biointerchange-0.1.3

https://rubygems.org

biointerchange

quick gemspec

.gem

.gem metadata (gemspec)

.gemspec

id: 409428

number: 0.1.3

platform: ruby

spec_sha256: 5f4dbe0c78374b616d6cd786231e0f0289b5068a56b7272663344d82a3f7094b

sha256: e5cef89d8aa7bc52a678a4d25efa9e223c889987b554b33a7f696239bfc57ffc

created_at: 2024-05-13 08:19:43 UTC

updated_at: 2024-06-08 07:00:31 UTC

position: 11

version_data_entries_count: 87

uploaded_at: 2013-01-05 22:45:23 UTC

indexed: true

has_extensions:

extensions:

Gem size: 1.27 MB

Version Data Entries

Total: 87

Unpacked size: 4.9 MB

Full NameModeUIDGIDMtimeLinknameSizeSHA
.document6440055 Bytes0050ed5b67fff8be1f7e1610fb2e9d4a3f5c826d65c82ede0828c633bacc925f
.rspec644008 Bytesd59fa712d58b2ac2197124fe6e24bf353111260fc3ed1c3304520c32ad00d128
.travis.yml64400268 Bytes017a2a30cd053bf466a1df38076cfb78612fa61099fc1fcda19459dde684a75f
Gemfile64400493 Bytes80ffffc456fa86daac318325083a8eeec4907ec5afb2502876bab4d85e99fa74
LICENSE.txt644001.05 KBc2c542beda519023eb02140bfd3bac28915b4373f9bcf6745a35617d57ec1d5a
README.md6440016.3 KB0fc80e9aad22beec249abb6fa912e6761475468b2756aeb514e52edb122e2c69
Rakefile644001.53 KB9a921a7962e876e10d7a1e39df1b43e6e072baf14bef1ab50dbd7069566eb887
VERSION644005 Bytesdbf0978ec2b587a5d6187fdcc41cce9ff2c0eb8eefadba0eb51f3840ab6eeb46
bin/biointerchange7550064 Bytes46c1b04ec08426221dfee5712c445624594005dd6ffa8b5598647311a15c1714
examples/BovineGenomeChrX.gff3.gz64400710 KBda06fc280555683e805ed71118fb14c18d507ceddcef8ae6309739083639fc1e
examples/chromosome_BF.gff64400146 KB9c35e764a7dd6930b87f4ec15f12db99f2268f3b8037c35cc477b5c996595f97
examples/estd176_Banerjee_et_al_2011.2012-11-29.NCBI36.gvf64400743 KB980b903c15fd2942bf19731570a0aa7144bddb8e38a28111f74e83c3c1da123a
examples/gb-2007-8-3-R40.xml6440095.5 KB9ea811b4cea81877e13a51b363ea03b28f1d1366e0519b5b8de053282e3f3055
examples/pubannotation.10096561.json644003.56 KB43b0fc4e83c295d8653e56695c32849024813956832de93ab4505fe99a212125
examples/pubannotation.10096561.json.old644006.16 KBa80a32744036f10505240718b1ee8552b61b3688c48ecd199be646a3e1b9663e
examples/pubannotation.2626671.json644007.86 KB14db98c64b37bc7b77e9e7197eaafb19ad7f393d5180096a47bee423063f2f23
examples/vocabulary.rb75500794 Bytesd1d6fe01396bd585e66e8a2f95b252d118c955b6d80e691644df27f57e9db620
generators/javaify.rb644006.69 KB4ed38cd81289aa5582a951f7dd9866b039213e2bd595ae2d92044f5ce8bf2f9d
generators/pythonify.rb644002.31 KB2960aea2cbbeff52fe95369fcc0cdbaf638c1851cb04086514b9a3f8445cdd77
generators/rdfxml.rb644006.96 KBd8260a6714fb8f83ec59764c208d91e7d1b640d5b3a97d4625826ec73d03f6d1
