supplemental/python/biointerchange/sio.py in biointerchange-0.1.3 vs supplemental/python/biointerchange/sio.py in biointerchange-0.2.0

- old
+ new

@@ -811,18 +811,27 @@ def is_broad_match_to(cls): return _namespace_SIO('http://semanticscience.org/resource/SIO_000491') @classmethod def is_dissimilar_to(cls): + """is dissimilar to is a relation between two entities in which one is considered dissimilar to the other based on some criteria. + (cls, http://semanticscience.org/resource/SIO_000495) + """ return _namespace_SIO('http://semanticscience.org/resource/SIO_000495') @classmethod def is_opposite_to(cls): + """is opposite to is a relation between two entities in which one is diametrically opposed to the other. + (cls, http://semanticscience.org/resource/SIO_000496) + """ return _namespace_SIO('http://semanticscience.org/resource/SIO_000496') @classmethod def is_version_of(cls): + """is version of is a relation that holds between any two versions in which one is a subsequent or alternate version of (cls, through a branch). + (http://semanticscience.org/resource/SIO_000497) + """ return _namespace_SIO('http://semanticscience.org/resource/SIO_000497') @classmethod def has_parameter(cls): """has parameter is a relation between a process and an information content entity which modulates the behaviour of some participant. @@ -1185,10 +1194,59 @@ (cls, http://semanticscience.org/resource/SIO_000975) """ return _namespace_SIO('http://semanticscience.org/resource/SIO_000975') @classmethod + def is_specialization_of(cls): + """is specialization of is a relation between a more specific instance (cls, in terms of spatial/temporal localization & other attributres) than the other. + (http://semanticscience.org/resource/SIO_001096) + """ + return _namespace_SIO('http://semanticscience.org/resource/SIO_001096') + + @classmethod + def is_generalization_of(cls): + """is generalization of is a relation between a more general instance (cls, in terms of spatial/temporal localization & other attributres) than the other. + (http://semanticscience.org/resource/SIO_001097) + """ + return _namespace_SIO('http://semanticscience.org/resource/SIO_001097') + + @classmethod + def is_alternate_of(cls): + """is alternate of relates two specialized instances. + (cls, http://semanticscience.org/resource/SIO_001098) + """ + return _namespace_SIO('http://semanticscience.org/resource/SIO_001098') + + @classmethod + def is_mutual_capability_of(cls): + return _namespace_SIO('http://semanticscience.org/resource/SIO_001101') + + @classmethod + def regulates(cls): + return _namespace_SIO('http://semanticscience.org/resource/SIO_001154') + + @classmethod + def is_regulated_by(cls): + return _namespace_SIO('http://semanticscience.org/resource/SIO_001155') + + @classmethod + def results_in(cls): + return _namespace_SIO('http://semanticscience.org/resource/SIO_001156') + + @classmethod + def is_result_of(cls): + return _namespace_SIO('http://semanticscience.org/resource/SIO_001157') + + @classmethod + def affects(cls): + return _namespace_SIO('http://semanticscience.org/resource/SIO_001158') + + @classmethod + def is_affected_by(cls): + return _namespace_SIO('http://semanticscience.org/resource/SIO_001159') + + @classmethod def encodes(cls): """A relation between an biological information content entity and a product that it (cls, directly/indirectly) encodes. (http://semanticscience.org/resource/SIO_010078) """ return _namespace_SIO('http://semanticscience.org/resource/SIO_010078') @@ -1381,10 +1439,14 @@ (cls, http://semanticscience.org/resource/SIO_000036) """ return _namespace_SIO('http://semanticscience.org/resource/SIO_000036') @classmethod + def spatial_quantity(cls): + return _namespace_SIO('http://semanticscience.org/resource/SIO_000037') + + @classmethod def physical_dimensional_quantity(cls): return _namespace_SIO('http://semanticscience.org/resource/SIO_000037') @classmethod def a_D_extent_quantity(cls): @@ -1428,12 +1490,12 @@ @classmethod def volume(cls): return _namespace_SIO('http://semanticscience.org/resource/SIO_000049') @classmethod - def composition(cls): - """composition is the quality of having anatomical parts. + def compositional_quality(cls): + """composition quality is a quality that describes its composition or anatomy. (cls, http://semanticscience.org/resource/SIO_000051) """ return _namespace_SIO('http://semanticscience.org/resource/SIO_000051') @classmethod @@ -2453,12 +2515,12 @@ """ return _namespace_SIO('http://semanticscience.org/resource/SIO_000275') @classmethod def emotion(cls): - """An emotion is a quality that an individual experiences due to an internal state of being or an involuntary physiological response. - (cls, http://semanticscience.org/resource/SIO_000276) + """An emotion is a process (cls, experience) that arises internally or from an involuntary physiological response to a stimulus. + (http://semanticscience.org/resource/SIO_000276) """ return _namespace_SIO('http://semanticscience.org/resource/SIO_000276') @classmethod def mass(cls): @@ -2718,11 +2780,11 @@ def to_modify(cls): return _namespace_SIO('http://semanticscience.org/resource/SIO_000343') @classmethod def to_record(cls): - """To record is the capability to register or collect information in a specified format on some physical medium. + """To record is the capability to detect and transcribe information in a specified format on some physical medium. (cls, http://semanticscience.org/resource/SIO_000344) """ return _namespace_SIO('http://semanticscience.org/resource/SIO_000344') @classmethod @@ -2998,10 +3060,13 @@ def file(cls): return _namespace_SIO('http://semanticscience.org/resource/SIO_000396') @classmethod def to_provide(cls): + """to provide is the capability to make available some object to another that requires it. + (cls, http://semanticscience.org/resource/SIO_000397) + """ return _namespace_SIO('http://semanticscience.org/resource/SIO_000397') @classmethod def nurse(cls): return _namespace_SIO('http://semanticscience.org/resource/SIO_000398') @@ -3868,10 +3933,13 @@ def collection_of_points(cls): return _namespace_SIO('http://semanticscience.org/resource/SIO_000546') @classmethod def to_cause_disease(cls): + """to cause disease is the capability to materially change a biological object in that it functions abnormally. + (cls, http://semanticscience.org/resource/SIO_000547) + """ return _namespace_SIO('http://semanticscience.org/resource/SIO_000547') @classmethod def to_reduce_the_activation_energy(cls): return _namespace_SIO('http://semanticscience.org/resource/SIO_000549') @@ -4090,11 +4158,11 @@ """ return _namespace_SIO('http://semanticscience.org/resource/SIO_000588') @classmethod def regulation(cls): - """regulation is the imposition of a requirement or action of one party to another. + """regulation is a process that modulates the attributes of an object or process. (cls, http://semanticscience.org/resource/SIO_000589) """ return _namespace_SIO('http://semanticscience.org/resource/SIO_000589') @classmethod @@ -4157,10 +4225,13 @@ """ return _namespace_SIO('http://semanticscience.org/resource/SIO_000598') @classmethod def structure(cls): + """structure is the specification that refers to the composition and arrangement of parts of an object. + (cls, http://semanticscience.org/resource/SIO_000600) + """ return _namespace_SIO('http://semanticscience.org/resource/SIO_000600') @classmethod def computational_entity(cls): """a computational entity is an information content entity operated on using some computational system. @@ -4179,18 +4250,27 @@ """ return _namespace_SIO('http://semanticscience.org/resource/SIO_000608') @classmethod def regulation_of_process(cls): + """regulation of a process is a process that modulates the duration, frequency, spatial extent of a target process. + (cls, http://semanticscience.org/resource/SIO_000609) + """ return _namespace_SIO('http://semanticscience.org/resource/SIO_000609') @classmethod def regulation_of_capability(cls): + """regulation of capability is the regulation of the ability of one party by another. + (cls, http://semanticscience.org/resource/SIO_000610) + """ return _namespace_SIO('http://semanticscience.org/resource/SIO_000610') @classmethod def regulation_of_catalytic_capability(cls): + """the regulation of the enzymatic activity. + (cls, http://semanticscience.org/resource/SIO_000611) + """ return _namespace_SIO('http://semanticscience.org/resource/SIO_000611') @classmethod def representation(cls): """A representation is a entity