bio-faster-0.4.5

https://rubygems.org

id: 303526

number: 0.4.5

platform: ruby

spec_sha256: 95130c6d9753a25380853cbb9a62d70a7d1d49e22924779baedf92b10dcae942

sha256: a3fa411c33e019428c79faa5cf97f1c5ca5eb2797174cad985944f8d8fdeb97a

created_at: 2024-05-13 08:18:07 UTC

updated_at: 2024-06-07 14:08:00 UTC

position: 0

version_data_entries_count: 60

uploaded_at: 2012-06-13 10:53:06 UTC

indexed: true

has_extensions:

extensions:

Gem size: 19.5 KB

Version Data Entries

Total: 60

Unpacked size: 70.9 KB

Full Name	Mode	Size	SHA
.document	644	55 Bytes	0050ed5b67fff8be1f7e1610fb2e9d4a3f5c826d65c82ede0828c633bacc925f
.travis.yml	644	261 Bytes	2acb000345be850b38915b7c9f290b84a2df84175b9dbaebcf2f91c61498cda0
Gemfile	644	422 Bytes	8506f9f8cf8c26570d89762467ecc945b08bb728e03fc34356fc0333e230864f
Gemfile.lock	644	614 Bytes	29d9c992965ce83c0cb78f2b31703339dec476e4196e7bd8eadf28cbdf608c7c
LICENSE.txt	644	1.04 KB	6764eb4c31ff187b9adc4672c5490c18177e08259af6a1f2e67d01a9fd5dabd7
README.md	644	1.16 KB	64150798b6a1a97660bd76b7227cc6d39cd627a1ba79b76ef6336a7a3ee88608
Rakefile	644	1.69 KB	e99854a3b1b3ceafe5776f021b743dbac335dd11e23b0da65c8115d59ba91645
VERSION	644	5 Bytes	a2ef0de21caa3d5b8a0bb993ac5b02aff3f9183531154d6082ff04a219f7987d
bio-faster.gemspec	644	4.63 KB	c2cc1a4e82b9c2342409e4119f0eb1b6541d8591f66c269392dc862f6959979b
ext/faster.c	644	3.22 KB	84c7f79e66d5ac0ed7e95f517ca446e907b890a97afcf6c6d92abe028f303105
ext/mkrf_conf.rb	644	875 Bytes	05d48cf3c8e4050ccb13a1add30a87e35efc3d5d3f3d8bf2cd8bd6113161723e
lib/bio-faster.rb	644	68 Bytes	36b4f846f996c3743d9004db0905edfd9e32dcf920a453048b31a32299c2414f
lib/bio/faster.rb	644	2.12 KB	b78b752288fe4cabebd7aa6920a81282a2c95907123a18ff1fd73cf4f465a2cf
lib/bio/faster/library.rb	644	768 Bytes	f12f6b11c891b6a590066e0140c390a0865180ed64505a5cb9d892b4255222fa
spec/fastq_error_spec.rb	644	2.97 KB	341399cd6129cabca849451b6c55df504a8a9757bb5a9aa7f9184be7f8136443
spec/helper.rb	644	467 Bytes	334f173638d177efa319c115e28f8fdf471a7cd8b0cc4db64dd9ccd9062653cf
spec/parser_spec.rb	644	2.61 KB	d5c7947c19a0d7fc6d988c23f6c017f0de53cf44440baeaa933d3388240943fa
test/data/errors/error_header.fastq	644	607 Bytes	8525e6fb7130c6bd224d1545a7fa7fb01e0323926c4858d85dbe8742d21488a4
test/data/errors/error_long_qual.fastq	644	609 Bytes	4649efbe152fcc28e1c39b2721ce52f147252a7ee0b55ceb22d535dae1277d48
test/data/errors/error_qual_del.fastq	644	608 Bytes	843acd2731c024662a481a9ff87349f4372cb407850fdd1e1b6d1c1dcc72de54
test/data/errors/error_qual_escape.fastq	644	608 Bytes	12659079d3d9f9348990d3c540988d3dd21dd80a5abebbe9527b5a24eb2a3e2c
test/data/errors/error_qual_null.fastq	644	610 Bytes	72af9fe18e7f35688f717b685771f6da3fb1534d54f3af0437be97ecf4c617eb
test/data/errors/error_qual_space.fastq	644	607 Bytes	6f251bdad697b484520c2092c03e6b58b2d34d2c63cc084bae3dcfa55cadeb7a
test/data/errors/error_qual_tab.fastq	644	612 Bytes	eecd1bb24e4368b9ca7fba375743e5764fbd3dee3783bb5f65fb0801f732f941
test/data/errors/error_qual_unit_sep.fastq	644	608 Bytes	a819e7f2a4d33695eb1916112d4ca95ab16bd58f7fcf1ef4798d854b59ceeae3
test/data/errors/error_qual_vtab.fastq	644	608 Bytes	24629e256f3ad949817c8e0c1f5e117c1d62fc64b96d74fa0b9ffb9a52b56274
test/data/errors/error_spaces.fastq	644	628 Bytes	478e3f6c09d4f4ac82b68b3607c7d5860fb0c3192b7f04772694067301e6e767
test/data/errors/error_tabs.fastq	644	629 Bytes	bcf82ae47fca310a4ab418438f6158d47e9e93d5a4b8d0258230c58f15674301
test/data/errors/error_trunc_at_qual.fastq	644	582 Bytes	894945d96905c98e3e70d10b25e7ed702f151da44d4f4d56e7a479f30e844bd0
test/data/errors/error_trunc_at_seq.fastq	644	522 Bytes	445e7f307bb609c84a138a8b2e036aad4c9a8343029af9ac8ba3864aff7fe680
test/data/errors/error_trunc_in_qual.fastq	644	607 Bytes	07e2bb6d586f5130181db31822e5c311413d99bdfca61aac376983b85144c953
