lib/bio-vcf.rb | 100644 | 0 | 0 | | | 626 Bytes | 39ef0ea85e65a0a7ad3476ae04c0adc8cd40a360b253f66919c4511af673313f |
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bin/bio-vcf | 100755 | 0 | 0 | | | 12.7 KB | b6d921fd50dc486c3cb9d0fc89a0df6c502304fa1d0422eef6925e0aeef0d8cb |
bio-vcf.gemspec | 100644 | 0 | 0 | | | 3.79 KB | 91b9a445ae06781d8ec335f4963726c34d4318ec7dcd3565c66f3f6c971af9ca |
features/cli.feature | 100644 | 0 | 0 | | | 3.35 KB | f75ed819dc6c7e2953ed3e07428207a370aa98226f97cfc1b599d66172bfd70e |
features/diff_count.feature | 100644 | 0 | 0 | | | 1.2 KB | b830061c4198658ccd2c22aba347926011a474bf9249cc77221960420a78fe56 |
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features/somaticsniper.feature | 100644 | 0 | 0 | | | 3.49 KB | b8d90a5265e8757d2782de71c59d98512cea21ccd05abc0651e8584f7f946c05 |
features/step_definitions/bio-vcf_steps.rb | 100644 | 0 | 0 | | | 0 Bytes | e3b0c44298fc1c149afbf4c8996fb92427ae41e4649b934ca495991b7852b855 |
features/step_definitions/cli-feature.rb | 100644 | 0 | 0 | | | 626 Bytes | 311e23bfcd0a82c7bb5f6aca206eb323ce2772f584508d0391de2c73ca214ea3 |
features/step_definitions/diff_count.rb | 100644 | 0 | 0 | | | 1.53 KB | 90c264dddbcdd95af7f565319ea653bd4fb3d0531142f0fc0f02445178a1e7e7 |
features/step_definitions/multisample.rb | 100644 | 0 | 0 | | | 4.74 KB | 63879c099693548813a46748cfa497fc915ee1e1ad7fe34cb6710efc4bfba9bd |
features/step_definitions/sfilter.rb | 100644 | 0 | 0 | | | 4.01 KB | 8f525509c15464e0ddc1d9db8958d94e7bebe0f0ab1670104e8c395e11878c97 |
features/step_definitions/somaticsniper.rb | 100644 | 0 | 0 | | | 3.54 KB | 0d235a16e3cde8d1958d332dd396c3490a59ce9c84ebf59000956202a44a07a0 |
features/step_definitions/vcf_header.rb | 100644 | 0 | 0 | | | 1.32 KB | 990c9208b2c9d0b73d0876462942d821aa1f364ec820ce6ac4286ca931d78ce2 |
features/support/env.rb | 100644 | 0 | 0 | | | 560 Bytes | 3952d6d2254d9845b6d7e471c0a7f445ea1c7dadd3fe937a26d2797a1d4f05c2 |
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lib/bio-vcf/bedfilter.rb | 100644 | 0 | 0 | | | 1.04 KB | c1834c35fdcba6f76236a4c9ce40564bb728ce4a06a6ce8a044647ef12167ad7 |
lib/bio-vcf/template.rb | 100644 | 0 | 0 | | | 1.39 KB | 7863be7c7cae48ffb11b202ff6c49e5de7bd9a803bd9317bdead71b8b67fc619 |
lib/bio-vcf/utils.rb | 100644 | 0 | 0 | | | 483 Bytes | cc07ff267f5a8e0c8ef55cc80389038b0efa8610f68a606a58910ed811f5ba16 |
lib/bio-vcf/variant.rb | 100644 | 0 | 0 | | | 1019 Bytes | e58e581d2e45f709ac7d54d8ea34a8ebf7fe402bced2b6d85d7e64db441aedf3 |
lib/bio-vcf/vcf.rb | 100644 | 0 | 0 | | | 19 Bytes | 425411c7c88a0c3c76ee8939716cf112c7db5eef05762fa753a50892ec7c143a |
lib/bio-vcf/vcfgenotypefield.rb | 100644 | 0 | 0 | | | 5.03 KB | d892140ffae0950e1e82935816ed1dbcd18509d507811952963cac5d10442453 |
