viral_seq-1.7.1

https://rubygems.org

id: 1260408

number: 1.7.1

platform: ruby

spec_sha256: bae91d2814b539257258bdf4ca05590f3d7a4fc0aa52204079dafba4596c2d40

sha256: 47439dbf722af073d7a3cf846a615cddd19bc88814d675978b845b090e1213d1

created_at: 2024-05-13 08:33:03 UTC

updated_at: 2024-06-13 12:27:36 UTC

position: 4

version_data_entries_count: 39

uploaded_at: 2023-05-12 20:22:22 UTC

indexed: true

has_extensions:

extensions:

Gem size: 3.54 MB

Version Data Entries

Total: 39

Unpacked size: 3.99 MB

Full Name	Mode	Size	SHA
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.rspec	100644	53 Bytes	06245e25d7cf46b4fbde27b5faa0df0d4110e11918eeb5848de4ab2aff897b59
.travis.yml	100644	106 Bytes	fe5db550d8498ffaf0658bd23dded2117b24ff893cb54d71bb1d69185feca411
CODE_OF_CONDUCT.md	100644	3.15 KB	4e063fbaa9876b3b52cd5c5357ec6ae25a7f28bda9670489393b1e8da7f09673
Gemfile	100644	94 Bytes	32c7f1953f2a15b48d7e360ca45b879409c5fa8a2eebeec809ea6c7782dedce1
Gemfile.lock	100644	1.03 KB	8b6d0ba858a23528d4c4f763c49e893807086b0986fbdd38cbe5c8ddf584b186
LICENSE.txt	100644	1.08 KB	7aa7a19a7f5deba9efaaa6b1211af1ab9bbc08937f00209f9846213c16f02129
README.md	100644	13.4 KB	60a2ba13cee7ef0a11ca7602646987e0a4debbddef933d32d0a4696d901e839f
Rakefile	100644	117 Bytes	dca0f4190a3b018ccfd644daa6600f4fe5d11b3330ecb4c564a2971465e5b016
bin/locator	100755	3.51 KB	f934a958489109ad3e49eca062fc0214ed394226263e6ac8b42b2ff6c3a8c0b9
bin/tcs	100755	20.9 KB	3a779f6eaa09b21c8b9a159211f4d713affa6c8a5a57167523042a85c98db753
bin/tcs_log	100755	26.1 KB	a06b6cabeaa79c07ce5d224c724c600b9cde38e48285851f4263f2329a4043f8
bin/tcs_sdrm	100755	14.3 KB	d74bc42a2d8658c35e2bc31ca8df724a24c1ee40bf516bc523ac8f58692e25f7
docs/assets/img/cover.jpg	100644	1.08 MB	340f94e73e9491560f06f13712df050b54e74bee85a0ed43e02ac9c6c6fc9bd8
docs/dr.json	100644	2.32 KB	69d2afbe345e6458e6a292e560932ef37b455df508caff316008a5929f6843e4
docs/sample_miseq_data/hivdr_control/r1.fastq.gz	100644	1.1 MB	a60e0592621b92ae49c31cbdae72d25a1c411ec55aa38ddd492433e93648f257
docs/sample_miseq_data/hivdr_control/r2.fastq.gz	100644	1.33 MB	e488771ba6cbee7f540611a15fe4e80010a18efd0f7b512962e88af8c4039de8
docs/variants_structure.pdf	100644	84.9 KB	6213f8d312c6475e0a7f5f69c3234aba94712fa1d9ef39b595bd285c74d2452f
lib/viral_seq.rb	100644	1.87 KB	6f630f9f3e356442212cf69b1e38c443393dd4dc90d8a98714a00f5b03b93e3a
lib/viral_seq/constant.rb	100644	137 KB	9509dc2c69d93077b27309c599d8b2b428067888c9bc1cfcf55d6dee544896cc
lib/viral_seq/enumerable.rb	100644	3.21 KB	59aaac6421054f3a1b0886673cdde68bdfe5c6e6c5cc0b395d24c25eda681953
lib/viral_seq/hash.rb	100644	1.33 KB	e71a962945bc24a01660b4e76fc350471bf75b0d5fa41d7c1e43bb5142bca673
lib/viral_seq/hivdr.rb	100644	22.5 KB	654476bc6e11ffcb1dad0eb9c350f9d9dee1123c93d8eb773842379509518675
lib/viral_seq/math.rb	100644	5.74 KB	076053ffe4b22fe870d3ef6b0ac63c0f4cd41d74399f410f37f9fa638132fb7f
lib/viral_seq/muscle.rb	100644	2.77 KB	54617f6d6be7d1b802a2247776aa8bdc7c0f6fd3a46207079e43adf8a2939473
lib/viral_seq/pid.rb	100644	719 Bytes	82f3aa9f947f9819d277fff83a04c962c560ca5b7f90dad9ae0740f2ba0919e8
lib/viral_seq/recency.rb	100644	1.67 KB	011be6d5f6f420e76311c201a938e2eea157a8c02f50a3297ef2e65c983d6cd7
lib/viral_seq/ref_seq.rb	100644	30.5 KB	8138f40402fddf1747c91c6f0ff0fd69aea3372da588dd7dfbe2052b55e7eaa0
lib/viral_seq/rubystats.rb	100644	4.06 KB	59edd9a885b04b7481f15e3896dfe73a0f48835cd6a0bd9576ed212e0e99c703
lib/viral_seq/sdrm.rb	100644	3.72 KB	805f1a7867859c8029e9678f10676677c84f3d620ebe28cde653f5b51f579330
lib/viral_seq/seq_hash.rb	100644	48.6 KB	38daf422a62e40f3c6b0c9500d101e12bc78da9ad45325935e35c255c332a6ac
lib/viral_seq/seq_hash_pair.rb	100644	9.76 KB	dbac73e7bd628dbb295ae462d041a234fcd693c37a419e743aaf5c79c7ece750
lib/viral_seq/sequence.rb	100644	17 KB	7da9f761da8c68d90fe7b9aef4f216dc2c084a837554d36b03e99dcfe6070008
lib/viral_seq/string.rb	100644	4.07 KB	201cb0e7c0259e2163240e276d12a1d7da6c5a15de5f461b0a0f5ae595897426
lib/viral_seq/tcs_core.rb	100644	11.5 KB	3b2bbef083741cbd9a35cc5de8fdc94c3e7d245830d6aa30afe1f6c631fc15ea
lib/viral_seq/tcs_dr.rb	100644	3.26 KB	e56c917f6dcce31a49d1c068b832b408a653c317caa08e7ac210977803a4b456
lib/viral_seq/tcs_json.rb	100644	6.79 KB	594b647f37ad42678b3b6212d1b86cb497c529f1304f0fa20fbe5f5401fc2681
lib/viral_seq/version.rb	100644	109 Bytes	2b8ca20f5873a45d2219c890dda8e3271bc6594740dc6cc92754388be037ec6b
viral_seq.gemspec	100644	2 KB	c36f6b7a83a9d3d79e88c7a8ece18811895a9a34d7004a6105c23066d9cd3dc5