.travis.yml | 100644 | 0 | 0 | | | 305 Bytes | fc603b3a1590efee0d35dc3e06208b452c268e3e81522c2c4d044c53295a7697 |
Gemfile | 100644 | 0 | 0 | | | 449 Bytes | 00959fe29308fee6c3e4c9d785af449a98a70f1b54256af408cad8b5b5e5d287 |
Gemfile.lock | 100644 | 0 | 0 | | | 1.74 KB | 00ae0043342442b14310aca03ad41772ced661339ddd6be9494a9a6ec4e494fd |
LICENSE.txt | 100644 | 0 | 0 | | | 1.03 KB | 94650b148159cdf58f65722c12eed040e31a5c26eacef76a79026f470d2dfdbd |
README.md | 100644 | 0 | 0 | | | 27.7 KB | dba7a1254a8de59fe83cc952891234a622142f82265797f97e2fa5fe6f50e898 |
Rakefile | 100644 | 0 | 0 | | | 1.57 KB | 315b976519548ecd3912f634a3173be941433b15b7c5966384ea479a50deb2f5 |
VERSION | 100644 | 0 | 0 | | | 6 Bytes | aaf6721dc37c40b4233accfc081f25776ff3bd1d2a4b9d5cea760d1c2cf86665 |
bin/bio-vcf | 100755 | 0 | 0 | | | 12.5 KB | 9334c148f8e70d1138902b10323184ffa3cace55798d73138ab2dbe6ab8d3039 |
bio-vcf.gemspec | 100644 | 0 | 0 | | | 3.44 KB | 07f9faea3a1d8855c23831a41d70800351fd78cd1d54294e050ee41c0d0bef78 |
features/cli.feature | 100644 | 0 | 0 | | | 2.77 KB | f023e362ea04e922e641f0b7580de86ff9d802d448400c24fbc32f1c6088f553 |
features/diff_count.feature | 100644 | 0 | 0 | | | 1.2 KB | b830061c4198658ccd2c22aba347926011a474bf9249cc77221960420a78fe56 |
features/multisample.feature | 100644 | 0 | 0 | | | 3.63 KB | 048dd01ba3d483599986874c91a6335468e19add82f285aad4502ae4486a0f3d |
features/sfilter.feature | 100644 | 0 | 0 | | | 2.02 KB | 5313d3b5e6c4303e4e62896c62ed1b414ad2ce8e317e4daed81390557b8642b2 |
features/somaticsniper.feature | 100644 | 0 | 0 | | | 3.49 KB | b8d90a5265e8757d2782de71c59d98512cea21ccd05abc0651e8584f7f946c05 |
features/step_definitions/bio-vcf_steps.rb | 100644 | 0 | 0 | | | 0 Bytes | e3b0c44298fc1c149afbf4c8996fb92427ae41e4649b934ca495991b7852b855 |
features/step_definitions/cli-feature.rb | 100644 | 0 | 0 | | | 609 Bytes | a58c89bbe0c7e012ae0960e67a3e2ffdaf423394f12b58d80eec77f740c4acfe |
features/step_definitions/diff_count.rb | 100644 | 0 | 0 | | | 1.53 KB | 90c264dddbcdd95af7f565319ea653bd4fb3d0531142f0fc0f02445178a1e7e7 |
features/step_definitions/multisample.rb | 100644 | 0 | 0 | | | 4.74 KB | 63879c099693548813a46748cfa497fc915ee1e1ad7fe34cb6710efc4bfba9bd |
features/step_definitions/sfilter.rb | 100644 | 0 | 0 | | | 4.01 KB | 8f525509c15464e0ddc1d9db8958d94e7bebe0f0ab1670104e8c395e11878c97 |
features/step_definitions/somaticsniper.rb | 100644 | 0 | 0 | | | 3.54 KB | 0d235a16e3cde8d1958d332dd396c3490a59ce9c84ebf59000956202a44a07a0 |
features/support/env.rb | 100644 | 0 | 0 | | | 560 Bytes | 3952d6d2254d9845b6d7e471c0a7f445ea1c7dadd3fe937a26d2797a1d4f05c2 |
lib/bio-vcf.rb | 100644 | 0 | 0 | | | 593 Bytes | c8c96ea4f4ba68cd2a79e06f1e6f3acc9cb780f0ebadd6ff861b89b7623e5eaf |
lib/bio-vcf/bedfilter.rb | 100644 | 0 | 0 | | | 1.04 KB | c1834c35fdcba6f76236a4c9ce40564bb728ce4a06a6ce8a044647ef12167ad7 |
lib/bio-vcf/template.rb | 100644 | 0 | 0 | | | 1.39 KB | 7863be7c7cae48ffb11b202ff6c49e5de7bd9a803bd9317bdead71b8b67fc619 |
lib/bio-vcf/utils.rb | 100644 | 0 | 0 | | | 483 Bytes | cc07ff267f5a8e0c8ef55cc80389038b0efa8610f68a606a58910ed811f5ba16 |
lib/bio-vcf/variant.rb | 100644 | 0 | 0 | | | 1019 Bytes | e58e581d2e45f709ac7d54d8ea34a8ebf7fe402bced2b6d85d7e64db441aedf3 |
lib/bio-vcf/vcf.rb | 100644 | 0 | 0 | | | 19 Bytes | 425411c7c88a0c3c76ee8939716cf112c7db5eef05762fa753a50892ec7c143a |
