bio-vcf-0.9.0

https://rubygems.org

bio-vcf

quick gemspec

.gem

.gem metadata (gemspec)

.gemspec

id: 601085

number: 0.9.0

platform: ruby

spec_sha256: b446ebb89531eec1f12fc0d7b58f5d283ca9956af14790feb4198925f715d180

sha256: 5e7482aed82cb7db3cf7789f7fd18ee5e6ae079d59bc7d9b8d28df164e1d640d

created_at: 2024-05-13 08:22:38 UTC

updated_at: 2024-06-09 10:55:16 UTC

position: 3

version_data_entries_count: 93

uploaded_at: 2015-08-16 16:48:36 UTC

indexed: true

has_extensions:

extensions:

Gem size: 597 KB

Version Data Entries

Total: 93

Unpacked size: 2.97 MB

Full NameModeUIDGIDMtimeLinknameSizeSHA
Gemfile10064400264 Bytesaae8ed652613191f0a31da6f00e1d60fb61d839bffd1c2e949ff896613febe0b
LICENSE.txt100644001.03 KB94650b148159cdf58f65722c12eed040e31a5c26eacef76a79026f470d2dfdbd
README.md1006440029.8 KB325828226d2399b66b01eaa84e52112b32f2838eab804bd9e19f34d482848283
Rakefile10064400485 Bytes6990d63dc12dd4298f383d249e31c22f9cf338fdc5892ef885feb6bf8c548114
TAGS100644005.12 KB64c7119b3185c8fde28bc4129d702a821d1ba2f94dfdaa7e5a7b4738b3461c22
VERSION100644006 Bytes9d8c94f1ad3ea96b1e2ac4914fda4cb93c76b4a3e0d8cc6dd8976d6c0b227d15
bin/bio-vcf1007550012.7 KB197d03176a775b84b5e199f2fe6d3f8d267886492b3450b5bf50e5b388d33fa6
bio-vcf.gemspec100644001.85 KB0b107ee498b55a1513e86065d999bdc2296b4274626f483caccb25509e42fb89
.travis.yml10064400458 Bytes7f80a54efd388bb3056a4f91ff86f212460d0299f8b442dd58b3cc80e60697c8
features/cli.feature100644003.61 KBa9827c29a50b0dfa6269aac88000f0a3c9a4ced53dad1556e1d5d779491f078c
features/diff_count.feature100644001.2 KBb830061c4198658ccd2c22aba347926011a474bf9249cc77221960420a78fe56
features/multisample.feature100644004.39 KB3ef4a3f7238d052a31016434c8e8fad1a489a28eb7b8b798e7af24e7d03b9eff
features/sfilter.feature100644002.02 KB5313d3b5e6c4303e4e62896c62ed1b414ad2ce8e317e4daed81390557b8642b2
features/somaticsniper.feature100644003.49 KBb8d90a5265e8757d2782de71c59d98512cea21ccd05abc0651e8584f7f946c05
features/step_definitions/bio-vcf_steps.rb100644000 Bytese3b0c44298fc1c149afbf4c8996fb92427ae41e4649b934ca495991b7852b855
features/step_definitions/cli-feature.rb10064400630 Bytes7535ca59a8e4d023bae55199f22f54e9871a8f4a461c45906568dfff559a22d4
features/step_definitions/diff_count.rb100644001.53 KB90c264dddbcdd95af7f565319ea653bd4fb3d0531142f0fc0f02445178a1e7e7
features/step_definitions/multisample.rb100644005.63 KB2fd8eee9c34f0965bec6c4480e32c512c7dbf2400df6d19e700eeeb3d8e76d61
features/step_definitions/sfilter.rb100644004.01 KB8f525509c15464e0ddc1d9db8958d94e7bebe0f0ab1670104e8c395e11878c97
features/step_definitions/somaticsniper.rb100644003.54 KB0d235a16e3cde8d1958d332dd396c3490a59ce9c84ebf59000956202a44a07a0
features/step_definitions/vcf_header.rb100644001.32 KBb96f116786fe7463d6afbf66b5100b9072b02747d04686b4845164848119ca72
