bio-gff3-0.8.5

https://rubygems.org

id: 190757

number: 0.8.5

platform: ruby

spec_sha256: 94d50c7467008d54a10514ee0029d3fe7352d400595d5a8812155ec51622c180

sha256: d348ea3d6bb872bd0dd7ffe495c9131871580bf94f47496d3a5ac42a1d89d236

created_at: 2024-05-13 08:16:23 UTC

updated_at: 2024-06-05 22:29:53 UTC

position: 4

version_data_entries_count: 48

uploaded_at: 2011-01-13 11:01:49 UTC

indexed: true

has_extensions:

extensions:

Gem size: 196 KB

Version Data Entries

Total: 48

Unpacked size: 1.03 MB

Full Name	Mode	Size	SHA
VERSION	644	6 Bytes	a92b0248b8baacfaf54e8d59caaca7d5e6b9a0a25ee140c81ea973b4ae25142f
Gemfile	644	365 Bytes	d6e04ce4bae5175e16ffe173445847a3115ba8ec183114bc8c384b4c1a6c563d
Gemfile.lock	644	647 Bytes	a08b133cea06cc90514a22245aa46cb396a48531fb556d89b2384b7eec96973c
LICENSE.txt	644	1.03 KB	41f125d8dfea3eff36350292cdaae7039a8a337aea2f38a1d0f99f74d98341bf
README.rdoc	644	4.58 KB	5740ac3657ae692b58ff76e7bb9f0ea732ec938438f06a96f6b0fc20159eaf7d
Rakefile	644	1.78 KB	4ccac8d627c97d330027c06782960d40607ec8decdf346c31ebca7da647ffd3d
bin/gff3-fetch	755	7.6 KB	61219b9861decafbed45c62aae9b7e127da0966ba70a5c7cc445e401ca49ed5a
bio-gff3.gemspec	644	4.71 KB	7f64dce26fbf1a1681e4cfd644a1e0643973d5df3aa4b9ba222d0efaa9723e41
lib/bio-gff3.rb	644	834 Bytes	837a5a174e14b069015e341ef4a9568495aa0b8dc2a45df1a67b1833e8e34de8
lib/bio/db/gff/digest/gffinmemory.rb	644	2.25 KB	4b3e52d18c647a4a0dc5dc17af38ea9771f31ad4c926ad36ce27e378389abe16
lib/bio/db/gff/digest/gffnocache.rb	644	3.71 KB	7c5608173db7179e24dc4b6499d53f2980a337783e9e06820e782af0f89feb52
lib/bio/db/gff/digest/gffparser.rb	644	5.47 KB	1106e6a53e8c34640dbe35a73131a743a9c239be5c4b181eb84b7379e7276a59
lib/bio/db/gff/file/gfffasta.rb	644	1.49 KB	a0513eb9db1028703f331a13e787fdd61ac2cebfa138e1db6d7df9a9725b6883
lib/bio/db/gff/file/gfffileiterator.rb	644	2.12 KB	58fe43467a5b0e68d87e9207d0ff9503679cd1fe285c73678d3183fd1bac9ecf
lib/bio/db/gff/gff3.rb	644	766 Bytes	fefe1bc83a4f906a7dccfaad344c07d3ea7de309c6bc736223d5d22bf7178998
lib/bio/db/gff/gff3fasta.rb	644	261 Bytes	9ae3fa75fcb3668979945c2503c7abfa57d54bf648f70b91e7c0b83a4965eb41
lib/bio/db/gff/gff3parsefile.rb	644	655 Bytes	a7a9359f97543ae25fda291b87e7055ffe19e98eba38ae6891119dca9c07e7c1
lib/bio/db/gff/gff3parserec.rb	644	1.63 KB	19a8a6dc93004bad6e4832adffcad911b7a7671a85ff6e621c250346e29ff5d3
lib/bio/db/gff/gffcomponent.rb	644	3.05 KB	4203afe57e1ad846673035a47deffc1069f1c5545d5afa03c6326e390de164df
lib/bio/db/gff/gffrecord.rb	644	1020 Bytes	894fedf8eb2a51d2aed85d7de01d91decb155d751f34e7f00da16cff391c6bcd
lib/bio/db/gff/gffsection.rb	644	1.05 KB	0a60fd57520abedec74d3960ed611c2435102bfece70d2239af1d677ad80edb8
lib/bio/db/gff/gffsequence.rb	644	5.92 KB	ae2b9f74b7a0eb16a06c7d13432fce9c5c4c778582f19812efad9338098abebb