test/data/errors/error_trunc_in_seq.fastq	644	535 Bytes	6e7bf90bde5e7b011d52b7b4c956734818b9a52fa04a34e978d3b405293b7fa0
test/data/formats/illumina_full_range_as_illumina.fastq	644	426 Bytes	dc2cbaea780de049b285d2b13c0f9a7cb270f7e493a2233b9846060b56ca3e77
test/data/formats/illumina_full_range_as_sanger.fastq	644	426 Bytes	4148a8f6ae111de3d10933e1055dadb932e6f93926f75cf3983d36646fe37e90
test/data/formats/illumina_full_range_as_solexa.fastq	644	426 Bytes	8c7499a7f6dc5a0c6a2a8af7c5051e6c47dbc10bf106e721db50e40634925a5d
test/data/formats/illumina_full_range_original_illumina.fastq	644	426 Bytes	dc2cbaea780de049b285d2b13c0f9a7cb270f7e493a2233b9846060b56ca3e77
test/data/formats/issue_2.fastq	644	116 Bytes	c7f4f434ca82df9bb3ffeae7a68ab442f16d1018936b90e0660deecabe43119a
test/data/formats/longreads_as_illumina.fastq	644	8.19 KB	3be788dd8a50564cb7b2bdddd3005c41dc85ec866242f8979d1223b97f370447
test/data/formats/longreads_as_sanger.fastq	644	8.19 KB	9b1f6ac49d2a2bfc60170ac1edf5a772a3bfa1dd9d731d4f36524f6c7f9321f6
test/data/formats/longreads_as_solexa.fastq	644	8.19 KB	a922d878e416ecc7df755f0e263dfe31078bebf298f1c85e6a5c980a6cc38bf5
test/data/formats/misc_dna_as_illumina.fastq	644	767 Bytes	8c059e0f208320e2443ff5ae1f5c6c2be741a38f48caaf967c269ae264b35a28
test/data/formats/misc_dna_as_sanger.fastq	644	767 Bytes	56d7fb3045c6f0ef3e2a4e35c4e4ccca79674c4a561e4e5f70a164e0d2393f51
test/data/formats/misc_dna_as_solexa.fastq	644	767 Bytes	5323e24d25cf1ca763dd002553a80424c4e4e2011bd677eb60ba05ea3d7c410d
test/data/formats/misc_dna_original_sanger.fastq	644	767 Bytes	56d7fb3045c6f0ef3e2a4e35c4e4ccca79674c4a561e4e5f70a164e0d2393f51
test/data/formats/misc_rna_as_illumina.fastq	644	774 Bytes	8c421caeb94ff3a46da42307e67f8ad21ef02763793f2a695872651e2b203635
test/data/formats/misc_rna_as_sanger.fastq	644	774 Bytes	b50686397fc812ecf7c726901acc1f127be1d29dcb6039bf35970e378ba51893
test/data/formats/misc_rna_as_solexa.fastq	644	774 Bytes	073dd9509de2be068bae20cae68c546727c8043de53298a3093afbffa9dda3f2
test/data/formats/misc_rna_original_sanger.fastq	644	774 Bytes	b50686397fc812ecf7c726901acc1f127be1d29dcb6039bf35970e378ba51893
test/data/formats/sanger_full_range_as_illumina.fastq	644	550 Bytes	dfd416a2f4bfe648e968c915f322e98123eaf13cc7c3bd4344323471cf01ddde
test/data/formats/sanger_full_range_as_sanger.fastq	644	550 Bytes	daa8500ee0d0b8242c65991f4965b1ec445cf9f57565b838d3ba760e5313cb00
test/data/formats/sanger_full_range_as_solexa.fastq	644	550 Bytes	a7ce416a53df877a08592025830be338b345330c61064ce2499532f6a2497d40
test/data/formats/sanger_full_range_original_sanger.fastq	644	550 Bytes	daa8500ee0d0b8242c65991f4965b1ec445cf9f57565b838d3ba760e5313cb00
test/data/formats/solexa_full_range_as_illumina.fastq	644	450 Bytes	cea9449b8602d7a29b6eaa45a0ecb2edd3e25cb3273f1476e05ffd3766da7cbb
test/data/formats/solexa_full_range_as_sanger.fastq	644	450 Bytes	10b0c1a68a40b726229f23f0989637e6479513965bb9c450ac81eee1ce796808
test/data/formats/solexa_full_range_as_solexa.fastq	644	450 Bytes	e6c95762306bf1cbfd7bb952215fc20751caf2448c083f6fdf4414dc8f96e8c1
test/data/formats/solexa_full_range_original_solexa.fastq	644	450 Bytes	e6c95762306bf1cbfd7bb952215fc20751caf2448c083f6fdf4414dc8f96e8c1
test/data/formats/wrapping_as_illumina.fastq	644	963 Bytes	cceaae4b9273ceabe155ab40724f96d56c725b920fa94ddeb0a0c21f9fc8e0ae
test/data/formats/wrapping_as_sanger.fastq	644	963 Bytes	f8272a035e8908a7939f525de403563f726b577e37bae419aae8de55bc4502c0
test/data/formats/wrapping_as_solexa.fastq	644	963 Bytes	73211e22ce6ce16d579f3ee1a2dc0eec913e20799185655305bbbd7670364811
test/test_stdin.rb	644	159 Bytes	16aed99db9d5fc8adf3a28b268fba0934685f9948221553ad52682d5568fd682