lib/biointerchange.rb6440032 Bytes844c116fedab16d9eb642dbe9c3943a9ef41c88f0cbf635d60e08774c193c73d
lib/biointerchange/core.rb644009 KBff675faf70e64a409be31c5460c9d7ed40806fa1496ef72636f0ad9013b02cff
lib/biointerchange/exceptions.rb644002.8 KBc9fee395450a425985d4cfb07be898bc103d2684d8b2101e7eb20637fc169dbb
lib/biointerchange/genomics/gff3_feature.rb644002.63 KBe3d66ab215166cf5569ba2dee234dc1b5fb916939d500642c1dba5d221ed2056
lib/biointerchange/genomics/gff3_feature_set.rb644002.28 KBb8758099b1804b9a6a8f0459bd40598596ac8c669e50fb096b85dddfef222487
lib/biointerchange/genomics/gff3_pragmas.rb64400881 Bytese9086ecdef7407456209538600c1e1155c421180d85edf4b50d612a9831973c1
lib/biointerchange/genomics/gff3_rdf_ntriples.rb644007.11 KB41a3df72d47e11ee6c51b9d7af8ed4a5325255575ca1112611f8f983559bc59b
lib/biointerchange/genomics/gff3_reader.rb644003.88 KB4d5932ba85b903772e4c2272bbef4236b74fe70865483efaadb933b9e646224e
lib/biointerchange/genomics/gvf_feature.rb644001.29 KBc659685c5d9390abceba7489cd6131d0afc88e7ce3e25805599aa89d7f671e7e
lib/biointerchange/genomics/gvf_feature_set.rb64400240 Bytes6acfd665f8b0ab8a73220a224bb43d294ae8ab7ac446579d4c77f6acc0d7b55e
lib/biointerchange/genomics/gvf_pragmas.rb6440046 Bytese27637fc61b2c7941dbac37a098bbafd76a033d9395f5487890781e2aab5e75a
lib/biointerchange/genomics/gvf_reader.rb64400941 Bytes1d389df4d423433e0ed8d8c61cb312813bca95d09deea31ea0da669fe1b7ded2
lib/biointerchange/gff3o.rb6440022.5 KBa240af545db8d0104de5d0f546ff4dcaf922f45aa3b4a98154741b6bff169587
lib/biointerchange/gvf1o.rb6440039 KB6bde43c9660082c5756807f9cd57c6878b4395c8ac87717a5762c52ed6ac06af
lib/biointerchange/reader.rb75500972 Bytes44eca31bb9020738d330d30d7ee6341e65bd61ffa7b369baf22638efd40e12b8
lib/biointerchange/registry.rb64400354 Bytes9f56efbb7820668a76a256bb1f78f01c209cc243d08e1afdecfe6c06f3573cd1
lib/biointerchange/sio.rb64400617 KBf4073608b2181b0c1e29ae2afd2c93fe629b1037aa80174d14d6d9d84684f97f
lib/biointerchange/sofa.rb64400131 KB0d62d7c6361eb6f36edb32f6682bb15ae301a1c5f9573b03969e328fcacfd9f7
lib/biointerchange/textmining/content.rb644001.99 KB55130078e9f9deb2c30772d205ae51c8d306e03deca2c9b9cd8cbebba98c005d
lib/biointerchange/textmining/content_connection.rb644002.79 KB779c4af55658a3f617ca7d00a6a2ec2e57080bfe3016b4edaac828c5d3d96435
lib/biointerchange/textmining/document.rb64400919 Bytes00f0f0b3a481fc062c0614cbf318e9231c6366ddb36285233a4beb5ac7e8889a
lib/biointerchange/textmining/pdfx_xml_reader.rb755005.34 KB7c026b13028f6e52e72de0724af8025c8a0e110c41dab0556250f67a75971d41
lib/biointerchange/textmining/process.rb644001.55 KB4c42d9d99c0873c7bf9a48d8ed4198c60adccf5d344bfc2519258696419514e6
