d1354536f0d81a9cd39469dd673d934df6b6eeb114f7d01f4db49a9295
lib/mspire/mzml/data_processing.rb	100664	1.08 KB	1e8432ae726bdc3bdd27de65e6e1a89ef262c056539f095b1f06040437e2018b
lib/mspire/mzml/file_content.rb	100664	604 Bytes	9afa6fbda1ece53a510a967b9adbb899729b9f8384640fbaaa0edd8507138fa9
lib/mspire/mzml/file_description.rb	100664	2.03 KB	4d1c9c34bb2231b07e35c90d4f15e86fce8b8431190ed0bdf4ac9e307c4fad5f
lib/mspire/mzml/index.rb	100664	1.37 KB	6662687129248176a39e92106e2a7e2ac3b45d582794036c52db8f01fb172ccd
lib/mspire/mzml/index_list.rb	100664	3.55 KB	36d6cc4cbce64f63927c0c246fbc9162ec9f65d8600ce3083a65eae6372840b9
lib/mspire/mzml/instrument_configuration.rb	100664	1.81 KB	648053c90c82afb404ef9263b558483257e3bb002393f01a68071091378f0142
lib/mspire/mzml/io_index.rb	100664	1.86 KB	59fbbe30615656287c9b05aa0bce126817d86ce136094e51f8df071ca178008f
lib/mspire/mzml/io_indexable_list.rb	100664	2.34 KB	f161707f3c59ede28f02a232a391529d993c66add41c7348fe0abcc664e352f0
lib/mspire/mzml/isolation_window.rb	100664	784 Bytes	2454c41feabc523e6e55dad0c64ff83fc08482278b472e68c159e2a68242e876
lib/mspire/mzml/list.rb	100664	673 Bytes	97af68a666935660db0843677844cf45c64a8727d9806fbc12a581a4161724a9
lib/mspire/mzml/parser.rb	100664	186 Bytes	f6e4dcc92ac72152a044ec927f1abd4814ea1eb0899d3d2d95e6e8bdad315229
lib/mspire/mzml/plms1.rb	100664	675 Bytes	7c8d51c845e49355205d6fab56c33df513e2455b60c319920e2ac33fa2d01b10
lib/mspire/mzml/processing_method.rb	100664	1.7 KB	d92f6502a872e50cefd334cbc40fd53a3f71ae3cf98bd96e58934a572af1741a
lib/mspire/mzml/product.rb	100664	814 Bytes	04c25417c4651327b95ef6f19349badec11bff61594d6912aee7574e8d81f9df
lib/mspire/mzml/reader.rb	100664	4.62 KB	567790783ad923662c5c13e924d531d61fa58f7fab87a3abf73864cf8171fe4b
lib/mspire/mzml/referenceable_param_group.rb	100664	1.13 KB	7780bd36690c0f07f640ce084fefdd6d23e5af2cb01bdb28f52b9b4b843b62db
lib/mspire/mzml/run.rb	100664	3.38 KB	74a68806387fe7ad6fd102d91e3ee8e24b4b14f45b5f65acf424ea37f20efefd
lib/mspire/mzml/sample.rb	100664	855 Bytes	cdc94517fb4f923a6c9556eb896b4703878dd8ec5c57afc303c270ee98b16084
lib/mspire/mzml/scan.rb	100664	2.21 KB	56f2392b3aa565d10bf75419b56ad6ee5bbb3cb6d3df0ef7f993ff020d85c6a7
lib/mspire/mzml/scan_list.rb	100664	1.11 KB	3238302e60a908f4560a76a97d16f6e721f38fe2585b0498b1f2b5ab7f46405e
lib/mspire/mzml/scan_settings.rb	100664	466 Bytes	2950671c030f9adfb1e83dce2314f2af03eedd0b8d705142a833e28e4210f777
lib/mspire/mzml/scan_window.rb	100664	466 Bytes	33241fdeba25a8091e2a07775d3e29793b5f627901c52b388ba9081c14b938c6
