bio-samtools-0.3.1

https://rubygems.org

bio-samtools

quick gemspec

.gem

.gem metadata (gemspec)

.gemspec

id: 232486

number: 0.3.1

platform: ruby

spec_sha256: 14ac5225587f7ccdd2e8baf7aa96816a51ca9725527b1a829478154c8f4e22cc

sha256: dd6aff4fb0b373ec39601cc024014d3a48684b6d315c1839669131ab678ac0ec

created_at: 2024-05-13 08:17:01 UTC

updated_at: 2024-06-07 00:56:28 UTC

position: 25

version_data_entries_count: 110

uploaded_at: 2011-10-27 07:10:34 UTC

indexed: true

has_extensions:

extensions:

Gem size: 231 KB

Version Data Entries

Total: 110

Unpacked size: 554 KB

Full NameModeUIDGIDMtimeLinknameSizeSHA
.document6440055 Bytes0050ed5b67fff8be1f7e1610fb2e9d4a3f5c826d65c82ede0828c633bacc925f
Gemfile64400418 Bytesc5ae9da03b15c51a305cd30f3e8a83b2ba84d1840ac71680027807ee28e95ae1
Gemfile.lock64400377 Bytesbe6d00c79e48c992206de8e7b0c0334db6b01cf260876529d1ae8189a7747b4c
LICENSE.txt6440035.4 KBe17183cbf93363a8c006f38b37f57b98bd334c304ed222122145cda6d89dbf82
README.rdoc644003.1 KBdc757dc8390616dc776be91ed77fde3e4c6e1e05a4d951fc6cc641c25e2587e6
Rakefile644001.98 KB3adc0a8f0fe4250e485b2c5b5b8a98bc42a1352675213ee518f8f88064dce025
VERSION644005 Bytesf4fc956ec61b187cd18790c0b0a6fa5d1d3a30de4a5493e3277460485ed188f2
bio-samtools.gemspec644006.47 KB5d226552909d330d65b657b8ee52d6d6ed5ce15ec5d3204f440c4a99bbfc6ca9
doc/basic_styles.css644001.02 KB38c30a3b3c2aedf648714ab80c6933cf8b719e125dffc7d74886bee279428a65
doc/classes/Bio.html644002.98 KB7110884215d125a0372dd2ad6c93d699e03c9f4cb7958b89b598a564e5ed6a9a
doc/classes/Bio/DB.html644003.24 KBcd99d11be9a34c6c34019595c8d679d8f8990be107344f4b366f3edac3b101d6
doc/classes/Bio/DB/Alignment.html6440014.1 KBc7630a46823bb1ba490f363b43d01828f264b091ede99877e1e6a355254fbb6f
doc/classes/Bio/DB/Alignment.src/M000012.html644001.05 KBa23e8dd645ce9f9065252511f7e7960b1cd53ff00d2d3552b707c698b339806b
doc/classes/Bio/DB/Alignment.src/M000013.html644001.92 KB4cf3fbd482807bc12b6f39053555e02a8e355de12bb824cac57ef18e3b737b54
doc/classes/Bio/DB/Alignment.src/M000014.html644006.62 KBa2f857cd93f3d7f00663300e040ffe300c20dbf464ba547bcd45dda17eba5a02
doc/classes/Bio/DB/Alignment.src/M000015.html644004.12 KB7a058efe1e07caf7d2145de3143d233fc334b6f48b6bb3d8cd4a3610acd8231e
doc/classes/Bio/DB/SAM.html6440016.5 KB0bd2296efe63349736f874a907e97dc842a00bf95ac8a0919da08a91be213342
doc/classes/Bio/DB/SAM/Library.html644002.97 KB31f6971878943fe072a706f213f5ffb8371742d5ac0c22f19a7fbc1387177f7b