lib/biointerchange/textmining/pubannos_json_reader.rb755004 KB8a62ef920afd9e96f95671e403b5b376213839bac09a763bee57e850e3544184
lib/biointerchange/textmining/text_mining_rdf_ntriples.rb6440011.4 KBb8012d222f9dfd42f4545c9e6fa2711dbafc4025c85d6278a0df0ea419e5aa93
lib/biointerchange/textmining/text_mining_reader.rb755001.78 KBa67937b1d40093f8de3be3fa6ab6a822310fab3a9b5c3520e624b4ba7ab787f7
lib/biointerchange/writer.rb64400735 Bytes53c5034bc51807b8df89b1383f6df940b1498042daba680e38111804c4401ac7
spec/exceptions_spec.rb644001.25 KBd573abab9981cf6c606bfd4d872f571d3f132172021be8322c6d244067dccf70
spec/gff3_rdfwriter_spec.rb644002.63 KB9c68cfb1e297b4e298a9ab6acaf25dea30f97290ea1a367a6ec9172e791ec5be
spec/gvf_rdfwriter_spec.rb644002.76 KBb00d4ac031b3dd6c4429fe4f3aa8b027802dd79d9c82913654d390c3b0b3a1bc
spec/text_mining_pdfx_xml_reader_spec.rb644003.94 KBfc0c19debe45c85d2e89ee77e8714f8a15115c1aa00e2c119a57e61655659708
spec/text_mining_pubannos_json_reader_spec.rb644007.35 KB60f81d77572df348cd415ede6d0aa3afed43266753fda232bd9235b725652c1a
spec/text_mining_rdfwriter_spec.rb644002.63 KB18d4c330dc69f9fa284a0d69bb5ba02776cfa50fab068ae1ff2c1e18dd7cee60
supplemental/java/biointerchange/pom.xml644001.35 KB174a4c865bef86d89ee9acf1260c33f416e8668aabc0d7c14d0394c307af2629
supplemental/java/biointerchange/src/main/java/org/biointerchange/App.java644002.48 KBe4bfc00267852f89912080e438c2e87058b777afd0cdf9afc3516c141b3852d7
supplemental/java/biointerchange/src/main/java/org/biointerchange/AppSIO.java644002.04 KB8a26051940810ffefeb0164f7a790277f8508a5508362acff63f56811097606a
supplemental/java/biointerchange/src/main/java/org/biointerchange/vocabulary/GFF3O.java6440026.5 KB0bb6546f0a3539ef6c0b582f95c59af1b9039d2fdfc736cb220e47e41bb0d1d4
supplemental/java/biointerchange/src/main/java/org/biointerchange/vocabulary/GVF1O.java6440038.2 KBa990d2a3327d9d7f4105aa13798dbccd87c03a52e739b3e326880d6ad2ae17c1
supplemental/java/biointerchange/src/main/java/org/biointerchange/vocabulary/SIO.java64400689 KB95e78d303f2f5833950aed430fa8e83021329450f9a79e27f731795330343497
supplemental/java/biointerchange/src/main/java/org/biointerchange/vocabulary/SOFA.java64400117 KB6fb6cb1932e0dba5b8f3472bcca7926e66fb567cc9397bcd4230a9470c9efda2
supplemental/java/biointerchange/src/test/java/org/biointerchange/AppTest.java64400646 Bytes52d8c8013d96e26a9ba726648fa1dd35b4a0fcaa38b804c3545cc18d36f3e434
supplemental/python/biointerchange/__init__.py7550063 Bytesff6b5c02287d994df22b794bafc57f3f24c9fade0ab3b563dde232a608df6444
supplemental/python/biointerchange/gff3o.py6440020.9 KBd250f0b86e31950e93547db9787d241cacb054161c6e95d9f00e31419532fc26