lib/mspire/mzml/selected_ion.rb	100664	553 Bytes	f4e0ee09e3fdeea45d8dd5789d02be3bb31aeabbcc2e53116ba254a86ab724bd
lib/mspire/mzml/software.rb	100664	727 Bytes	7be7f06399cef14aa91b37318f26f009c785aa6effad2071fbac98fa831f508f
lib/mspire/mzml/source_file.rb	100664	1.58 KB	beeeafc70c82406c1f74bb65ddbc8c65fb5c4cee1d52802fe2644ba0db8c4fee
lib/mspire/mzml/spectrum.rb	100664	7.39 KB	374a318a0c1d078006ccdc045b01921e80571f1058296f87b301174d7fb45d97
lib/mspire/mzml/spectrum_list.rb	100664	257 Bytes	a904542e6f16302b90c2507a1ec59363f89340a7f609cf53930b4830799e0bad
lib/mspire/obo.rb	100664	795 Bytes	9bfe48538c57c99317ace0d623cd3b02ef0fd8a5810c73518d595289df2ef687
lib/mspire/peak.rb	100664	424 Bytes	70db8be16218eea24be0c169e08f5e663d436e147d7637e430aa52232c765bfa
lib/mspire/peaklist.rb	100664	12.7 KB	8686a147ef45d78dfeb9ad488ddbd8549a85e60a6303adb9fdfff4384534ee4f
lib/mspire/plms1.rb	100664	4.69 KB	932cf90d6cb576382a4854972ae1af8508372abe160fdc7ddcfef091faf4157c
lib/mspire/quant/cmdline.rb	100644	1.38 KB	43c150b478f8be8fc07dbcc582d5d62593ab75032488abb773fdc6f2df23e601
lib/mspire/quant/protein_group_comparison.rb	100644	661 Bytes	aa640ce122aaee579a3ce84486f4eef5895a71dd93e59547a5eb98c09b15598d
lib/mspire/quant/qspec.rb	100664	3.62 KB	bfa79e9e3bb9e4cfef750e20f8b499005026e098dccc5e44beca679e8f039bc3
lib/mspire/quant/qspec/protein_group_comparison.rb	100664	564 Bytes	c91bd8d79b799736ac0cdb9541ff3098eea0aa4e0e62c8127a59daebc5e22327
lib/mspire/quant/spectral_counts.rb	100644	1.33 KB	09aaf93be93222990e9c7fbad6ff712cf57481de6f2637580fb79625a483d103
lib/mspire/spectrum.rb	100664	303 Bytes	51600d1fcb5a90e4f4a733e0aa5b0c6ec85d9fa45f969819d70ea42b39b489d8
lib/mspire/spectrum/centroid.rb	100664	522 Bytes	fe245cc854270d359a20eabb5c896fabf16ad89a1fc2224bc819f16534647cdd
lib/mspire/spectrum_like.rb	100664	4.18 KB	67aa812153bf0c59b602f59dfb153bdd8902d79151051b4253213a74c1e2bd33
lib/mspire/tagged_peak.rb	100664	967 Bytes	6c280c2f6d0d4a928eb8fc67bc60ccdc351e35ad218922e9f0b061035d0f4f34
lib/mspire/user_param.rb	100664	1.07 KB	c0c6124252bef2745e30de5300b99774e4ec4f3d0ac1a28db98cb30fa8fa8b2e
lib/mspire/version.rb	100664	38 Bytes	d52d066ac0eedf65cea0d9160159d25686e16ce668b087955a5a50dd4fbbcbee
lib/obo/ims.rb	100664	98 Bytes	bb7c7cc0170014201f88ac7a7c1379e5007c2333cd350e747a9529bb7c773f80
lib/obo/ms.rb	100664	98 Bytes	63d4e7fb810eba6678f01a38d531960bee24c0e3a4976379df79b5ec4659ae09
lib/obo/ontology.rb	100664	1.66 KB	00446c4b8d15058e01743ba2d7d105b210c8d7ad41d70c814ca954101156fe69
lib/obo/unit.rb	100664	100 Bytes	74764c9077c98c6ccdc75501005c987122ca66d467dbae61491d43a12d5b392f
