Sha256: c659685c5d9390abceba7489cd6131d0afc88e7ce3e25805599aa89d7f671e7e
Contents?: true
Size: 1.29 KB
Versions: 12
Compression:
Stored size: 1.29 KB
Contents
module BioInterchange::Genomics
# Represents a single genomic feature of a GVF file.
class GVFFeature < GFF3Feature
# Creates a new feature representation. A feature is described on one line of the GVF file.
#
# +sequence_id+:: an identifier that determines the coordinate system for the feature
# +source+:: a text description of the origin of this feature description
# +type+:: either a SOFA accession, SOFA term, or textual description (the former are URIs, the latter is a string)
# +start_coordinate+:: an integer denoting the start coordinate of the feature
# +end_coordinate+:: an integer denoting the end coordinate of the feature, which is equal or larger than the start coordinate
# +score+:: a floating point score
# +strand+:: a constant determining whether the feature is NOT_STRANDED, the strand is UNKNOWN, or the feature is on the POSITIVE or NEGATIVE strand
# +attributes+:: a map of additional attributes associated with the feature
def initialize(sequence_id, source, type, start_coordinate, end_coordinate, score = nil, strand = NOT_STRANDED, attributes = {})
# Fill in phase, which is always omitted in GVF features (after 'strand', before 'attributes'):
super(sequence_id, source, type, start_coordinate, end_coordinate, score, strand, nil, attributes)
end
end
end
Version data entries
12 entries across 12 versions & 1 rubygems