doc/classes/Bio/DB/SAM/Library.src/M000006.html644001.84 KB45dfb7be73bbffd0f9cefeb1020aaec15a54fa172b3d32bc72a9c303e777c34e
doc/classes/Bio/DB/SAM/Tools.html644008.46 KBb9960e36876834d96dd2d4db4262c384e626e6631a1c84ec866bc3c868d97f45
doc/classes/Bio/DB/SAM/Tools.src/M000007.html644001.28 KBc6dc068cd7bb773b3d17d172eed3d0ec17f5dabcccf7743bc9394e91fa072c00
doc/classes/Bio/DB/SAM/Tools/Bam1CoreT.html644002.31 KB5f35cd3e00e41182717fcfc24ff732cb8b6ebbf7e2e8e23506b9879f9bd8c236
doc/classes/Bio/DB/SAM/Tools/Bam1T.html644003.42 KB72d89fa26f81b7ca5a542c08dfbfd88f52038ce94e79add8bfa83a6652259b1d
doc/classes/Bio/DB/SAM/Tools/Bam1T.src/M000010.html644001.02 KB993d0ca1b6d88805e4cd04e0e11224a517fe75f41102b287e6b65340a94bfb51
doc/classes/Bio/DB/SAM/Tools/BamHeaderT.html644003.82 KBa5d415e0d9bf838479531c38e68ee41df14efa27e83d2503d785fc5d146f736b
doc/classes/Bio/DB/SAM/Tools/BamHeaderT.src/M000008.html644001.13 KB50bb5000fed8801e492d5df1a876463a6c5bdeb63ea6b643d9a92c56a9b58b2d
doc/classes/Bio/DB/SAM/Tools/BamHeaderT.src/M000009.html64400845 Bytes095bde7cf6cb9e2b69a08f69ac4f3bf3f63690f49dcfca0ee8c0114af317194a
doc/classes/Bio/DB/SAM/Tools/BamPileup1T.html644002.32 KBf0fe301a5dc5384ca244df1c528f116c5d2521f57f79e83fd56aa2412479d331
doc/classes/Bio/DB/SAM/Tools/SamfileT.html644002.57 KB450d6caf98769d99e37ce788612aae40424e9c97b4ff54905811df9077e66c0e
doc/classes/Bio/DB/SAM/Tools/SamfileTX.html644002.31 KB6e080755aa7aed324e7fd0906b76c5d33c23897bc6e7cd7f33d4a7e29aa597b4
doc/classes/Bio/DB/SAMException.html644003.09 KB950dbb42ee190d44c6ebe9d04396060c66e00402d097380d1a519fbc20b65950
doc/classes/Bio/DB/SAMException.src/M000016.html64400694 Bytesbbfd6e8140686ed0fa7579a57ad0139aecf9c3d25b9381b54a30453a9d6954a6
doc/classes/Bio/DB/Sam.src/M000017.html644004.91 KB8c7626bb252c5dbf6fe8ac86ca09fa0eca8232efc7e6c56551d1b3852bf641a4
doc/classes/Bio/DB/Sam.src/M000018.html644004.78 KB5580e39052fa208ef34ec0b57bcae19a756bae9e72db574c4bc88f5ba5b5a507
doc/classes/Bio/DB/Sam.src/M000019.html644001.22 KB15528115fb4d391906bfa4748a31a2bcef6408b2adb72ea0d30f57dac40045df
doc/classes/Bio/DB/Sam.src/M000020.html644002.54 KBc36c903465c4a70195c372617f0893922880000c7da443ce6c4e717cf0e15549
doc/classes/Bio/DB/Sam.src/M000021.html64400991 Bytes4e36cce4801a65622e72f29790cf1a579d3880b0639fb06e93bdc2a4b3264e37
doc/classes/Bio/DB/Sam.src/M000022.html644003.12 KB12907a1787d268d761c4726e922d27d935d6d9ac6a130e9529994261457ecf3e
doc/classes/Bio/DB/Sam.src/M000023.html644003.16 KB52a7e7d0a631ef1ae3c39df46ac34dcbb1f04c8e4ac1d19153feb699fe483054
