bin/comPatMondo.rb in pets-0.2.3 vs bin/comPatMondo.rb in pets-0.2.4

@@ -2,18 +2,15 @@
 
 # Script to compare a patient cohort against MONDO ontology defined diseases
 # @author Fernando Moreno Jabato <jabato(at)uma(dot)es>
 
 ROOT_PATH = File.dirname(__FILE__)
-EXTERNAL_DATA = File.expand_path(File.join(ROOT_PATH, '..', 'external_data'))
-MONDO_FILE = File.join(EXTERNAL_DATA, 'mondo.obo')
-HPO_FILE = File.join(EXTERNAL_DATA, 'hp.obo')
-EXTERNAL_CODE = File.expand_path(File.join(ROOT_PATH, '..', 'external_code'))
 $: << File.expand_path(File.join(ROOT_PATH, '..', 'lib', 'pets'))
 
 require 'optparse'
 require 'semtools'
 require 'csv'
+require 'constants.rb'
 require 'coPatReporterMethods.rb'
 
 ##########################
 # FUNCTIONS
 ##########################