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Contents
module ViralSeq
module PID
# generate all Primer ID combinations given the length of Primer ID
# @param l [Integer] the length of the Primer ID.
# @example generate a pool of Primer IDs with length of 10
# primer_id_pool = ViralSeq::PID.generate_pool(10) # 10 is the length of Primer ID
# puts primer_id_pool.size #should be 4^10
# => 1048576
def self.generate_pool(l=8)
nt = ['A','T','C','G']
pid_pool = ['A','T','C','G']
(l-1).times do
pid_pool = pid_pool.product(nt)
pid_pool.collect! do |v|
v.join("")
end
end
return pid_pool
end # end of .generate_primer_id_pool
end # end of Pid
end # end of ViralSeq
Version data entries
38 entries across 38 versions & 1 rubygems