doc/classes/Bio/DB/Sam.src/M000024.html644002.08 KB2978a88238fbe885f4a81718e9831d2ac2323007639967d39122d283bd479105
doc/classes/Bio/DB/Sam.src/M000025.html644004.66 KB676681e7e5ec74e9c61e800a380eeefcdd4d7b38d4a51ed20495d0b613b3156e
doc/classes/Bio/DB/Sam.src/M000026.html644002.58 KBe9606e2d3c49d3d81b6870075c756862bcb697976a64876e1d1311ae53f864ff
doc/classes/Bio/DB/Sam.src/M000027.html644001.37 KBb940e5cce7ee9069a6104ae8b15e40dd70d391442610717fd7d74605202989d9
doc/classes/Bio/DB/Sam.src/M000028.html644001.79 KB683e4d0641e02ad3a2b0c6f370b033a9071a0a76c65c3df185eff2203d607470
doc/classes/Bio/DB/Sam.src/M000029.html644005.51 KB16690224285eeee58c2699b9ed743b0c77f933baa23486187e751d4acf61843f
doc/classes/Bio/DB/Sam.src/M000030.html644003.82 KB60ac24fb41cf868eb5b2fc6bd9c6887d0db7b912d17e48b52e5d1425b19c574e
doc/classes/Bio/DB/Sam.src/M000031.html6440012.1 KBf87d67e0378ae8e525e3ab17bbd6dddd585e98642bb07e3cac0cfbe65229ae05
doc/classes/Bio/DB/Sam.src/M000032.html644003.15 KB3df6a137652d4c9d3c92be613ce43c652d80a7c56711819e3ec3c817b7145b03
doc/classes/Bio/DB/Tag.html644003.78 KB1ad1789edcd173fb735df89cc86e9436eae1bfc494ebad5d06075a913dfe8deb
doc/classes/Bio/DB/Tag.src/M000011.html644001.24 KB3708acba5dca26ba9420e9a168de715322426f5b801ecc3e073e2c523e90bc6e
doc/classes/LibC.html644002.08 KB5346821af8632aee23269ea7954b5ec268e8151bdc74228bde7dc1855f278955
doc/classes/Pileup.html6440011.4 KB0056cc926f682fc6ad0bfd1daf348467bc18d6f96018762aae78944d25b59cfd
doc/classes/Pileup.src/M000001.html644003.58 KB2bd877413407b3465bb39d21428186ebf38bdf713dc159cbad1ad9d919764714
doc/classes/Pileup.src/M000002.html644001.99 KBa71197786bd5b73c2bae7c38288db231385ab5a36deb3a6794414a78cc0bea5f
doc/classes/Pileup.src/M000003.html644001.12 KBe33d1a215ee71d1240a11a2ba152da7507961bddebdc30241b0fc4eeaa84ae4b
doc/classes/Pileup.src/M000004.html644001.1 KBa3c48fb24a0386104be76fb392e1867012f90eeebb171c66bb5918858d86b21b
doc/classes/Pileup.src/M000005.html644003.42 KB0a7f6587f33e2bef62502f34006167730ecadf5a04402833876238a09d514eef
doc/created.rid6440032 Bytes25e96fcaf494c6ae42c78fd6f28164a874a9c604edb3639d3d8fbd2b452b2a8a
doc/files/lib/bio-samtools_rb.html644002.14 KB64965482a25061394464a94037ec095173d4a781b926a2d4a405db9a0616c1df
doc/files/lib/bio/db/sam/bam_rb.html644002.14 KBb79bf6d0734679e11bb9770f22237acfeff46948e15c1d560846e64db88f05f2
doc/files/lib/bio/db/sam/faidx_rb.html644002.1 KB504afec2a0610cf49fd97963ccf1c09480349c3f5952bfd3ed117d0063a5d01d
doc/files/lib/bio/db/sam/library_rb.html644001.97 KB0be5898ab1984e87bef0a60515ee92345cb1edf599c6db48181f3c1744e7caf9