lib/bio-vcf/vcfheader.rb | 100644 | 0 | 0 | | | 4.01 KB | 3f45081e6dfb98cdd4e323472148099090271a81bda76e78a1c53569ca955c4e |
lib/bio-vcf/vcfheader_line.rb | 100644 | 0 | 0 | | | 12 KB | 2819f28bea087ccdf3ccf95b2a6265c7a0a0480a0c7a022bb27c59c2fbc788e0 |
lib/bio-vcf/vcfline.rb | 100644 | 0 | 0 | | | 409 Bytes | bd3340b343773950647f370a4184972661e4a5e2358794d97d030e033e5cad6f |
lib/bio-vcf/vcfrdf.rb | 100644 | 0 | 0 | | | 3.34 KB | e193c21376598fe3c3ec403b6337550f5bbca9764dbf5b5bf20770b79e3ad75b |
lib/bio-vcf/vcfrecord.rb | 100644 | 0 | 0 | | | 6.13 KB | 053387017fa4a9021254002037fb63d2496afffa11da20f365dff36c04c80d6e |
lib/bio-vcf/vcfsample.rb | 100644 | 0 | 0 | | | 4.43 KB | 456ba0037c18508e920cb1ea5a626d76cc05868e90619e3bedbfb28eb8fad8f1 |
lib/bio-vcf/vcfstatistics.rb | 100644 | 0 | 0 | | | 576 Bytes | f137ef2e325bf98dd54a88f46992d1170bc32df53aa4a62c27510a1959831c64 |
ragel/gen_vcfheaderline_parser.rb | 100644 | 0 | 0 | | | 12 KB | 2819f28bea087ccdf3ccf95b2a6265c7a0a0480a0c7a022bb27c59c2fbc788e0 |
ragel/gen_vcfheaderline_parser.rl | 100644 | 0 | 0 | | | 4.03 KB | 6ea7fb05b3da7c7d6131812e32d964f28255ad14773209e0cf3e34633836c87b |
ragel/generate.sh | 100755 | 0 | 0 | | | 151 Bytes | b5b627156cf89cca7bc0c8f5a069b5a84123c65c5b8346343ed6af40e7b6e875 |
template/gatk_vcf2rdf.erb | 100644 | 0 | 0 | | | 949 Bytes | b7440a2dd2a662d0c10cba548c15b0ba3bfbfe0fd30304ed71b6260db0a124cb |
template/vcf2json.erb | 100644 | 0 | 0 | | | 354 Bytes | cfd88e5552f306005e49a686785a1bcb9335b187f86edaa14a40b487dba58d59 |
template/vcf2json_full_header.erb | 100644 | 0 | 0 | | | 487 Bytes | abdce5b8102c28bfeb0e448332febc70aa6e00816ca628c95d34491fc8224b93 |
template/vcf2json_use_meta.erb | 100644 | 0 | 0 | | | 926 Bytes | 8f731d28eee8790ce5ac1b5509211f6a219cf63569dd222717f7705a55c83cda |
template/vcf2rdf.erb | 100644 | 0 | 0 | | | 330 Bytes | 3bbbc26bddc85d22e6ab9640b68112cc58dddbcd7699bb2f2065444fcfdf77df |
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test/data/input/dbsnp.vcf | 100644 | 0 | 0 | | | 57.9 KB | c18baf1fe6d07c74e668a65f643f51ab28d33e9c27ef1a0ecea5504fc583d253 |
test/data/input/multisample.vcf | 100644 | 0 | 0 | | | 24.9 KB | 356ceffe21668ef5a8f30bb4bf7a69ef8032c8e1628fd80d33411e1660a0898e |
test/data/input/somaticsniper.vcf | 100644 | 0 | 0 | | | 13.3 KB | fd8726fda7cc01c38ad32e0cbe0b3b5f70649208e8b101799aecb27bff6bf93a |
test/data/regression/eval_r.info.dp.ref | 100644 | 0 | 0 | | | 11.3 KB | f0ddc7873948fe13c8ff9796a408392eee4a064e9e4d3d6836227f8550f15e23 |
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test/data/regression/thread4.ref | 100644 | 0 | 0 | | | 24.9 KB | 356ceffe21668ef5a8f30bb4bf7a69ef8032c8e1628fd80d33411e1660a0898e |
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test/performance/metrics.md | 100644 | 0 | 0 | | | 4.23 KB | 939fd9e24c438d63633ad54b06fc8753ebf56074b8c568113fdfc11dd5eb1033 |