lib/openany.rb	100664	435 Bytes	53cd807b8aa300ee99ee6dc7b09d59f465049e7c929f0c4e9ad56b3e26024738
lib/write_file_or_string.rb	100664	366 Bytes	a3a789f787939427c48d98a4fceb6e44e0c2e6e8c10742324202f7e823b1d6b5
mspire.gemspec	100664	1.37 KB	bb01702b68a3b277f885238d9bb569377e3048688952679c45153209e11d1839
obo/ims.obo	100664	19.8 KB	c51ec89820f4d67b02f8cb6274829e6b2f98879b16efe6e2c3635d9caea90154
obo/mod.obo	100664	1.58 MB	116a3d1569a05e19b280d645bcd5490672109f92aefc1327d11fb5b5ffd3534a
obo/ms.obo	100664	440 KB	4a2f1004bad3fabb23c25c7564fa96633d72aba90c8ac28b8d4c684753777e0c
obo/unit.obo	100664	87.1 KB	f87734299c881fc03e7e143d35f7ab7607ac5a1f2a8cad07603e1673ad5a15df
schema/peptide_hit_qvalues.pqh.tsv	100664	170 Bytes	560f8afb26035717f89db97d6fcd10a60e63a2ad1a6c1a9168b25f66acc2b04c
script/download_uniprotkb_db.rb	100700	4.36 KB	64dd34617378f426d831bb90c7b1f5961015c235270b1add14076361a8689124
script/fasta_to_peptide_centric_db.rb	100775	114 Bytes	1ab381316e410da292487dfb379a36d33a372647dfc7afb116167287e7408bfe
script/mascot_dat_to_peptide_hit_qvalues.rb	100775	2.89 KB	699e8426c661e2005776364872f60e35c2853650b53c0a538ff3f0e116c65c0f
script/mass_correct.rb	100700	3.28 KB	30816b6e8aa5c8db44f16c5807960d66eea722c098ae7bc2264253d93db7216e
script/minimal_protein_set.rb	100775	9.92 KB	da7432018df98409669a5c71f8a13b45bf73959631e98d6626b979f3293f9b47
script/mzml_read_binary.rb	100775	709 Bytes	4728c53ff637589547f4c05a917277f0762af0c8e1e1d0b45264da1ec55bbe1e
script/mzml_to_mgf.rb	100755	1.59 KB	ce5d0cbe5e0c80eb41f9c3c40a0bc11f932336720d94e545bf3492ecbb6b7c4a
script/peptide_hit_qvalues_to_spectral_counts_table.rb	100775	9.75 KB	ea8cead8ef46e2a5d3ff856197906c1fea529ea17256fffd1a4278f04064fc6f
script/quant_compare_direct_injections.rb	100775	2.88 KB	b76e23697b2bab99f7ff0e94aa32b4005f986eb889d347b0554cbf0ced74fb21
spec/cv/param_spec.rb	100664	557 Bytes	5fd1bea6bd219c6ee6280ee397aeab9f28bf7577c28e75cf447d04492d9635d6
spec/mspire/bin_spec.rb	100664	2.31 KB	bb1703201dd73b6b7c3a978c32de80fb6c890f9326ad9280fe2fed8f417ccd80
spec/mspire/cv/obo_spec.rb	100664	408 Bytes	4ab9d5e836215cb64ebfec21493dda234d6f801360e069b5b1aefc344ef7ca5f
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spec/mspire/cv/paramable_spec.rb	100664	1.55 KB	95f3b56cf5798114171492481a6869da3180789b51b1a95697e0bc1776a56b89
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spec/mspire/fasta_spec.rb	100664	3.19 KB	f1fe2b244d0992d100d24c323461afa2b80132d4f762f7dead5d6fca98c7d7ec
spec/mspire/ident/peptide/db/creator_spec.rb	100664	2.64 KB	51f8316bcec6539f69a4bd5067bcdd8b43dea9966cdb8536ea40d4adade3c77c