lib/bio/db/gff/gffvalidate.rb	644	2.76 KB	d7757efbdda726e9240f9800ede1ff28cc703e16e497f133e5fb42745cd16456
lib/bio/output/gfffastawriter.rb	644	649 Bytes	9fce4488f5b5339b4df7036b28178a040e24be444f563ab06eed9a8fec343b67
lib/bio/output/gfflogger.rb	644	612 Bytes	7a80c379a30f5eb400327fbffee80d73ecb54adab9fe6880e6168fba0e89b8db
lib/bio/system/lruhash.rb	644	4.49 KB	6102d10712492cb309da843f6b4bd9feeb5e3ed092780bf1f22f4f9f9c704b0e
spec/gff3_assemble2_spec.rb	644	4.49 KB	ce8abace3d60d57d524a1750e7ac9d0b8ebe015b95d7d89bf64366af646f324b
spec/gff3_assemble3_spec.rb	644	4.5 KB	379aec4db95f1c14f23b9e69c8c7e53a9856ba6bbe6ed8b8152477759368e997
spec/gff3_assemble_spec.rb	644	20.8 KB	6528346db002cfb1520b83f473b219ce13768b0c7b36371d77bebfbc94e72409
spec/gff3_fileiterator_spec.rb	644	954 Bytes	426e23bf26b88ab47c7123e5b7316a6ed0ec412add3e5935fca56a78e9d22184
spec/gffdb_spec.rb	644	3.17 KB	dfad336507646672c1fd271be7b09a9defce6e98b7e0031fe5a7323d1a38d38a
spec/gffparserec.rb	644	1.45 KB	6c5012372e9f33fa0ca08de7e3f1c9457c354624b196b991e01f7db42b263531
test/data/gff/MhA1_Contig1133.fa	644	33.1 KB	0b06d5559323599723ad6b95a1604814ae9860b18cce22606e0e6b33781d5441
test/data/gff/MhA1_Contig1133.gff3	644	234 KB	47e7480323387db69e23b4cacb6284083026f8827b402444122d5594406c460b
test/data/gff/MhA1_Contig125.fa	644	53.1 KB	dddb7a53b70375cd6cf3a1e51ca9f69827ae48c1c576f7e91160347cd63244b3
test/data/gff/MhA1_Contig125.gff3	644	599 KB	d13f19c76ddcbd5058203bf127b1cbaf6cd91255c5c6db2353133c7d3a5d4066
test/data/gff/standard.gff3	644	1.36 KB	8a9e421ec5aa766b7ee3621284962c7c0c1732fb183f6379191ff2a1afa2db95
test/data/gff/test-cds.gff3	644	9.29 KB	f5459e9311a230f31ae700c758072b327ccb21f3fdf2275b38f6fce189fcd3b2
test/data/gff/test-ext-fasta.fa	644	830 Bytes	0e9144169a06cadde0d32cfd307920a82241bfdb4e99a11cd5ccab243075c0f0
test/data/gff/test-ext-fasta.gff3	644	3.27 KB	7a8922c1f19fa44ad502b05aed6181af7fefeaa2ca5e4ad80f12211a3c5be2c5
test/data/gff/test.gff3	644	4.18 KB	833ca24c196c7405bf006f9a3e2e927ef3ce4d42bde2778a6fb8d2877be5f480
test/data/regression/test_ext_gff3.rtest	644	3.58 KB	c56f485ab98cf72e7bde7dac5c45d13feaaf51742aa5ad12235c3670f2ba50f1
test/data/regression/test_gff3.rtest	644	3.58 KB	e8b1b43f8734d7a3efac2c7bd66ce7c34d368091045e22de96ca5e4a8e5b1180
test/data/regression/test_nocache_ext_gff3.rtest	644	3.32 KB	ba2d574edff58e6c696666a815c7e9431d4702e677e14cf3b7864d2aa0da679f
test/data/regression/test_nocache_gff3.rtest	644	3.58 KB	e8b1b43f8734d7a3efac2c7bd66ce7c34d368091045e22de96ca5e4a8e5b1180
test/helper.rb	644	429 Bytes	c00b11830fb8249416462e0a02a19b1fd74c08f9bbec8c79fd943ccb75156172
test/regressiontest.rb	644	1.29 KB	be2b405d9679f7a18cee44f8e18cfb1494d4c05eaefb3b50d5d82b65468e049c
test/test_bio-gff3.rb	644	1 KB	5923c332281f43abb7ffa4d3f1ca3b61e5392d171bc1b9d721396d56ac9bf610