lib/bio-vcf/vcfgenotypefield.rb | 100644 | 0 | 0 | | | 5.03 KB | d892140ffae0950e1e82935816ed1dbcd18509d507811952963cac5d10442453 |
lib/bio-vcf/vcfheader.rb | 100644 | 0 | 0 | | | 1.78 KB | 5356663b1ab03dc0e24992f8ba6b09d33c9140ad43562a56b38415c53fd7e9c5 |
lib/bio-vcf/vcfline.rb | 100644 | 0 | 0 | | | 409 Bytes | bd3340b343773950647f370a4184972661e4a5e2358794d97d030e033e5cad6f |
lib/bio-vcf/vcfrdf.rb | 100644 | 0 | 0 | | | 3.34 KB | e193c21376598fe3c3ec403b6337550f5bbca9764dbf5b5bf20770b79e3ad75b |
lib/bio-vcf/vcfrecord.rb | 100644 | 0 | 0 | | | 6.13 KB | 053387017fa4a9021254002037fb63d2496afffa11da20f365dff36c04c80d6e |
lib/bio-vcf/vcfsample.rb | 100644 | 0 | 0 | | | 4.22 KB | 38165d779d054c12c97f868ee92ff39b3541873eb8478d8478264913132008d5 |
lib/bio-vcf/vcfstatistics.rb | 100644 | 0 | 0 | | | 576 Bytes | f137ef2e325bf98dd54a88f46992d1170bc32df53aa4a62c27510a1959831c64 |
template/gatk_vcf2rdf.erb | 100644 | 0 | 0 | | | 949 Bytes | b7440a2dd2a662d0c10cba548c15b0ba3bfbfe0fd30304ed71b6260db0a124cb |
template/vcf2json.erb | 100644 | 0 | 0 | | | 354 Bytes | cfd88e5552f306005e49a686785a1bcb9335b187f86edaa14a40b487dba58d59 |
template/vcf2rdf.erb | 100644 | 0 | 0 | | | 330 Bytes | 3bbbc26bddc85d22e6ab9640b68112cc58dddbcd7699bb2f2065444fcfdf77df |
template/vcf2rdf_header.erb | 100644 | 0 | 0 | | | 740 Bytes | 1097e8b0e10bcbcc826a8040961ee72b0ec29990d8bbdf76199e5745bfa96c12 |
test/data/input/dbsnp.vcf | 100644 | 0 | 0 | | | 57.9 KB | c18baf1fe6d07c74e668a65f643f51ab28d33e9c27ef1a0ecea5504fc583d253 |
test/data/input/multisample.vcf | 100644 | 0 | 0 | | | 24.9 KB | 356ceffe21668ef5a8f30bb4bf7a69ef8032c8e1628fd80d33411e1660a0898e |
test/data/input/somaticsniper.vcf | 100644 | 0 | 0 | | | 13.3 KB | fd8726fda7cc01c38ad32e0cbe0b3b5f70649208e8b101799aecb27bff6bf93a |
test/data/regression/eval_r.info.dp.ref | 100644 | 0 | 0 | | | 11.3 KB | f0ddc7873948fe13c8ff9796a408392eee4a064e9e4d3d6836227f8550f15e23 |
test/data/regression/ifilter_s.dp.ref | 100644 | 0 | 0 | | | 1.04 KB | 38d86ea18810e0d4a52301d048bb5e200302513e1a627add203d8cf5d58b96b5 |
test/data/regression/r.info.dp.ref | 100644 | 0 | 0 | | | 24.1 KB | c0200725e3f37f4c691949f893a06e56559df5314baec8b8b901013e616dabfc |
test/data/regression/rewrite.info.sample.ref | 100644 | 0 | 0 | | | 25.3 KB | a6725a2a963b866366ce598c637dfd8a486a2a3e8572684170b2953c8b9a55d9 |
test/data/regression/s.dp.ref | 100644 | 0 | 0 | | | 23.4 KB | 0ae234d11416d79506a1e673907ce8c366b0ccd8ed86726b17964405c645f82c |
test/data/regression/seval_s.dp.ref | 100644 | 0 | 0 | | | 1.15 KB | bd3f693badda7474b6c4f7a37e646b6a5b02e74ee628a17374f771f61c233294 |
test/data/regression/sfilter_seval_s.dp.ref | 100644 | 0 | 0 | | | 1.04 KB | e9dba3a4bbe1378132fd8ea44a302303ad38d14b277c45483d7901be126b654d |
test/data/regression/thread4.ref | 100644 | 0 | 0 | | | 24.9 KB | 356ceffe21668ef5a8f30bb4bf7a69ef8032c8e1628fd80d33411e1660a0898e |
test/data/regression/thread4_4.ref | 100644 | 0 | 0 | | | 24.9 KB | 356ceffe21668ef5a8f30bb4bf7a69ef8032c8e1628fd80d33411e1660a0898e |
test/data/regression/thread4_4_failed_filter-stderr.ref | 100644 | 0 | 0 | | | 165 Bytes | c111e03062fc297af6c0e8050a62d64cf0927f9826e3872f1f3c77db9b8a7141 |
test/performance/metrics.md | 100644 | 0 | 0 | | | 4.23 KB | 939fd9e24c438d63633ad54b06fc8753ebf56074b8c568113fdfc11dd5eb1033 |