transcriptomics_short_reads.txt in seqtrimnext-2.0.54

- old
+ new

@@ -6,20 +6,20 @@
 # Help: <br/><b>Plugin list and aplication order:</b><br/>
 
 # Help: <ul>
 # Help: <li>PluginIndeterminations: retaining the longest sequence fragment without indeterminations (N)</li>
 # Help: <li>PluginFindPolyAt: trimming PolyA and PolyT. After a PolyT, the sequence is checked for low complexity. </li>
-
+# Help: <li>PluginAbAdapters: trimming the Illumina adapters</li>
 # Help: <li>PluginUserContaminants: discarding sequences matching any entry in the user contaminant database saving them in a separate file</li>
 
 # Help: <li>PluginContaminants: trimming the contaminant fragments found in the contaminant database. When contamination is prevalent, sequences are rejected. </li>
 # Help: <li>PluginVectors: trimming any cloning vector found in SeqTrimNEXT database. </li>
 # Help: <li>PluginLowQuality: trimming low quality regions from sequences. </li>
 # Help: <li>PluginLowComplexity: sequences with low complexity are stored on a separate file. </li>
 # Help: </ul>
 
-plugin_list = PluginIndeterminations,PluginFindPolyAt,PluginUserContaminants,PluginContaminants,PluginVectors,PluginLowQuality,PluginLowComplexity
+plugin_list = PluginIndeterminations,PluginFindPolyAt,PluginAbAdapters,PluginUserContaminants,PluginContaminants,PluginVectors,PluginLowQuality,PluginLowComplexity
 
 contaminants_db="contaminants.fasta cont_ribosome.fasta"
 
 generate_initial_stats = false
 
@@ -27,5 +27,7 @@
 
 min_insert_size_trimmed = 30
 
 # do not remove cloned sequences
 remove_clonality=false
+
+adapters_ab_db="adapters_illumina.fasta"