that in some way represents another entity (cls, or attribute thereof). @@ -4280,25 +4360,28 @@ def chemical_functional_group(cls): return _namespace_SIO('http://semanticscience.org/resource/SIO_000624') @classmethod def chemical_structure(cls): - """Chemical structure is the quality of molecular geometry and electronic structure. + """chemical structure is the structure of a chemical entity in terms of its molecular geometry and electronic structure. (cls, http://semanticscience.org/resource/SIO_000625) """ return _namespace_SIO('http://semanticscience.org/resource/SIO_000625') @classmethod def molecular_structure(cls): + """Molecular structure is the spatial arrangement of atoms in a molecule and the chemical bonds that hold the atoms together. + (cls, http://semanticscience.org/resource/SIO_000626) + """ return _namespace_SIO('http://semanticscience.org/resource/SIO_000626') @classmethod def molecular_geometry(cls): - """Molecular geometry is the spatial arrangement of atoms in a molecule and the chemical bonds that hold the atoms together. - (cls, http://semanticscience.org/resource/SIO_000627) + """Molecular structure is the spatial arrangement of atoms in a molecule and the chemical bonds that hold the atoms together. + (cls, http://semanticscience.org/resource/SIO_000626) """ - return _namespace_SIO('http://semanticscience.org/resource/SIO_000627') + return _namespace_SIO('http://semanticscience.org/resource/SIO_000626') @classmethod def probability_measure(cls): """a probability measure is quantity of how likely it is that some event will occur. (cls, http://semanticscience.org/resource/SIO_000638) @@ -4446,11 +4529,11 @@ @classmethod def institute(cls): return _namespace_SIO('http://semanticscience.org/resource/SIO_000688') @classmethod - def to_be_part_of(cls): + def to_be_a_part_of(cls): """to be a part of is the capability to be assembled into a larger structure that persists in time. (cls, http://semanticscience.org/resource/SIO_000689) """ return _namespace_SIO('http://semanticscience.org/resource/SIO_000689') @@ -4460,15 +4543,14 @@ (cls, http://semanticscience.org/resource/SIO_000690) """ return _namespace_SIO('http://semanticscience.org/resource/SIO_000690') @classmethod - def to_be_part_of_a_group(cls): - return _namespace_SIO('http://semanticscience.org/resource/SIO_000691') - - @classmethod def to_be_actively_interacted_with(cls): + """to be actively interacted with is the capability to be manipulated by some device or agent. + (cls, http://semanticscience.org/resource/SIO_000692) + """ return _namespace_SIO('http://semanticscience.org/resource/SIO_000692') @classmethod def corporation(cls): """A corporation is an organization that is granted a charter recognizing it as a separate legal entity. @@ -4476,18 +4558,27 @@ """ return _namespace_SIO('http://semanticscience.org/resource/SIO_000693') @classmethod def to_be_passively_interacted_with(cls): + """to be passively interacted with is the capability of an object to be observed. + (cls, http://semanticscience.org/resource/SIO_000694) + """ return _namespace_SIO('http://semanticscience.org/resource/SIO_000694') @classmethod def to_be_recorded(cls): + """to be recorded is the capability of an object to be observed in such a way that information about it can be transcribed in a specified format on some physical medium. + (cls, http://semanticscience.org/resource/SIO_000695) + """ return _namespace_SIO('http://semanticscience.org/resource/SIO_000695') @classmethod def to_be_observed(cls): + """to be observed is the capability of an object to be perceived. + (cls, http://semanticscience.org/resource/SIO_000696) + """ return _namespace_SIO('http://semanticscience.org/resource/SIO_000696') @classmethod def to_disassemble(cls): """to disassemble is to physically separate the parts of an object. @@ -4509,11 +4600,11 @@ """ return _namespace_SIO('http://semanticscience.org/resource/SIO_000701') @classmethod def to_be_interacted_with(cls): - """to be interacted with is the capability of an object to be physically touched or perturbed. + """to be interacted with is the capability of an object to be target of a physical interaction. (cls, http://semanticscience.org/resource/SIO_000702) """ return _namespace_SIO('http://semanticscience.org/resource/SIO_000702') @classmethod @@ -4612,10 +4703,13 @@ """ return _namespace_SIO('http://semanticscience.org/resource/SIO_000721') @classmethod def to_be_compared(cls): + """to be compared is the capability of an object to be examined in order to note the similarities or differences among a set of objects. + (cls, http://semanticscience.org/resource/SIO_000722) + """ return _namespace_SIO('http://semanticscience.org/resource/SIO_000722') @classmethod def to_compare(cls): """to compare is the capability to examine in order to note the similarities or differences among a set of objects. @@ -4630,10 +4724,13 @@ """ return _namespace_SIO('http://semanticscience.org/resource/SIO_000724') @classmethod def to_be_examined(cls): + """to be examined is the capability of an object to be observed in a detailed manner. + (cls, http://semanticscience.org/resource/SIO_000725) + """ return _namespace_SIO('http://semanticscience.org/resource/SIO_000725') @classmethod def administrative_role(cls): return _namespace_SIO('http://semanticscience.org/resource/SIO_000726') @@ -4790,13 +4887,13 @@ @classmethod def database_column(cls): return _namespace_SIO('http://semanticscience.org/resource/SIO_000757') @classmethod - def disorder(cls): - """disorder is a quality in one or more anatomical parts (cls, an anatomical collection) that are considered abnormal - (http://semanticscience.org/resource/SIO_000758) + def disordered(cls): + """disordered is a structural quality in which the parts of an object are non-rigid. + (cls, http://semanticscience.org/resource/SIO_000758) """ return _namespace_SIO('http://semanticscience.org/resource/SIO_000758') @classmethod def unique_cell(cls): @@ -4830,18 +4927,18 @@ (cls, http://semanticscience.org/resource/SIO_000764) """ return _namespace_SIO('http://semanticscience.org/resource/SIO_000764') @classmethod - def p_value(cls): + def probability_value(cls): """a p-value or probability value is the probability of obtaining a test statistic at least as extreme as the one that was actually observed, assuming that the null hypothesis is true (cls, http://semanticscience.org/resource/SIO_000765) """ return _namespace_SIO('http://semanticscience.org/resource/SIO_000765') @classmethod - def probability_value(cls): + def p_value(cls): """a p-value or probability value is the probability of obtaining a test statistic at least as extreme as the one that was actually observed, assuming that the null hypothesis is true (cls, http://semanticscience.org/resource/SIO_000765) """ return _namespace_SIO('http://semanticscience.org/resource/SIO_000765') @@ -5122,11 +5219,11 @@ """ return _namespace_SIO('http://semanticscience.org/resource/SIO_000815') @classmethod def apathy(cls): - """apathy is an emotion exhibited by lack of interest, enthusiasm, or concern + """apathy is an emotion characterized by lack of interest, enthusiasm, or concern (cls, http://semanticscience.org/resource/SIO_000816) """ return _namespace_SIO('http://semanticscience.org/resource/SIO_000816') @classmethod @@ -5157,11 +5254,11 @@ """ return _namespace_SIO('http://semanticscience.org/resource/SIO_000820') @classmethod def contempt(cls): - """contempt is disgust towards a lower status individual. + """contempt is disgust towards a lower status individual. (cls, http://semanticscience.org/resource/SIO_000821) """ return _namespace_SIO('http://semanticscience.org/resource/SIO_000821') @classmethod @@ -5343,11 +5440,11 @@ """ return _namespace_SIO('http://semanticscience.org/resource/SIO_000846') @classmethod def indifference(cls): - """indifference is an emotion exhibited by lack of interest, concern, or sympathy. + """indifference is an emotion characterized by lack of interest, concern, or sympathy. (cls, http://semanticscience.org/resource/SIO_000847) """ return _namespace_SIO('http://semanticscience.org/resource/SIO_000847') @classmethod @@ -5432,11 +5529,11 @@ """ return _namespace_SIO('http://semanticscience.org/resource/SIO_000859') @classmethod def rage(cls): - """Rage is a feeling of intense anger that is associated with the Fight-or-flight response. + """Rage is a feeling of intense anger that is associated with the Fight-or-flight response. (cls, http://semanticscience.org/resource/SIO_000860) """ return _namespace_SIO('http://semanticscience.org/resource/SIO_000860') @classmethod @@ -6762,10 +6859,17 @@ (cls, http://semanticscience.org/resource/SIO_001073) """ return _namespace_SIO('http://semanticscience.org/resource/SIO_001073') @classmethod + def selector(cls): + """a text span is a subset of contiguous sequence of characters of a textual entity. + (cls, http://semanticscience.org/resource/SIO_001073) + """ + return _namespace_SIO('http://semanticscience.org/resource/SIO_001073') + + @classmethod def t_statistic(cls): """a t-statistic is a ratio of the departure of an estimated parameter from its notional value and its standard error. (cls, http://semanticscience.org/resource/SIO_001074) """ return _namespace_SIO('http://semanticscience.org/resource/SIO_001074') @@ -6826,10 +6930,465 @@ (cls, http://semanticscience.org/resource/SIO_001083) """ return _namespace_SIO('http://semanticscience.org/resource/SIO_001083') @classmethod + def liquid_solution(cls): + """a liquid solution is a heterogeneous substance in a liquid state. + (cls, http://semanticscience.org/resource/SIO_001084) + """ + return _namespace_SIO('http://semanticscience.org/resource/SIO_001084') + + @classmethod + def to_remove_a_covalent_bond(cls): + """to remove a covalent bond is the capability to covalently modify a chemical entity by removing a covalent bond. + (cls, http://semanticscience.org/resource/SIO_001085) + """ + return _namespace_SIO('http://semanticscience.org/resource/SIO_001085') + + @classmethod + def to_add_a_covalent_bond(cls): + """to add a covalent bond is the capability to covalently modify a chemical entity by adding a covalent bond. + (cls, http://semanticscience.org/resource/SIO_001086) + """ + return _namespace_SIO('http://semanticscience.org/resource/SIO_001086') + + @classmethod + def to_modify_electronically(cls): + return _namespace_SIO('http://semanticscience.org/resource/SIO_001087') + + @classmethod + def concentration(cls): + """concentration is the quantity of a constituent divided by the total volume of a mixture. + (cls, http://semanticscience.org/resource/SIO_001088) + """ + return _namespace_SIO('http://semanticscience.org/resource/SIO_001088') + + @classmethod + def pH(cls): + """pH is a measure of the activity of the (cls, solvated) hydrogen ion. + (http://semanticscience.org/resource/SIO_001089) + """ + return _namespace_SIO('http://semanticscience.org/resource/SIO_001089') + + @classmethod + def homogeneous(cls): + """homogeneous is a quality that describes the uniform composition of an object. + (cls, http://semanticscience.org/resource/SIO_001090) + """ + return _namespace_SIO('http://semanticscience.org/resource/SIO_001090') + + @classmethod + def heterogeneous(cls): + """homogeneous is a quality that describes the varied composition of an object. + (cls, http://semanticscience.org/resource/SIO_001091) + """ + return _namespace_SIO('http://semanticscience.org/resource/SIO_001091') + + @classmethod + def structural_quality(cls): + """a structural quality is a quality of an object that describes its structure. + (cls, http://semanticscience.org/resource/SIO_001092) + """ + return _namespace_SIO('http://semanticscience.org/resource/SIO_001092') + + @classmethod + def rigid(cls): + return _namespace_SIO('http://semanticscience.org/resource/SIO_001093') + + @classmethod + def bent(cls): + return _namespace_SIO('http://semanticscience.org/resource/SIO_001094') + + @classmethod + def curved(cls): + return _namespace_SIO('http://semanticscience.org/resource/SIO_001095') + + @classmethod + def electronic_structure(cls): + """electronic structure is the electron configuration is the distribution of electrons of an atom or molecule (cls, or other physical structure) in atomic or molecular orbitals. + (http://semanticscience.org/resource/SIO_001099) + """ + return _namespace_SIO('http://semanticscience.org/resource/SIO_001099') + + @classmethod + def electronic_configuration(cls): + """electronic structure is the electron configuration is the distribution of electrons of an atom or molecule (cls, or other physical structure) in atomic or molecular orbitals. + (http://semanticscience.org/resource/SIO_001099) + """ + return _namespace_SIO('http://semanticscience.org/resource/SIO_001099') + + @classmethod + def crystal_structure(cls): + """a crystal structure is the arrangement of atoms or molecules in a crystalline liquid or solid. + (cls, http://semanticscience.org/resource/SIO_001100) + """ + return _namespace_SIO('http://semanticscience.org/resource/SIO_001100') + + @classmethod + def to_interact_and_to_be_interacted_with(cls): + return _namespace_SIO('http://semanticscience.org/resource/SIO_001102') + + @classmethod + def to_gain_a_covalent_bond(cls): + return _namespace_SIO('http://semanticscience.org/resource/SIO_001103') + + @classmethod + def to_lose_a_covalent_bond(cls): + return _namespace_SIO('http://semanticscience.org/resource/SIO_001104') + + @classmethod + def to_ingest(cls): + """to ingest is the capability to take into the body by the mouth for digestion or absorption + (cls, http://semanticscience.org/resource/SIO_001105) + """ + return _namespace_SIO('http://semanticscience.org/resource/SIO_001105') + + @classmethod + def to_produce(cls): + return _namespace_SIO('http://semanticscience.org/resource/SIO_001106') + + @classmethod + def pathway(cls): + return _namespace_SIO('http://semanticscience.org/resource/SIO_001107') + + @classmethod + def centrality_measure(cls): + return _namespace_SIO('http://semanticscience.org/resource/SIO_001108') + + @classmethod + def mean(cls): + """a mean is the central tendency of a collection of numbers taken as the sum of the numbers divided by the size of the collection. + (cls, http://semanticscience.org/resource/SIO_001109) + """ + return _namespace_SIO('http://semanticscience.org/resource/SIO_001109') + + @classmethod + def arithmeritic_mean(cls): + """a mean is the central tendency of a collection of numbers taken as the sum of the numbers divided by the size of the collection. + (cls, http://semanticscience.org/resource/SIO_001109) + """ + return _namespace_SIO('http://semanticscience.org/resource/SIO_001109') + + @classmethod + def median(cls): + """a median is the numerical value separating the higher half of a sample, a population, or a probability distribution, from the lower half. + (cls, http://semanticscience.org/resource/SIO_001110) + """ + return _namespace_SIO('http://semanticscience.org/resource/SIO_001110') + + @classmethod + def mode(cls): + """a mode is the value that appears most often in a set of data. + (cls, http://semanticscience.org/resource/SIO_001111) + """ + return _namespace_SIO('http://semanticscience.org/resource/SIO_001111') + + @classmethod + def sum(cls): + """a sum is the result of adding a set of values together. + (cls, http://semanticscience.org/resource/SIO_001112) + """ + return _namespace_SIO('http://semanticscience.org/resource/SIO_001112') + + @classmethod + def minimal_value(cls): + """a minimal value is smallest value of an attribute for the entities in the defined set. + (cls, http://semanticscience.org/resource/SIO_001113) + """ + return _namespace_SIO('http://semanticscience.org/resource/SIO_001113') + + @classmethod + def min(cls): + """a minimal value is smallest value of an attribute for the entities in the defined set. + (cls, http://semanticscience.org/resource/SIO_001113) + """ + return _namespace_SIO('http://semanticscience.org/resource/SIO_001113') + + @classmethod + def maximal_value(cls): + """a maximal value is largest value of an attribute for the entities in the defined set. + (cls, http://semanticscience.org/resource/SIO_001114) + """ + return _namespace_SIO('http://semanticscience.org/resource/SIO_001114') + + @classmethod + def max(cls): + """a maximal value is largest value of an attribute for the entities in the defined set. + (cls, http://semanticscience.org/resource/SIO_001114) + """ + return _namespace_SIO('http://semanticscience.org/resource/SIO_001114') + + @classmethod + def member_count(cls): + """a count of the instances of a class or members in a collection. + (cls, http://semanticscience.org/resource/SIO_001115) + """ + return _namespace_SIO('http://semanticscience.org/resource/SIO_001115') + + @classmethod + def union(cls): + """a union is a list of all of the values of an attribute for the entities in the defined set. + (cls, http://semanticscience.org/resource/SIO_001116) + """ + return _namespace_SIO('http://semanticscience.org/resource/SIO_001116') + + @classmethod + def intersection(cls): + """an intersection is a list of only the values of an attribute for the entities in the defined set where all entities have that value. + (cls, http://semanticscience.org/resource/SIO_001117) + """ + return _namespace_SIO('http://semanticscience.org/resource/SIO_001117') + + @classmethod + def sequence(cls): + """a sequence is an ordered list of entities. Like a set, it contains members (cls, also called elements, or terms). + (http://semanticscience.org/resource/SIO_001118) + """ + return _namespace_SIO('http://semanticscience.org/resource/SIO_001118') + + @classmethod + def gene_disease_association_linked_with_casual_mutation(cls): + """a gene-variant disease association in which a mutation in the gene/protein results in the development or maintenance of the disease. + (cls, http://semanticscience.org/resource/SIO_001119) + """ + return _namespace_SIO('http://semanticscience.org/resource/SIO_001119') + + @classmethod + def therapeutic_gene_disease_association(cls): + """a gene disease association in which the gene is a therapeutic marker for the disease. + (cls, http://semanticscience.org/resource/SIO_001120) + """ + return _namespace_SIO('http://semanticscience.org/resource/SIO_001120') + + @classmethod + def gene_disease_association_arising_from_a_therapeutic_role_of_the_gene_protein(cls): + """a gene disease association in which the gene is a therapeutic marker for the disease. + (cls, http://semanticscience.org/resource/SIO_001120) + """ + return _namespace_SIO('http://semanticscience.org/resource/SIO_001120') + + @classmethod + def gene_disease_biomarker_association(cls): + """a gene-disease association in which a the gene/protein is involved in the etiology or maintenance of the disease. + (cls, http://semanticscience.org/resource/SIO_001121) + """ + return _namespace_SIO('http://semanticscience.org/resource/SIO_001121') + + @classmethod + def gene_disease_association_linked_with_genetic_variation(cls): + """a gene-disease association in which a sequence variation (cls, a mutation, a SNP) is associated with the disease. + (http://semanticscience.org/resource/SIO_001122) + """ + return _namespace_SIO('http://semanticscience.org/resource/SIO_001122') + + @classmethod + def gene_variant_disease_association(cls): + """a gene-disease association in which a sequence variation (cls, a mutation, a SNP) is associated with the disease. + (http://semanticscience.org/resource/SIO_001122) + """ + return _namespace_SIO('http://semanticscience.org/resource/SIO_001122') + + @classmethod + def gene_disease_association_linked_with_altered_gene_expression(cls): + """a gene-disease association in which the disease phenotype is associated with an altered expression of the gene. + (cls, http://semanticscience.org/resource/SIO_001123) + """ + return _namespace_SIO('http://semanticscience.org/resource/SIO_001123') + + @classmethod + def gene_disease_association_linked_with_post_translational_modification(cls): + """a gene disease-association in which the disease phenotype is associated with post-translational modifications in the protein product. + (cls, http://semanticscience.org/resource/SIO_001124) + """ + return _namespace_SIO('http://semanticscience.org/resource/SIO_001124') + + @classmethod + def regulation_of_transcription(cls): + return _namespace_SIO('http://semanticscience.org/resource/SIO_001125') + + @classmethod + def regulation_of_translation(cls): + return _namespace_SIO('http://semanticscience.org/resource/SIO_001126') + + @classmethod + def regulation_of_molecular_quantity(cls): + """A process that modulates the frequency, rate or extent of process involved in the creation or destruction of a molecule. + (cls, http://semanticscience.org/resource/SIO_001127) + """ + return _namespace_SIO('http://semanticscience.org/resource/SIO_001127') + + @classmethod + def regulation_of_molecular_production(cls): + return _namespace_SIO('http://semanticscience.org/resource/SIO_001128') + + @classmethod + def regulation_of_molecular_degradation(cls): + return _namespace_SIO('http://semanticscience.org/resource/SIO_001129') + + @classmethod + def protein_mediated_regulation_of_translation(cls): + return _namespace_SIO('http://semanticscience.org/resource/SIO_001130') + + @classmethod + def rna_mediated_regulation_of_translation(cls): + return _namespace_SIO('http://semanticscience.org/resource/SIO_001131') + + @classmethod + def process_maintenance(cls): + """the process of maintaining some the frequency, rate or extent of another process. + (cls, http://semanticscience.org/resource/SIO_001132) + """ + return _namespace_SIO('http://semanticscience.org/resource/SIO_001132') + + @classmethod + def increased_frequency_of_process(cls): + return _namespace_SIO('http://semanticscience.org/resource/SIO_001133') + + @classmethod + def decreased_frequency_of_process(cls): + return _namespace_SIO('http://semanticscience.org/resource/SIO_001134') + + @classmethod + def regulation_of_process_frequency(cls): + return _namespace_SIO('http://semanticscience.org/resource/SIO_001135') + + @classmethod + def regulation_of_process_duration(cls): + return _namespace_SIO('http://semanticscience.org/resource/SIO_001136') + + @classmethod + def increased_duration_of_process(cls): + return _namespace_SIO('http://semanticscience.org/resource/SIO_001137') + + @classmethod + def decreased_duration_of_process(cls): + return _namespace_SIO('http://semanticscience.org/resource/SIO_001138') + + @classmethod + def regulation_of_process_spatial_extent(cls): + return _namespace_SIO('http://semanticscience.org/resource/SIO_001139') + + @classmethod + def increased_spatial_extent_of_process(cls): + return _namespace_SIO('http://semanticscience.org/resource/SIO_001140') + + @classmethod + def decreased_spatial_extent_of_process(cls): + return _namespace_SIO('http://semanticscience.org/resource/SIO_001141') + + @classmethod + def maintenance_of_spatial_extent_of_process(cls): + return _namespace_SIO('http://semanticscience.org/resource/SIO_001142') + + @classmethod + def maintenance_of_duration_of_process(cls): + return _namespace_SIO('http://semanticscience.org/resource/SIO_001143') + + @classmethod + def maintenance_of_frequency_of_process(cls): + return _namespace_SIO('http://semanticscience.org/resource/SIO_001144') + + @classmethod + def regulation_of_participant_quantity(cls): + return _namespace_SIO('http://semanticscience.org/resource/SIO_001145') + + @classmethod + def increased_object_production(cls): + return _namespace_SIO('http://semanticscience.org/resource/SIO_001146') + + @classmethod + def decreased_object_production(cls): + return _namespace_SIO('http://semanticscience.org/resource/SIO_001147') + + @classmethod + def increased_object_consumption(cls): + return _namespace_SIO('http://semanticscience.org/resource/SIO_001148') + + @classmethod + def decreased_object_consumption(cls): + return _namespace_SIO('http://semanticscience.org/resource/SIO_001149') + + @classmethod + def regulation_of_object_consumption(cls): + return _namespace_SIO('http://semanticscience.org/resource/SIO_001150') + + @classmethod + def regulation_of_object_production(cls): + return _namespace_SIO('http://semanticscience.org/resource/SIO_001151') + + @classmethod + def maintenance_of_object_production(cls): + return _namespace_SIO('http://semanticscience.org/resource/SIO_001152') + + @classmethod + def maintenance_of_object_consumption(cls): + return _namespace_SIO('http://semanticscience.org/resource/SIO_001153') + + @classmethod + def number_of_objects_produced(cls): + return _namespace_SIO('http://semanticscience.org/resource/SIO_001160') + + @classmethod + def number_of_objects_consumed(cls): + return _namespace_SIO('http://semanticscience.org/resource/SIO_001161') + + @classmethod + def change_in_number_of_objects_produced(cls): + return _namespace_SIO('http://semanticscience.org/resource/SIO_001162') + + @classmethod + def increase_in_number_of_objects_produced(cls): + return _namespace_SIO('http://semanticscience.org/resource/SIO_001163') + + @classmethod + def decrease_in_number_of_objects_produced(cls): + return _namespace_SIO('http://semanticscience.org/resource/SIO_001164') + + @classmethod + def user_account(cls): + """an user account allows a user to authenticate to system services and be granted authorization to access them. + (cls, http://semanticscience.org/resource/SIO_001165) + """ + return _namespace_SIO('http://semanticscience.org/resource/SIO_001165') + + @classmethod + def annotation(cls): + """An annotation is a written explanatory or critical description, or other in-context information (cls, e.g., pattern, motif, link), that has been associated with data or other types of information. + (http://semanticscience.org/resource/SIO_001166) + """ + return _namespace_SIO('http://semanticscience.org/resource/SIO_001166') + + @classmethod + def comment(cls): + """a comment is a verbal or written remark often related to an added piece of information, or an observation or statement. + (cls, http://semanticscience.org/resource/SIO_001167) + """ + return _namespace_SIO('http://semanticscience.org/resource/SIO_001167') + + @classmethod + def audio_recording(cls): + """an audio recording is an electrical or mechanical inscription and re-creation of sound waves, such as spoken voice, singing, instrumental music, or sound effects. + (cls, http://semanticscience.org/resource/SIO_001168) + """ + return _namespace_SIO('http://semanticscience.org/resource/SIO_001168') + + @classmethod + def issue(cls): + """an issue is a single instance of a periodically published journal, magazine, or newspaper. + (cls, http://semanticscience.org/resource/SIO_001169) + """ + return _namespace_SIO('http://semanticscience.org/resource/SIO_001169') + + @classmethod + def slideshow(cls): + """a slideshow is a visual presentation of information contained within a collection of slides. + (cls, http://semanticscience.org/resource/SIO_001170) + """ + return _namespace_SIO('http://semanticscience.org/resource/SIO_001170') + + @classmethod def organism(cls): """a biological organisn is a biological entity that consists of one or more cells and is capable of genomic replication (cls, independently or not). (http://semanticscience.org/resource/SIO_010000) """ return _namespace_SIO('http://semanticscience.org/resource/SIO_010000') @@ -7353,12 +7912,12 @@ @classmethod def molecular_complex_dissociation(cls): return _namespace_SIO('http://semanticscience.org/resource/SIO_010286') @classmethod - def biochemical_regulation(cls): - """Biochemical regulation is a biochemical process that changes the frequency, rate or extent of a downstream biochemical process. + def regulation_of_biochemical_process(cls): + """A process that changes the frequency, rate or extent of a biochemical process. (cls, http://semanticscience.org/resource/SIO_010287) """ return _namespace_SIO('http://semanticscience.org/resource/SIO_010287') @classmethod @@ -7374,33 +7933,33 @@ (cls, http://semanticscience.org/resource/SIO_010289) """ return _namespace_SIO('http://semanticscience.org/resource/SIO_010289') @classmethod - def positive_regulation(cls): - """Positve regulation is a biochemical regulation that increases the frequency, rate or extent of a downstream biochemical process. + def process_up_regulation(cls): + """up-regulation is a process that increases the frequency, rate or extent of one or more processes in relation to a reference state. (cls, http://semanticscience.org/resource/SIO_010295) """ return _namespace_SIO('http://semanticscience.org/resource/SIO_010295') @classmethod - def Positive_biochemical_regulation(cls): - """Positve regulation is a biochemical regulation that increases the frequency, rate or extent of a downstream biochemical process. + def positive_regulation(cls): + """up-regulation is a process that increases the frequency, rate or extent of one or more processes in relation to a reference state. (cls, http://semanticscience.org/resource/SIO_010295) """ return _namespace_SIO('http://semanticscience.org/resource/SIO_010295') @classmethod - def negative_regulation(cls): - """Negative regulation is a biochemical regulation that decreases the frequency, rate or extent of a downstream biochemical process. + def process_down_regulation(cls): + """down-regulation is a process that decreases the frequency, rate or extent of one or more processes in relation to a reference state. (cls, http://semanticscience.org/resource/SIO_010296) """ return _namespace_SIO('http://semanticscience.org/resource/SIO_010296') @classmethod - def Negative_biochemical_regulation(cls): - """Negative regulation is a biochemical regulation that decreases the frequency, rate or extent of a downstream biochemical process. + def negative_regulation(cls): + """down-regulation is a process that decreases the frequency, rate or extent of one or more processes in relation to a reference state. (cls, http://semanticscience.org/resource/SIO_010296) """ return _namespace_SIO('http://semanticscience.org/resource/SIO_010296') @classmethod @@ -7473,10 +8032,13 @@ def pharmaceutical_component(cls): return _namespace_SIO('http://semanticscience.org/resource/SIO_010338') @classmethod def to_covalently_modify(cls): + """to covalently modify is to materially change a molecule by adding or removing covalent bonds between atoms. + (cls, http://semanticscience.org/resource/SIO_010340) + """ return _namespace_SIO('http://semanticscience.org/resource/SIO_010340') @classmethod def covalently_connected_entity(cls): """A covalently connected molecular entity is the mereological sum of a collection of covalently bonded atoms. @@ -7524,14 +8086,20 @@ def to_cleave(cls): return _namespace_SIO('http://semanticscience.org/resource/SIO_010349') @classmethod def to_combine(cls): + """to combine is the capability to modify a set of objects in a way that the object is merged with another object to form a new object or substance. + (cls, http://semanticscience.org/resource/SIO_010351) + """ return _namespace_SIO('http://semanticscience.org/resource/SIO_010351') @classmethod def to_breathe(cls): + """to breathe is the capability to inhale and exhale air into the body during respiration. + (cls, http://semanticscience.org/resource/SIO_010353) + """ return _namespace_SIO('http://semanticscience.org/resource/SIO_010353') @classmethod def to_conformationally_activate(cls): return _namespace_SIO('http://semanticscience.org/resource/SIO_010354') @@ -7552,22 +8120,34 @@ def product(cls): return _namespace_SIO('http://semanticscience.org/resource/SIO_010363') @classmethod def to_be_modified(cls): + """to be modified is the capability to be actively interacted with in such a way that it leads to a physical reconfiguration. + (cls, http://semanticscience.org/resource/SIO_010364) + """ return _namespace_SIO('http://semanticscience.org/resource/SIO_010364') @classmethod def to_be_cleaved(cls): + """to be cleaved is the capability to be modified in a way that splits one part of the object from the other. + (cls, http://semanticscience.org/resource/SIO_010365) + """ return _namespace_SIO('http://semanticscience.org/resource/SIO_010365') @classmethod def to_be_covalently_modified(cls): + """to be covalently modified is the capability of a chemical entity to have bonds added or removed + (cls, http://semanticscience.org/resource/SIO_010366) + """ return _namespace_SIO('http://semanticscience.org/resource/SIO_010366') @classmethod def to_be_combined(cls): + """to be combined is the capability to be modified in a way that the object is merged with another object to form a new object or substance. + (cls, http://semanticscience.org/resource/SIO_010367) + """ return _namespace_SIO('http://semanticscience.org/resource/SIO_010367') @classmethod def to_be_transported(cls): """to be transported is the disposition to undergo motion. @@ -7575,30 +8155,48 @@ """ return _namespace_SIO('http://semanticscience.org/resource/SIO_010368') @classmethod def to_be_electronically_modified(cls): + """to be electronically modified is the capability of a chemical entity to have electrons added or removed + (cls, http://semanticscience.org/resource/SIO_010369) + """ return _namespace_SIO('http://semanticscience.org/resource/SIO_010369') @classmethod def to_gain_an_electron(cls): + """to gain an electron is the capability of a chemical entity to receive an electron. + (cls, http://semanticscience.org/resource/SIO_010370) + """ return _namespace_SIO('http://semanticscience.org/resource/SIO_010370') @classmethod def to_lose_an_electron(cls): + """to lose an electron is the capability of a chemical entity to lose an electron. + (cls, http://semanticscience.org/resource/SIO_010371) + """ return _namespace_SIO('http://semanticscience.org/resource/SIO_010371') @classmethod def to_be_activated(cls): + """to be activated is the capability to be modified in such a way that the conformational change leads to an increase in another