spec/mspire/ident/peptide/db/io_spec.rb	100664	699 Bytes	a4aa9503c3f4f423cef0b7ee0a213ef642aacd4da5f8f007993801f4acccc266
spec/mspire/ident/peptide/db_spec.rb	100664	546 Bytes	4bdd1697d517855388cde88a73fd9757c1bddf55ecf08b59e878649332bc220c
spec/mspire/ident/pepxml/search_hit/modification_info_spec.rb	100664	1.15 KB	d3d48313888f698f9d4dfee3b00956cea3051781bf4dba0367e908a93ec1d0eb
spec/mspire/ident/pepxml_spec.rb	100664	19.7 KB	e1016218b80146866b78c3fda41e3a8f5ef7782aff173b8c1c8278d6314900dd
spec/mspire/ident/protein_group_spec.rb	100664	2.67 KB	129cb17d321bb1f12439570082820d63e0761b33f0d7cdf82e5618d9a7036dfa
spec/mspire/imzml/writer_spec.rb	100664	6.08 KB	ceacc5dd0a17a44fbb4982d5f73e4168404c5c2abe20b77d4b73449d1cc9a57e
spec/mspire/isotope/aa_spec.rb	100664	541 Bytes	956bc276cd6f22c665169e100c80f3a9f3b85439d46d3bf3e1ec4478e708a729
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spec/mspire/mass/aa_spec.rb	100664	427 Bytes	b5ce86d1f23fc59ae5fa400e26bd3bb3b41febd9726e9033ed92925510c69c1a
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spec/mspire/mass/common_spec.rb	100664	462 Bytes	982b655f63481f2f9b779b1e076f1feeb506c446f43a08efc779d7442a31f76a
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spec/mspire/mzml/cv_spec.rb	100664	442 Bytes	987a8ebb0525881ab944344acdf9bfecbbb982aa17a497cba3bec9f4f98c4e9f
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spec/mspire/mzml/plms1_spec.rb	100664	1.61 KB	a3787e8bc6ff870281a3fe2681a6cc7b8f792a1c100a90472698a0d08ae3f093
spec/mspire/mzml/referenceable_param_group_spec.rb	100664	1.14 KB	adc94355e71d916837a4bc607258c67d434ac02bfe0202eadf0043a72c3faf85
spec/mspire/mzml/source_file_spec.rb	100664	651 Bytes	a20c3dde99f6a34cdd3f79e1d8b9ffdf0c1d84ce3f49830a2e4f06a1d0d7c0cf
spec/mspire/mzml/spectrum_list_spec.rb	100664	1.21 KB	582e8693fe7ee5f43ae7f11fb8005f69adb4c909fdc8c65aaa548840d206c697
spec/mspire/mzml/spectrum_spec.rb	100664	1.34 KB	b985413d7d318e30814eb79a3ea27c3f63e960796778a59e6ca2fdc2e4de28c1
spec/mspire/mzml_spec.rb	100664	14.5 KB	8dd542dc45c6685bf51a99d33ce46bcf7a89770a82a083b6cab3cbed24eb370a
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spec/mspire/quant/qspec_spec.rb	100664	568 Bytes	c156a83805b3d747a7871d0ec4dd99070950f23fba6af4c11a07e86e03ad3788
spec/mspire/readme_spec.rb	100664	3.82 KB	ecd28a6615ee064efcf14dd4105fc6b6cf16202b7163d0136271364fb1ad9951
spec/mspire/spectrum_spec.rb	100664	1.23 KB	eb192aa47f99704f3c0fd47d4987013563c28d68d3a9204cfa1ebcc54b0babd4
spec/mspire/user_param_spec.rb	100664	1.45 KB	f2eeb0c90684c740033cc212ff7f9c1f5417e9ee1947d38ba2dbd6f5abcdfefc