features/support/env.rb10064400349 Bytesc517d06abb678007a535913de4574cbdd31a41da3a29eb5e0cf33ee834017787
features/vcf_header.feature100644001.87 KB5c1821b91b4cf14275ae3e0181f4d9971c4e3a6b90c862e3a48593edabab8dd5
lib/bio-vcf.rb10064400626 Bytes39ef0ea85e65a0a7ad3476ae04c0adc8cd40a360b253f66919c4511af673313f
lib/bio-vcf/bedfilter.rb100644001.04 KBc1834c35fdcba6f76236a4c9ce40564bb728ce4a06a6ce8a044647ef12167ad7
lib/bio-vcf/pcows.rb100644005.55 KB035fe1acd6e963af8dc3c3d914de9d1daaf750bfc771e73a5a888b1acae768d5
lib/bio-vcf/template.rb100644001.39 KB7863be7c7cae48ffb11b202ff6c49e5de7bd9a803bd9317bdead71b8b67fc619
lib/bio-vcf/utils.rb10064400483 Bytescc07ff267f5a8e0c8ef55cc80389038b0efa8610f68a606a58910ed811f5ba16
lib/bio-vcf/variant.rb100644001019 Bytese58e581d2e45f709ac7d54d8ea34a8ebf7fe402bced2b6d85d7e64db441aedf3
lib/bio-vcf/vcf.rb1006440019 Bytes425411c7c88a0c3c76ee8939716cf112c7db5eef05762fa753a50892ec7c143a
lib/bio-vcf/vcfgenotypefield.rb100644005.03 KBd892140ffae0950e1e82935816ed1dbcd18509d507811952963cac5d10442453
lib/bio-vcf/vcfheader.rb100644004.55 KBc02927ff42aad3c8753e7f9311c9a1a8c4523ff37b16ae17dae06bbbf0c437f0
lib/bio-vcf/vcfheader_line.rb1006440024.6 KB7f0d778ef4c1934680a555b529d680fdd163b7d18319f630f57f40175ceb55ff
lib/bio-vcf/vcfline.rb10064400409 Bytesbd3340b343773950647f370a4184972661e4a5e2358794d97d030e033e5cad6f
lib/bio-vcf/vcfrdf.rb100644003.34 KBe193c21376598fe3c3ec403b6337550f5bbca9764dbf5b5bf20770b79e3ad75b
lib/bio-vcf/vcfrecord.rb100644006.32 KBbb404e849ba5987dad3bd3d64aecf4d918b888afb6e8acb09a036a6280887d34
lib/bio-vcf/vcfsample.rb100644004.43 KB456ba0037c18508e920cb1ea5a626d76cc05868e90619e3bedbfb28eb8fad8f1
lib/bio-vcf/vcfstatistics.rb10064400576 Bytesf137ef2e325bf98dd54a88f46992d1170bc32df53aa4a62c27510a1959831c64
ragel/gen_vcfheaderline_parser.rl100644009.6 KB08afd048e91718273b0a6bda1d54f9e7a18084a35a3e241e72ba4195b428c558
ragel/generate.sh10075500174 Bytesf5ce02213b64f6ecda00fa28e90b8a152de571c1c62cf52e864af80ce16c0e9d
template/gatk_vcf2rdf.erb10064400949 Bytesb7440a2dd2a662d0c10cba548c15b0ba3bfbfe0fd30304ed71b6260db0a124cb
template/vcf2json.erb10064400371 Bytesc835d4cdd8eed57fadf36edfca0a045597e60218f63b9c686673cbd2a46d22e0
template/vcf2json_full_header.erb10064400496 Bytes3a25b97bc613ab38b1d337778964306d75423ba1ab78c499b5d71f952640343b
template/vcf2json_use_meta.erb10064400969 Bytes2d6dc6d209f9a16e5ab15de8a665e5690ad0df678d42b9995aabd28dfc2fbf1d
template/vcf2rdf.erb10064400330 Bytes3bbbc26bddc85d22e6ab9640b68112cc58dddbcd7699bb2f2065444fcfdf77df
template/vcf2rdf_header.erb10064400740 Bytes1097e8b0e10bcbcc826a8040961ee72b0ec29990d8bbdf76199e5745bfa96c12
test/data/input/dbsnp.vcf1006440057.9 KBc18baf1fe6d07c74e668a65f643f51ab28d33e9c27ef1a0ecea5504fc583d253