doc/files/lib/bio/db/sam/pileup_rb.html644004.4 KBd2b4012e0db191b01011f2d1ed4c1a8b1d1504d1cdfb9d0cd3907934c1e57bee
doc/files/lib/bio/db/sam/sam_rb.html644002.16 KBb350de2d96c34ff4a9b36fdc77b717ee7c036480165ca239ce0b3cb098e3c856
doc/files/lib/bio/db/sam_rb.html644002.21 KB5f5a63719437a1e1cb83e0f12786948e578da0a50f199858afd97926f9d5dd43
doc/fr_class_index.html644001.81 KB3e123f1af501be86f9b627013b307c5293b9cc7fef0ba8e3244b76137ac0368e
doc/fr_file_index.html644001.13 KB97519527e2ec6128efcc1d4a0cc6feb95120f36013c8f6643e8008b0900c1292
doc/fr_method_index.html644003.23 KB955ac1bd9f6cf89a8063988102e0620202ac8e9ae953016cbfaa414605f4fcfc
doc/index.html64400733 Bytesb780871be4ba06019390cb93ac2b5d132cfe7fcac0d10c7f90b05e007b55ec58
doc/rdoc-style.css644004.21 KBbb3bdf5f8cff983b0ed2bf957c012e55050fcf7cc0a5ee831e6a55352cd094f7
doc/tutorial.html6440010.7 KBadfe1aac1773adcd5f0b84dc5037ff12cf5a298239f9f0950f4913061d9194f5
doc/tutorial.pdf6440057.1 KB59d8955e9421b788d63764b41ac5e9a53f6549d31a3a01879705eea5191270ee
ext/mkrf_conf.rb644001.63 KB0bdd2c6cccec0869db94657d82e4ec952216f17ffa67ebc7f345ee88616b0322
lib/bio-samtools.rb6440034 Bytes016c125e835641d3f840b9a54cfbaa75b03d053aa86f7c4d7e960783e068e222
lib/bio/.DS_Store644006 KBfe348732d711eca342278747a998ad1c6e1e2b8655807819d2bb5b3d18e691ba
lib/bio/db/sam.rb6440018.7 KBa3b4f1136d1271854aca2b128175d03ecda99d00e858622d4c92605df7cc250c
lib/bio/db/sam/bam.rb644008.95 KB66e3ad67f7313bdac057a5c1a4346d9ac5cfa158c055319bc8c32baf6feeec3d
lib/bio/db/sam/external/COPYING644001.06 KB64f15672e35aa875518e6408e2ff858d64bbb83d0a32a2c66f3aef797e6eed4e
lib/bio/db/sam/external/VERSION644006 Bytes7845cf90979e33caf7d6685d76f320c03a236a48db2dc791d9a1fc425d19b68d
lib/bio/db/sam/faidx.rb64400722 Bytes2c6170dbf3a7fff116b4f6cc8f328f30daa24ba5bc91f7cf48bb17f786f8ce08
lib/bio/db/sam/library.rb64400861 Bytes3b2931569d95d3d995bb197468979f775b323a73d10430fcb1aed7bad7a29437
lib/bio/db/sam/pileup.rb644004.55 KB6a335feee023ac4686d6980737ba8176d4ef942dd657817267d540cf6faa7b1d
lib/bio/db/sam/sam.rb644002.18 KB816def74cec6dbff7c161f00018753a7742493d1a29e061fdf6541374b7e4a1b
test/basictest.rb644008.39 KB13a149654cd53b06eeeb6a949f9937ca2d123fe50f435b79a1f44ee45ef681a9
test/coverage.rb64400713 Bytes43329f6c42c0409228e1d12d37dedc591c2c8f3345a4cb714e899aa7cbf18f99
test/coverage_plot.rb64400617 Bytes331c8281749998b0c38607142751d93ed8beec6430a03b9a74852bff1a09887c
test/feature.rb644000 Bytese3b0c44298fc1c149afbf4c8996fb92427ae41e4649b934ca495991b7852b855