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spec/testfiles/mspire/ident/peptide/db/uni_11_sp_tr.fasta	100664	3.92 KB	a4cc630326ac544575a011b1e87556f0fe6fe5a9c40aeaef2340e63ac0a8e530
spec/testfiles/mspire/ident/peptide/db/uni_11_sp_tr.msd_clvg2.min_aaseq4.yml	100664	22.7 KB	7ea4339e4bc018e25e85856fc20be0358a6d69b799122e9ed5c620770668fafd
spec/testfiles/mspire/imzml/1_BB7_SIM_478.5.CHECK.ibd	100664	1.7 KB	a8b6c336759bf3a74527861055cf3600c7eaa5e74df2d6f6dfc16930e55236a5
spec/testfiles/mspire/imzml/1_BB7_SIM_478.5.CHECK.imzML	100664	215 KB	57dca3677fac6f26f3a07a97e6ea3b72bb9f9ce6995d8fdb33ba872216fe37a4
spec/testfiles/mspire/imzml/continuous_binary.CHECK.ibd	100664	64 Bytes	d193a2a55bd7efcdf4ed8c85da71c2a095b3eee7b96fd187626ec6a0179fde00
spec/testfiles/mspire/imzml/processed_binary.CHECK.ibd	100664	88 Bytes	4f4209824c234f3f568e842b27b39479f950bae411197cf5fb432f3b0c844442
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spec/testfiles/mspire/mzml/j24z.idx_comp.3.NORMALIZED.CHECK.mzML	100664	235 KB	48945912d6e56584f732728cbcbd0fb70d95075f101f27fe55ba081c769964d0
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spec/testfiles/mspire/mzml/mspire_simulated.MSn.CHECK.mzML	100664	4.79 KB	0ee5883bacb3cc9380b3605c3a71625e6e3f908e0acc4bb349b8c6577de148eb
spec/testfiles/mspire/mzml/openms.noidx_nocomp.12.mzML	100664	24.2 KB	e568940ff9648624cf62953570364a1da112be6582e3ef6f927f971bd3017106
spec/testfiles/mspire/quant/kill_extra_tabs.rb	100775	283 Bytes	e146b55865565c72f88000ab674bc2c7eb62eb6a7f4799d5a799da358b3243af
spec/testfiles/mspire/quant/max_quant_output.provenance.txt	100664	389 Bytes	b77e4f42468f37715669a2e77edcfd4e163676c150eb30d0936d71fe00d90068
spec/testfiles/mspire/quant/max_quant_output.txt	100664	78.8 KB	d818a52e38e4ac86d74156aa306fc35e86f6a4da0514b64c3493703b9e804521
spec/testfiles/mspire/quant/pdcd5_final.killedextratabs.tsv	100664	7.44 KB	16f0438e4ba2f37fc04064037569a308a0e6fab8c07deeea0ebd7b7854058841
spec/testfiles/mspire/quant/pdcd5_final.killedextratabs.tsv_qspecgp	100664	21.3 KB	54303835aa6fd3bd12310ae02a8e26836cf25071724d33eae4d69e847324cf10
spec/testfiles/mspire/quant/pdcd5_final.killedextratabs.tsv_qspecgp.csv	100664	21.3 KB	54303835aa6fd3bd12310ae02a8e26836cf25071724d33eae4d69e847324cf10
spec/testfiles/mspire/quant/pdcd5_final.txt	100664	10.5 KB	3246b0bc51768e4c9734539e3d23e47efe6927cdebe7bd03bcae5750932f226d
spec/testfiles/mspire/quant/pdcd5_lfq_qspec.CSV.csv	100664	21.8 KB	38d9bbf8d0ac3611634ec4d0b55faa86273f2e7b1147f7c906bca86c2528c8be
spec/testfiles/mspire/quant/pdcd5_lfq_qspec.csv	100664	21.4 KB	d2bd11ff61d593a0cc5727034533ecee065d795fbe814454447226fae518e420