test/data/input/gatk_exome.vcf1006440041.3 KB8ee6e7d4e40c32f5b99910fe8d062125243a127cabe06ea671c26a4f8746ee93
test/data/input/gatk_wgs.vcf10064400278 KBc8f21348d1f5ea80808d3f8dc529af5acd0222f0fb1c6e347a64a688c036bd3a
test/data/input/multisample.vcf1006440024.9 KB356ceffe21668ef5a8f30bb4bf7a69ef8032c8e1628fd80d33411e1660a0898e
test/data/input/somaticsniper.vcf1006440013.3 KBfd8726fda7cc01c38ad32e0cbe0b3b5f70649208e8b101799aecb27bff6bf93a
test/data/input/test.bed1006440016.8 KBb2962fd1a903742e96af283ae1521df82ae29f08119a408fad643e02e60ede99
test/data/regression/eval_once-stderr.new1006440070 Bytesb258983bbe5c48f16f9e097d849b4141a54fbc4813bc99cccc11b8b06f1ff8d3
test/data/regression/eval_once.new100644004.02 KBbeb76113b2367c4e65d0f3778a9bf97318376f41ef54e97c93353af1a1409b0f
test/data/regression/eval_once.ref100644004.02 KBbeb76113b2367c4e65d0f3778a9bf97318376f41ef54e97c93353af1a1409b0f
test/data/regression/eval_r.info.dp-stderr.new10064400256 Bytes7de3cf8d31be1e3ae202e47efb0a18fa2280db9008a4c1aac6b7aa252abeaf2e
test/data/regression/eval_r.info.dp.new1006440011.3 KBf0ddc7873948fe13c8ff9796a408392eee4a064e9e4d3d6836227f8550f15e23
test/data/regression/eval_r.info.dp.ref1006440011.3 KBf0ddc7873948fe13c8ff9796a408392eee4a064e9e4d3d6836227f8550f15e23
test/data/regression/ifilter_s.dp-stderr.new100644001.39 KB263bc9d437c1520a42e4b183441ba1f60602475e3c955acb3919d2470b3466f5
test/data/regression/ifilter_s.dp.new100644001.04 KB38d86ea18810e0d4a52301d048bb5e200302513e1a627add203d8cf5d58b96b5
test/data/regression/ifilter_s.dp.ref100644001.04 KB38d86ea18810e0d4a52301d048bb5e200302513e1a627add203d8cf5d58b96b5
test/data/regression/r.info.dp-stderr.new10064400254 Bytes1e45f7b020206306e1f541c0ba98d719e47cb2e5a7a1963beed8fb61d8744d73
test/data/regression/r.info.dp.new1006440024.1 KBc0200725e3f37f4c691949f893a06e56559df5314baec8b8b901013e616dabfc
test/data/regression/r.info.dp.ref1006440024.1 KBc0200725e3f37f4c691949f893a06e56559df5314baec8b8b901013e616dabfc
test/data/regression/rewrite.info.sample-stderr.new10064400254 Bytesd538c4c0e780e558f7db24de8ce7284f78578d14c5d9a0ea059b8ef5fc80b7c3
test/data/regression/rewrite.info.sample.new1006440025.3 KBa6725a2a963b866366ce598c637dfd8a486a2a3e8572684170b2953c8b9a55d9
test/data/regression/rewrite.info.sample.ref1006440025.3 KBa6725a2a963b866366ce598c637dfd8a486a2a3e8572684170b2953c8b9a55d9
test/data/regression/s.dp-stderr.new10064400640 Bytes2aa00dc21aebfd3e7f366a3bb7c31c8cb870e0b1665f7f359e7a865ad11b562f
test/data/regression/s.dp.new1006440023.4 KB0ae234d11416d79506a1e673907ce8c366b0ccd8ed86726b17964405c645f82c
test/data/regression/s.dp.ref1006440023.4 KB0ae234d11416d79506a1e673907ce8c366b0ccd8ed86726b17964405c645f82c