supplemental/python/biointerchange/gvf1o.py6440030.5 KB8dbdcdfc6e95e14b4f6e87336748f5de5bc05c9a89768033e9b4dacb2e419c46
supplemental/python/biointerchange/sio.py64400676 KBc25e0ee54b4fe0278bd52811d339fd956a30336c0d035d8f14a51b8243dcbc77
supplemental/python/biointerchange/sofa.py64400145 KB3e57f2d4def0b9cc0475a048fdfd4c7e7e72875d1447184734042866a00d76b0
supplemental/python/example.py64400764 Bytesc40429da8fb22596aebeece9c1cf42ef3cdab128760b49b29df62530a3285437
supplemental/python/setup.py64400390 Bytes1efbcdf26cc44c829d6b53c0d3364b16b92147f145fe762d1f7d5d74c94a880c
web/about.html644003.98 KB34c479be18ff5149377ec6bd70b6ae713cf4d644113c371da719b76e0e9974df
web/api.html644009.19 KBf66436e83e83d03fd09a3a03789954b9f9ae3185d087153742c60aab800e3138
web/biointerchange.js644006.91 KB27cbe1e1dd42a3a1bd6deae1a505bdc2aefaafc7b058386d6cc9d2e9cf47fd17
web/bootstrap/css/bootstrap-responsive.css6440020 KBa7b596eb228b52453246731b5d165726102393bf06491ce64aa61a6595502dbc
web/bootstrap/css/bootstrap-responsive.min.css6440015.2 KB5303ceeca6b773133a9d2f2de832dfbf5b7cfff8c630dba77e2c11598d4e505c
web/bootstrap/css/bootstrap.css64400112 KB0fc3cbe5104f21cc491a43aa8369bd08337bee45ff980c904514757999cdb766
web/bootstrap/css/bootstrap.min.css6440093.3 KBd14e6e7df2ccb8a3c19aef90a14c63a7f38df5b9025e9940ac7e229194073376
web/bootstrap/img/glyphicons-halflings-white.png644008.57 KBf0e0d95a9c8abcdfabf46348e2d4285829bb0491f5f6af0e05af52bffb6324c4
web/bootstrap/img/glyphicons-halflings.png6440012.5 KBd99e3fa32c641032f08149914b28c2dc6acf2ec62f70987f2259eabbfa7fc0de
web/bootstrap/js/bootstrap.js6440054.9 KB192b8b38dda340e751ab5b5272a5f783b45ff76c698642bec552f0e2ddd70fce
web/bootstrap/js/bootstrap.min.js6440024.9 KBa0516a55fb8fefa0d412ff86bb1a9dac2803fb4198881f71eb087d2a8277a40c
web/bootstrap/js/jquery-1.8.1.min.js6440090.6 KBa1305347219d673cc973172494248e557ce8eccaf65af995c07c9d7daed4475d
web/css/rdoc-style.css64400116 KBa9ef9e2a649673fd045819b8e565bc1902d138ea30252d91d8f3b12d69387aa0
web/css/rdoc.css6440012.3 KB8421b147730dd5aa07b0f2f25e11090ae552996025210d0a5e7130cb2ab7d6fe
web/images/BioInterchange300.png6440026.7 KB3de6f10a0b0769aca3496915c5c53048de91ba1625b9021fe632e22a5888c2d7
web/index.html644004.89 KBd42abef4b3dc09ef72e1e442a051b529e7234831b0c0a22791346ff42f7d61da
web/ontologies.html644004.95 KB952686aaeb909b9708f2313c645376ba1875d842db10417e1772ec30a2734f97
web/service/rdfizer.fcgi755002.99 KB304ce223bf0ee704297799e439992d0bf5e8574e67cc197a0a51400932edcb6d
web/webservices.html644005.69 KB1e71cdbb8ae12563e3823fbbb26a528bf312ec3c9a5c1ddfd3ab81b5d0fb1e92