spec/testfiles/mspire/quant/pdcd5_lfq_qspec.oneprot.csv	100664	12.7 KB	d28c0c67c7192cbb515ede5c016b8f44865b942d161771ed1306c2a19e841232
spec/testfiles/mspire/quant/pdcd5_lfq_qspec.oneprot.tsv	100664	12.7 KB	8243ca6b66821c755a0febfb1ca0c91c7ee660f3d312fd2369bf6490e4fa7cc8
spec/testfiles/mspire/quant/pdcd5_lfq_qspec.oneprot.tsv_qspecgp	100664	13.2 KB	9c4ff27e0e6d069ef50ecdfeceb7793ecd630ddab5e623338ac23daad4a28b8b
spec/testfiles/mspire/quant/pdcd5_lfq_qspec.oneprot.tsv_qspecgp.csv	100664	13.2 KB	9c4ff27e0e6d069ef50ecdfeceb7793ecd630ddab5e623338ac23daad4a28b8b
spec/testfiles/mspire/quant/pdcd5_lfq_qspec.txt	100664	24.5 KB	fbcb78badd6291d860adac5949ba0d7b272d6ea99b367d22a479aa77e658d07e
spec/testfiles/mspire/quant/pdcd5_lfq_tabdel.txt	100664	9.82 KB	9b601eddb50c3bc53d8ff8d4bd8bd10fb2ac14fede6f743f8a0ceb49fcab41f0
spec/testfiles/mspire/quant/pdcd5_lfq_tabdel.txt_qspecgp	100664	8.41 KB	8f4a0d5f7b770424204a722c6d0902c4bd44c6ba94752b01f69784df8a597cbc
spec/testfiles/mspire/quant/remove_rest_of_proteins.rb	100664	263 Bytes	4c50467655d8ba2c9fd6430773a5bd9289f39294d40f80541cc22e26455696de
spec/testfiles/mspire/quant/unlog_transform.rb	100664	228 Bytes	5a39e57c6d9f6e52c3ed2f35ee99e6621a3851e4b28d5f033b00c39bc5a3b098
spec/testfiles/plms1/output.key	100664	148 Bytes	292b7a52fbd48cee4cea63090a2fba82036c41dee11a0c475fb5b09cd90739e3
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lib/mspire/ident/peptide/db/io.rb	100664	1.53 KB	5432e2d5ff999b96a96d1e3f5141da434196aa0ecfdd04c6f8cbd12972e4a5fc
lib/mspire/ident/peptide_hit.rb	100664	534 Bytes	e9cce04e787696cd1099894766dcb7f8214db07678cfd8f96ccd996c83e6d70d
lib/mspire/ident/peptide_hit/qvalue.rb	100664	1.86 KB	e9d89a30b7197d36a26a997f3110ac17eaa8f2ad2dee556144d8de4f7668b950
lib/mspire/mass/all.rb	100664	1.09 KB	9029ac3e94932263040b530c09795ad1eaae030153186cd5f4e65008da02cd24
lib/mspire/mass/util.rb	100664	162 Bytes	12e0886a08c75366963f4b91146cb8b73b92b8a21831084516b2d599f57ae7ae
lib/mspire/mzml/precursor.rb	100664	2.58 KB	7120ff8bfd8aa4d245d756313e7352fb4e859f19bbe785ccb79642780321eab5
script/accession_quantifier.rb	100664	6.87 KB	f11d31aa3af56b486b02926e563b6ab2269b435ca0fc21b3ba9e0237d5e6b862
spec/mspire/ident/pepxml/sample_enzyme_spec.rb	100664	4.64 KB	142b00b032a85ea2097bd39fc456aa86584a63497314c4816fe80540597c8292
spec/obo_spec.rb	100664	1.21 KB	723a3d646cfa625cdd2b2714d28c5cfe9007a3a5bbc41e003b89f5d0e755a5c9
spec/testfiles/mspire/quant/pdcd5_final.txt_qspecgp	100664	0 Bytes	e3b0c44298fc1c149afbf4c8996fb92427ae41e4649b934ca495991b7852b855