test/data/regression/seval_s.dp-stderr.new10064400256 Bytesc6e590b1eeef98cb733ff4620e643ab453eb0a405fa6908fd4ed33eedd56d556
test/data/regression/seval_s.dp.new100644001.15 KBbd3f693badda7474b6c4f7a37e646b6a5b02e74ee628a17374f771f61c233294
test/data/regression/seval_s.dp.ref100644001.15 KBbd3f693badda7474b6c4f7a37e646b6a5b02e74ee628a17374f771f61c233294
test/data/regression/sfilter_seval_s.dp-stderr.new10064400638 Bytes87831f61ca5067628686ac57d48374d6399de21d542e01e0d436055d840de122
test/data/regression/sfilter_seval_s.dp.new100644001.04 KBe9dba3a4bbe1378132fd8ea44a302303ad38d14b277c45483d7901be126b654d
test/data/regression/sfilter_seval_s.dp.ref100644001.04 KBe9dba3a4bbe1378132fd8ea44a302303ad38d14b277c45483d7901be126b654d
test/data/regression/thread4-stderr.new10064400254 Bytesbfc0856da52f434121d616349bd819cc430d29c514670babd52836a22a8627d6
test/data/regression/thread4.new1006440024.9 KB356ceffe21668ef5a8f30bb4bf7a69ef8032c8e1628fd80d33411e1660a0898e
test/data/regression/thread4.ref1006440024.9 KB356ceffe21668ef5a8f30bb4bf7a69ef8032c8e1628fd80d33411e1660a0898e
test/data/regression/thread4_4-stderr.new10064400904 Bytes43ca8f8de3f187a983b2380b2d611f05d2fe6ea89620f4b019336202ef1b3135
test/data/regression/thread4_4.new1006440024.9 KB356ceffe21668ef5a8f30bb4bf7a69ef8032c8e1628fd80d33411e1660a0898e
test/data/regression/thread4_4.ref1006440024.9 KB356ceffe21668ef5a8f30bb4bf7a69ef8032c8e1628fd80d33411e1660a0898e
test/data/regression/thread4_4_failed_filter-stderr.new10064400246 Bytes1fb41d6e16eec086702994fdb560b908f8fac6f6fb304877795919fe9517640f
test/data/regression/thread4_4_failed_filter-stderr.ref10064400246 Bytes1fb41d6e16eec086702994fdb560b908f8fac6f6fb304877795919fe9517640f
test/data/regression/thread4_4_failed_filter.new100644006.67 KB4790bdebd8cb4016c0b8006164d91c061780b829cf64898457d6cc95367b61af
test/data/regression/vcf2json_full_header-stderr.new10064400256 Bytes966d07a6bee17f39a8369f8a8c0fe65fc5d13feecb9168163dc585e0c616a0d9
test/data/regression/vcf2json_full_header.new1006440016.6 KB72a6ec0e483e5e56dcac79684f9601de67627e9276f35bd48c44e014c5076a3f
test/data/regression/vcf2json_full_header.ref1006440016.6 KB72a6ec0e483e5e56dcac79684f9601de67627e9276f35bd48c44e014c5076a3f
test/data/regression/vcf2json_use_meta-stderr.new10064400256 Bytes7c1f365e1448c39c278434f4e156f116f80b3f8787bfa080bb179baabcae5e9e
test/data/regression/vcf2json_use_meta.new1006440057.9 KB9482d515d90567d2ad0d7821ba903f8801ec1c1d1907f1d7b153c00fc7948e06
test/data/regression/vcf2json_use_meta.ref1006440057.9 KB9482d515d90567d2ad0d7821ba903f8801ec1c1d1907f1d7b153c00fc7948e06
test/performance/metrics.md100644005.19 KB24866aac4c4d53a23aca25bc4867fd922b52a670ce5c13b9a727e439f02ba4be
test/tmp/test.vcf100644001.96 MB8ef17fe9c9ac93a52c9a5fa2ba07fc57fff04b30ba392ac1968ceb899d4ff7a1