Sha256: 9fce4488f5b5339b4df7036b28178a040e24be444f563ab06eed9a8fec343b67
Contents?: true
Size: 649 Bytes
Versions: 7
Compression:
Stored size: 649 Bytes
Contents
module Bio
module GFFbrowser
class FastaWriter
def initialize translate, validate
@do_translate = translate
@do_validate = validate
end
def put id, seq
puts '>'+id
put_seq id, seq
end
private
def put_seq id, seq
if @do_translate or @do_validate
ntseq = Bio::Sequence::NA.new(seq)
aaseq = ntseq.translate
puts aaseq if @do_translate
if @do_validate
raise 'Validation problem of '+id if aaseq.count('*') > 1
end
return if @do_translate
end
puts seq
end
end
end
end
Version data entries
7 entries across 7 versions & 1 rubygems