test/helper.rb64400433 Bytesabeddc2d79034453e5797014fe0e811055ccb18f4824f72c182f66bf157c2a44
test/pileup.rb644002.34 KBeacb8f9eee16d562981fb62315a33835246ae90fe93835b6007c269035bb8e35
test/samples/small/ids2.txt644005 Bytes640326a3b1430603ad3fd9aee93ff21d2f95b1c3fad082acbb833aad8bc9d8a5
test/samples/small/sorted.bam64400177 Bytesf1656377dbaca312220fc41c103d94b9f29e81f51804ac82e050e281b6ff100f
test/samples/small/test644000 Bytese3b0c44298fc1c149afbf4c8996fb92427ae41e4649b934ca495991b7852b855
test/samples/small/test.bam64400416 Bytesff48077c20d082ded5e6698a2c1a52eb07837f6be45c46c7cc286c2300fcddea
test/samples/small/test.fa64400836 Bytes290f4e0448d43c1aabfad5aebbbe681577203b9563adf54ac17b2a24343895e6
test/samples/small/test.fai64400104 Bytes85037229a6b8af494b0f94e83e95fc3ec313dc9501a37c7630e20e336cffd99a
test/samples/small/test.sai64400264 Bytesde426d6176b7a81b4248d34b895dc2eef3855ddf814a6555c3f2a9637a0d82bc
test/samples/small/test.tam644001.45 KB50e0092557193c3cd37e7c37e1985159a9e01d95088169b7dc53e885accd18cf
test/samples/small/test_chr.fasta6440069.3 KB95d4a0f2b3f6f031e94607900725717511137c4422fe6736b955efedb34dd067
test/samples/small/test_chr.fasta.amb6440021 Bytes6336c339b1fcdb2e8a1a57b02b5cb766c466c612ccf22c7729ea2c0df165dd57
test/samples/small/test_chr.fasta.ann6440036 Bytese6adabb7e87d43ffef3589c0cc4b0055acb483e5a0d2422bd808a0d0fe585f7d
test/samples/small/test_chr.fasta.bwt6440025.7 KBee7b3af7abb6f10f005ead93785e899fb9c76ff15193210a299b3024c7609573
test/samples/small/test_chr.fasta.fai6440020 Bytes01a3ee5b0d2f0f04103354be64acd62b76de38b27b48cc51a89047d10a7a7b22
test/samples/small/test_chr.fasta.pac6440017.1 KB92d78933cf2c798e667433371e52e18da5165efcd0ac4ed650ae60b99cc59ba3
test/samples/small/test_chr.fasta.rbwt6440025.7 KBa6297169f51fac6e4ace377093eb437ab84dd918513af0e429fe5ab3420ba370
test/samples/small/test_chr.fasta.rpac6440017.1 KB86b875755e1fcc1273c21b10d70548183b53f2296dc540f39668f7e49e4547d9
test/samples/small/test_chr.fasta.rsa644008.56 KB40171c366e070d8e270b2bae1a3a527102c132f90a9e6250e869dacac87aba3d
test/samples/small/test_chr.fasta.sa644008.56 KB37d8c0fa77808cb97925a05e976c5b1aca7ecc47648cdeea7c819cd14f1b91f6
test/samples/small/testu.bam64400428 Bytes5cef48c8411e5f670225d570c49a899053b9318e9dd66cc18d59fe01280e14c4
test/samples/small/testu.bam.bai6440040 Bytes8e69df803348b9f17de13bf63f5656e2992808f3acd2cced5a5cb015e8720823
test/test_bio-samtools.rb64400227 Bytes1d14baaed7eae7852e5aff2837796b787a7d2bdb0ddc73059a823f9692a4acca