capability. + (cls, http://semanticscience.org/resource/SIO_010372) + """ return _namespace_SIO('http://semanticscience.org/resource/SIO_010372') @classmethod def to_be_inhibited(cls): + """to be inhibited is the capability to be modified in such a way that the conformational change leads to an decrease in another capability. + (cls, http://semanticscience.org/resource/SIO_010373) + """ return _namespace_SIO('http://semanticscience.org/resource/SIO_010373') @classmethod def to_be_conformationally_changed(cls): + """to be conformationally changed is the capability to be modified in such a way that the object's conformation is changed. + (cls, http://semanticscience.org/resource/SIO_010374) + """ return _namespace_SIO('http://semanticscience.org/resource/SIO_010374') @classmethod def multicellular_organism(cls): """a multi-cellular organism is an organism that consists of more than one cell. @@ -7671,11 +8269,11 @@ """ return _namespace_SIO('http://semanticscience.org/resource/SIO_010416') @classmethod def solvent(cls): - """A solvent is a liquid substance that can dissolve other substances (cls, solutes). + """A solvent is a substance that can dissolve other substances (cls, solutes). (http://semanticscience.org/resource/SIO_010417) """ return _namespace_SIO('http://semanticscience.org/resource/SIO_010417') @classmethod @@ -7720,12 +8318,12 @@ (cls, http://semanticscience.org/resource/SIO_010426) """ return _namespace_SIO('http://semanticscience.org/resource/SIO_010426') @classmethod - def solution_component(cls): - """a solution component is a part of a solution. + def liquid_solution_component(cls): + """a liquid solution component is a part of a liquid solution. (cls, http://semanticscience.org/resource/SIO_010427) """ return _namespace_SIO('http://semanticscience.org/resource/SIO_010427') @classmethod @@ -7903,10 +8501,13 @@ """ return _namespace_SIO('http://semanticscience.org/resource/SIO_010459') @classmethod def nonpolar_solvent(cls): + """a non-polar solvent is a solvent that exhibits a non-polar quality. + (cls, http://semanticscience.org/resource/SIO_010460) + """ return _namespace_SIO('http://semanticscience.org/resource/SIO_010460') @classmethod def positive_charge(cls): """the quality of having a positive charge @@ -8129,11 +8730,11 @@ """ return _namespace_SIO('http://semanticscience.org/resource/SIO_010525') @classmethod def chemical_reaction_pathway(cls): - """a chemical reaction pathway specifies is a series of chemical reactions towards producing some chemical product. + """a chemical reaction pathway specifies a series of chemical reactions towards producing some chemical product. (cls, http://semanticscience.org/resource/SIO_010526) """ return _namespace_SIO('http://semanticscience.org/resource/SIO_010526') @classmethod @@ -8792,12 +9393,12 @@ @classmethod def lawrencium_atom(cls): return _namespace_SIO('http://semanticscience.org/resource/SIO_011117') @classmethod - def covalent_chemical_bond(cls): - """a covalent chemical bond is a strong submolecular interaction between atoms. + def covalent_bond(cls): + """a covalent bond is a strong submolecular interaction between atoms. (cls, http://semanticscience.org/resource/SIO_011118) """ return _namespace_SIO('http://semanticscience.org/resource/SIO_011118') @classmethod @@ -9210,10 +9811,30 @@ return True if uri == _namespace_SIO('http://semanticscience.org/resource/SIO_000974'): return True if uri == _namespace_SIO('http://semanticscience.org/resource/SIO_000975'): return True + if uri == _namespace_SIO('http://semanticscience.org/resource/SIO_001096'): + return True + if uri == _namespace_SIO('http://semanticscience.org/resource/SIO_001097'): + return True + if uri == _namespace_SIO('http://semanticscience.org/resource/SIO_001098'): + return True + if uri == _namespace_SIO('http://semanticscience.org/resource/SIO_001101'): + return True + if uri == _namespace_SIO('http://semanticscience.org/resource/SIO_001154'): + return True + if uri == _namespace_SIO('http://semanticscience.org/resource/SIO_001155'): + return True + if uri == _namespace_SIO('http://semanticscience.org/resource/SIO_001156'): + return True + if uri == _namespace_SIO('http://semanticscience.org/resource/SIO_001157'): + return True + if uri == _namespace_SIO('http://semanticscience.org/resource/SIO_001158'): + return True + if uri == _namespace_SIO('http://semanticscience.org/resource/SIO_001159'): + return True if uri == _namespace_SIO('http://semanticscience.org/resource/SIO_010078'): return True if uri == _namespace_SIO('http://semanticscience.org/resource/SIO_010079'): return True if uri == _namespace_SIO('http://semanticscience.org/resource/SIO_010080'): @@ -10174,12 +10795,10 @@ return True if uri == _namespace_SIO('http://semanticscience.org/resource/SIO_000625'): return True if uri == _namespace_SIO('http://semanticscience.org/resource/SIO_000626'): return True - if uri == _namespace_SIO('http://semanticscience.org/resource/SIO_000627'): - return True if uri == _namespace_SIO('http://semanticscience.org/resource/SIO_000638'): return True if uri == _namespace_SIO('http://semanticscience.org/resource/SIO_000639'): return True if uri == _namespace_SIO('http://semanticscience.org/resource/SIO_000640'): @@ -10234,12 +10853,10 @@ return True if uri == _namespace_SIO('http://semanticscience.org/resource/SIO_000689'): return True if uri == _namespace_SIO('http://semanticscience.org/resource/SIO_000690'): return True - if uri == _namespace_SIO('http://semanticscience.org/resource/SIO_000691'): - return True if uri == _namespace_SIO('http://semanticscience.org/resource/SIO_000692'): return True if uri == _namespace_SIO('http://semanticscience.org/resource/SIO_000693'): return True if uri == _namespace_SIO('http://semanticscience.org/resource/SIO_000694'): @@ -10954,10 +11571,164 @@ return True if uri == _namespace_SIO('http://semanticscience.org/resource/SIO_001082'): return True if uri == _namespace_SIO('http://semanticscience.org/resource/SIO_001083'): return True + if uri == _namespace_SIO('http://semanticscience.org/resource/SIO_001084'): + return True + if uri == _namespace_SIO('http://semanticscience.org/resource/SIO_001085'): + return True + if uri == _namespace_SIO('http://semanticscience.org/resource/SIO_001086'): + return True + if uri == _namespace_SIO('http://semanticscience.org/resource/SIO_001087'): + return True + if uri == _namespace_SIO('http://semanticscience.org/resource/SIO_001088'): + return True + if uri == _namespace_SIO('http://semanticscience.org/resource/SIO_001089'): + return True + if uri == _namespace_SIO('http://semanticscience.org/resource/SIO_001090'): + return True + if uri == _namespace_SIO('http://semanticscience.org/resource/SIO_001091'): + return True + if uri == _namespace_SIO('http://semanticscience.org/resource/SIO_001092'): + return True + if uri == _namespace_SIO('http://semanticscience.org/resource/SIO_001093'): + return True + if uri == _namespace_SIO('http://semanticscience.org/resource/SIO_001094'): + return True + if uri == _namespace_SIO('http://semanticscience.org/resource/SIO_001095'): + return True + if uri == _namespace_SIO('http://semanticscience.org/resource/SIO_001099'): + return True + if uri == _namespace_SIO('http://semanticscience.org/resource/SIO_001100'): + return True + if uri == _namespace_SIO('http://semanticscience.org/resource/SIO_001102'): + return True + if uri == _namespace_SIO('http://semanticscience.org/resource/SIO_001103'): + return True + if uri == _namespace_SIO('http://semanticscience.org/resource/SIO_001104'): + return True + if uri == _namespace_SIO('http://semanticscience.org/resource/SIO_001105'): + return True + if uri == _namespace_SIO('http://semanticscience.org/resource/SIO_001106'): + return True + if uri == _namespace_SIO('http://semanticscience.org/resource/SIO_001107'): + return True + if uri == _namespace_SIO('http://semanticscience.org/resource/SIO_001108'): + return True + if uri == _namespace_SIO('http://semanticscience.org/resource/SIO_001109'): + return True + if uri == _namespace_SIO('http://semanticscience.org/resource/SIO_001110'): + return True + if uri == _namespace_SIO('http://semanticscience.org/resource/SIO_001111'): + return True + if uri == _namespace_SIO('http://semanticscience.org/resource/SIO_001112'): + return True + if uri == _namespace_SIO('http://semanticscience.org/resource/SIO_001113'): + return True + if uri == _namespace_SIO('http://semanticscience.org/resource/SIO_001114'): + return True + if uri == _namespace_SIO('http://semanticscience.org/resource/SIO_001115'): + return True + if uri == _namespace_SIO('http://semanticscience.org/resource/SIO_001116'): + return True + if uri == _namespace_SIO('http://semanticscience.org/resource/SIO_001117'): + return True + if uri == _namespace_SIO('http://semanticscience.org/resource/SIO_001118'): + return True + if uri == _namespace_SIO('http://semanticscience.org/resource/SIO_001119'): + return True + if uri == _namespace_SIO('http://semanticscience.org/resource/SIO_001120'): + return True + if uri == _namespace_SIO('http://semanticscience.org/resource/SIO_001121'): + return True + if uri == _namespace_SIO('http://semanticscience.org/resource/SIO_001122'): + return True + if uri == _namespace_SIO('http://semanticscience.org/resource/SIO_001123'): + return True + if uri == _namespace_SIO('http://semanticscience.org/resource/SIO_001124'): + return True + if uri == _namespace_SIO('http://semanticscience.org/resource/SIO_001125'): + return True + if uri == _namespace_SIO('http://semanticscience.org/resource/SIO_001126'): + return True + if uri == _namespace_SIO('http://semanticscience.org/resource/SIO_001127'): + return True + if uri == _namespace_SIO('http://semanticscience.org/resource/SIO_001128'): + return True + if uri == _namespace_SIO('http://semanticscience.org/resource/SIO_001129'): + return True + if uri == _namespace_SIO('http://semanticscience.org/resource/SIO_001130'): + return True + if uri == _namespace_SIO('http://semanticscience.org/resource/SIO_001131'): + return True + if uri == _namespace_SIO('http://semanticscience.org/resource/SIO_001132'): + return True + if uri == _namespace_SIO('http://semanticscience.org/resource/SIO_001133'): + return True + if uri == _namespace_SIO('http://semanticscience.org/resource/SIO_001134'): + return True + if uri == _namespace_SIO('http://semanticscience.org/resource/SIO_001135'): + return True + if uri == _namespace_SIO('http://semanticscience.org/resource/SIO_001136'): + return True + if uri == _namespace_SIO('http://semanticscience.org/resource/SIO_001137'): + return True + if uri == _namespace_SIO('http://semanticscience.org/resource/SIO_001138'): + return True + if uri == _namespace_SIO('http://semanticscience.org/resource/SIO_001139'): + return True + if uri == _namespace_SIO('http://semanticscience.org/resource/SIO_001140'): + return True + if uri == _namespace_SIO('http://semanticscience.org/resource/SIO_001141'): + return True + if uri == _namespace_SIO('http://semanticscience.org/resource/SIO_001142'): + return True + if uri == _namespace_SIO('http://semanticscience.org/resource/SIO_001143'): + return True + if uri == _namespace_SIO('http://semanticscience.org/resource/SIO_001144'): + return True + if uri == _namespace_SIO('http://semanticscience.org/resource/SIO_001145'): + return True + if uri == _namespace_SIO('http://semanticscience.org/resource/SIO_001146'): + return True + if uri == _namespace_SIO('http://semanticscience.org/resource/SIO_001147'): + return True + if uri == _namespace_SIO('http://semanticscience.org/resource/SIO_001148'): + return True + if uri == _namespace_SIO('http://semanticscience.org/resource/SIO_001149'): + return True + if uri == _namespace_SIO('http://semanticscience.org/resource/SIO_001150'): + return True + if uri == _namespace_SIO('http://semanticscience.org/resource/SIO_001151'): + return True + if uri == _namespace_SIO('http://semanticscience.org/resource/SIO_001152'): + return True + if uri == _namespace_SIO('http://semanticscience.org/resource/SIO_001153'): + return True + if uri == _namespace_SIO('http://semanticscience.org/resource/SIO_001160'): + return True + if uri == _namespace_SIO('http://semanticscience.org/resource/SIO_001161'): + return True + if uri == _namespace_SIO('http://semanticscience.org/resource/SIO_001162'): + return True + if uri == _namespace_SIO('http://semanticscience.org/resource/SIO_001163'): + return True + if uri == _namespace_SIO('http://semanticscience.org/resource/SIO_001164'): + return True + if uri == _namespace_SIO('http://semanticscience.org/resource/SIO_001165'): + return True + if uri == _namespace_SIO('http://semanticscience.org/resource/SIO_001166'): + return True + if uri == _namespace_SIO('http://semanticscience.org/resource/SIO_001167'): + return True + if uri == _namespace_SIO('http://semanticscience.org/resource/SIO_001168'): + return True + if uri == _namespace_SIO('http://semanticscience.org/resource/SIO_001169'): + return True + if uri == _namespace_SIO('http://semanticscience.org/resource/SIO_001170'): + return True if uri == _namespace_SIO('http://semanticscience.org/resource/SIO_010000'): return True if uri == _namespace_SIO('http://semanticscience.org/resource/SIO_010001'): return True if uri == _namespace_SIO('http://semanticscience.org/resource/SIO_010002'): @@ -11766,7 +12537,7 @@ if cls.__parent_properties[uri] == parent: return True return cls.has_parent(cls.__parent_properties[uri], parent) return False - __parent_properties = { _namespace_SIO('http://semanticscience.org/resource/SIO_000008') : _namespace_SIO('http://semanticscience.org/resource/SIO_000001') , _namespace_SIO('http://semanticscience.org/resource/SIO_000011') : _namespace_SIO('http://semanticscience.org/resource/SIO_000001') , _namespace_SIO('http://semanticscience.org/resource/SIO_000020') : _namespace_SIO('http://semanticscience.org/resource/SIO_000210') , _namespace_SIO('http://semanticscience.org/resource/SIO_000028') : _namespace_SIO('http://semanticscience.org/resource/SIO_000145') , _namespace_SIO('http://semanticscience.org/resource/SIO_000029') : _namespace_SIO('http://semanticscience.org/resource/SIO_000096') , _namespace_SIO('http://semanticscience.org/resource/SIO_000053') : _namespace_SIO('http://semanticscience.org/resource/SIO_000028') , _namespace_SIO('http://semanticscience.org/resource/SIO_000054') : _namespace_SIO('http://semanticscience.org/resource/SIO_000053') , _namespace_SIO('http://semanticscience.org/resource/SIO_000059') : _namespace_SIO('http://semanticscience.org/resource/SIO_000008') , _namespace_SIO('http://semanticscience.org/resource/SIO_000060') : _namespace_SIO('http://semanticscience.org/resource/SIO_000205') , _namespace_SIO('http://semanticscience.org/resource/SIO_000061') : _namespace_SIO('http://semanticscience.org/resource/SIO_000322') , _namespace_SIO('http://semanticscience.org/resource/SIO_000062') : _namespace_SIO('http://semanticscience.org/resource/SIO_000322') , _namespace_SIO('http://semanticscience.org/resource/SIO_000063') : _namespace_SIO('http://semanticscience.org/resource/SIO_000062') , _namespace_SIO('http://semanticscience.org/resource/SIO_000064') : _namespace_SIO('http://semanticscience.org/resource/SIO_000219') , _namespace_SIO('http://semanticscience.org/resource/SIO_000066') : _namespace_SIO('http://semanticscience.org/resource/SIO_000253') , _namespace_SIO('http://semanticscience.org/resource/SIO_000068') : _namespace_SIO('http://semanticscience.org/resource/SIO_000061') , _namespace_SIO('http://semanticscience.org/resource/SIO_000093') : _namespace_SIO('http://semanticscience.org/resource/SIO_000068') , _namespace_SIO('http://semanticscience.org/resource/SIO_000095') : _namespace_SIO('http://semanticscience.org/resource/SIO_000011') , _namespace_SIO('http://semanticscience.org/resource/SIO_000096') : _namespace_SIO('http://semanticscience.org/resource/SIO_000093') , _namespace_SIO('http://semanticscience.org/resource/SIO_000128') : _namespace_SIO('http://semanticscience.org/resource/SIO_000061') , _namespace_SIO('http://semanticscience.org/resource/SIO_000132') : _namespace_SIO('http://semanticscience.org/resource/SIO_000322') , _namespace_SIO('http://semanticscience.org/resource/SIO_000139') : _namespace_SIO('http://semanticscience.org/resource/SIO_000132') , _namespace_SIO('http://semanticscience.org/resource/SIO_000145') : _namespace_SIO('http://semanticscience.org/resource/SIO_000322') , _namespace_SIO('http://semanticscience.org/resource/SIO_000202') : _namespace_SIO('http://semanticscience.org/resource/SIO_000145') , _namespace_SIO('http://semanticscience.org/resource/SIO_000203') : _namespace_SIO('http://semanticscience.org/resource/SIO_000322') , _namespace_SIO('http://semanticscience.org/resource/SIO_000204') : _namespace_SIO('http://semanticscience.org/resource/SIO_000322') , _namespace_SIO('http://semanticscience.org/resource/SIO_000205') : _namespace_SIO('http://semanticscience.org/resource/SIO_000212') , _namespace_SIO('http://semanticscience.org/resource/SIO_000206') : _namespace_SIO('http://semanticscience.org/resource/SIO_000772') , _namespace_SIO('http://semanticscience.org/resource/SIO_000207') : _namespace_SIO('http://semanticscience.org/resource/SIO_000772') , _namespace_SIO('http://semanticscience.org/resource/SIO_000208') : _namespace_SIO('http://semanticscience.org/resource/SIO_000773') , _namespace_SIO('http://semanticscience.org/resource/SIO_000209') : _namespace_SIO('http://semanticscience.org/resource/SIO_000773') , _namespace_SIO('http://semanticscience.org/resource/SIO_000210') : _namespace_SIO('http://semanticscience.org/resource/SIO_000628') , _namespace_SIO('http://semanticscience.org/resource/SIO_000211') : _namespace_SIO('http://semanticscience.org/resource/SIO_000203') , _namespace_SIO('http://semanticscience.org/resource/SIO_000212') : _namespace_SIO('http://semanticscience.org/resource/SIO_000001') , _namespace_SIO('http://semanticscience.org/resource/SIO_000213') : _namespace_SIO('http://semanticscience.org/resource/SIO_000425') , _namespace_SIO('http://semanticscience.org/resource/SIO_000214') : _namespace_SIO('http://semanticscience.org/resource/SIO_000425') , _namespace_SIO('http://semanticscience.org/resource/SIO_000215') : _namespace_SIO('http://semanticscience.org/resource/SIO_000011') , _namespace_SIO('http://semanticscience.org/resource/SIO_000216') : _namespace_SIO('http://semanticscience.org/resource/SIO_000008') , _namespace_SIO('http://semanticscience.org/resource/SIO_000217') : _namespace_SIO('http://semanticscience.org/resource/SIO_000223') , _namespace_SIO('http://semanticscience.org/resource/SIO_000218') : _namespace_SIO('http://semanticscience.org/resource/SIO_000224') , _namespace_SIO('http://semanticscience.org/resource/SIO_000219') : _namespace_SIO('http://semanticscience.org/resource/SIO_000011') , _namespace_SIO('http://semanticscience.org/resource/SIO_000221') : _namespace_SIO('http://semanticscience.org/resource/SIO_000008') , _namespace_SIO('http://semanticscience.org/resource/SIO_000222') : _namespace_SIO('http://semanticscience.org/resource/SIO_000011') , _namespace_SIO('http://semanticscience.org/resource/SIO_000223') : _namespace_SIO('http://semanticscience.org/resource/SIO_000008') , _namespace_SIO('http://semanticscience.org/resource/SIO_000224') : _namespace_SIO('http://semanticscience.org/resource/SIO_000011') , _namespace_SIO('http://semanticscience.org/resource/SIO_000225') : _namespace_SIO('http://semanticscience.org/resource/SIO_000235') , _namespace_SIO('http://semanticscience.org/resource/SIO_000226') : _namespace_SIO('http://semanticscience.org/resource/SIO_000236') , _namespace_SIO('http://semanticscience.org/resource/SIO_000227') : _namespace_SIO('http://semanticscience.org/resource/SIO_000643') , _namespace_SIO('http://semanticscience.org/resource/SIO_000228') : _namespace_SIO('http://semanticscience.org/resource/SIO_000644') , _namespace_SIO('http://semanticscience.org/resource/SIO_000229') : _namespace_SIO('http://semanticscience.org/resource/SIO_000132') , _namespace_SIO('http://semanticscience.org/resource/SIO_000230') : _namespace_SIO('http://semanticscience.org/resource/SIO_000132') , _namespace_SIO('http://semanticscience.org/resource/SIO_000231') : _namespace_SIO('http://semanticscience.org/resource/SIO_000062') , _namespace_SIO('http://semanticscience.org/resource/SIO_000232') : _namespace_SIO('http://semanticscience.org/resource/SIO_000062') , _namespace_SIO('http://semanticscience.org/resource/SIO_000233') : _namespace_SIO('http://semanticscience.org/resource/SIO_000011') , _namespace_SIO('http://semanticscience.org/resource/SIO_000234') : _namespace_SIO('http://semanticscience.org/resource/SIO_000008') , _namespace_SIO('http://semanticscience.org/resource/SIO_000235') : _namespace_SIO('http://semanticscience.org/resource/SIO_000586') , _namespace_SIO('http://semanticscience.org/resource/SIO_000236') : _namespace_SIO('http://semanticscience.org/resource/SIO_000646') , _namespace_SIO('http://semanticscience.org/resource/SIO_000240') : _namespace_SIO('http://semanticscience.org/resource/SIO_000203') , _namespace_SIO('http://semanticscience.org/resource/SIO_000241') : _namespace_SIO('http://semanticscience.org/resource/SIO_000652') , _namespace_SIO('http://semanticscience.org/resource/SIO_000242') : _namespace_SIO('http://semanticscience.org/resource/SIO_000652') , _namespace_SIO('http://semanticscience.org/resource/SIO_000243') : _namespace_SIO('http://semanticscience.org/resource/SIO_000322') , _namespace_SIO('http://semanticscience.org/resource/SIO_000244') : _namespace_SIO('http://semanticscience.org/resource/SIO_000352') , _namespace_SIO('http://semanticscience.org/resource/SIO_000245') : _namespace_SIO('http://semanticscience.org/resource/SIO_000294') , _namespace_SIO('http://semanticscience.org/resource/SIO_000246') : _namespace_SIO('http://semanticscience.org/resource/SIO_000245') , _namespace_SIO('http://semanticscience.org/resource/SIO_000247') : _namespace_SIO('http://semanticscience.org/resource/SIO_000244') , _namespace_SIO('http://semanticscience.org/resource/SIO_000248') : _namespace_SIO('http://semanticscience.org/resource/SIO_000352') , _namespace_SIO('http://semanticscience.org/resource/SIO_000249') : _namespace_SIO('http://semanticscience.org/resource/SIO_000294') , _namespace_SIO('http://semanticscience.org/resource/SIO_000250') : _namespace_SIO('http://semanticscience.org/resource/SIO_000248') , _namespace_SIO('http://semanticscience.org/resource/SIO_000251') : _namespace_SIO('http://semanticscience.org/resource/SIO_000249') , _namespace_SIO('http://semanticscience.org/resource/SIO_000252') : _namespace_SIO('http://semanticscience.org/resource/SIO_000212') , _namespace_SIO('http://semanticscience.org/resource/SIO_000253') : _namespace_SIO('http://semanticscience.org/resource/SIO_000008') , _namespace_SIO('http://semanticscience.org/resource/SIO_000254') : _namespace_SIO('http://semanticscience.org/resource/SIO_000011') , _namespace_SIO('http://semanticscience.org/resource/SIO_000255') : _namespace_SIO('http://semanticscience.org/resource/SIO_000008') , _namespace_SIO('http://semanticscience.org/resource/SIO_000272') : _namespace_SIO('http://semanticscience.org/resource/SIO_000736') , _namespace_SIO('http://semanticscience.org/resource/SIO_000273') : _namespace_SIO('http://semanticscience.org/resource/SIO_000053') , _namespace_SIO('http://semanticscience.org/resource/SIO_000274') : _namespace_SIO('http://semanticscience.org/resource/SIO_000497') , _namespace_SIO('http://semanticscience.org/resource/SIO_000277') : _namespace_SIO('http://semanticscience.org/resource/SIO_000631') , _namespace_SIO('http://semanticscience.org/resource/SIO_000278') : _namespace_SIO('http://semanticscience.org/resource/SIO_000252') , _namespace_SIO('http://semanticscience.org/resource/SIO_000283') : _namespace_SIO('http://semanticscience.org/resource/SIO_000272') , _namespace_SIO('http://semanticscience.org/resource/SIO_000286') : _namespace_SIO('http://semanticscience.org/resource/SIO_000497') , _namespace_SIO('http://semanticscience.org/resource/SIO_000288') : _namespace_SIO('http://semanticscience.org/resource/SIO_000203') , _namespace_SIO('http://semanticscience.org/resource/SIO_000291') : _namespace_SIO('http://semanticscience.org/resource/SIO_000230') , _namespace_SIO('http://semanticscience.org/resource/SIO_000292') : _namespace_SIO('http://semanticscience.org/resource/SIO_000231') , _namespace_SIO('http://semanticscience.org/resource/SIO_000293') : _namespace_SIO('http://semanticscience.org/resource/SIO_000203') , _namespace_SIO('http://semanticscience.org/resource/SIO_000294') : _namespace_SIO('http://semanticscience.org/resource/SIO_000243') , _namespace_SIO('http://semanticscience.org/resource/SIO_000310') : _namespace_SIO('http://semanticscience.org/resource/SIO_000093') , _namespace_SIO('http://semanticscience.org/resource/SIO_000311') : _namespace_SIO('http://semanticscience.org/resource/SIO_000232') , _namespace_SIO('http://semanticscience.org/resource/SIO_000312') : _namespace_SIO('http://semanticscience.org/resource/SIO_000229') , _namespace_SIO('http://semanticscience.org/resource/SIO_000313') : _namespace_SIO('http://semanticscience.org/resource/SIO_000310') , _namespace_SIO('http://semanticscience.org/resource/SIO_000322') : _namespace_SIO('http://semanticscience.org/resource/SIO_000001') , _namespace_SIO('http://semanticscience.org/resource/SIO_000323') : _namespace_SIO('http://semanticscience.org/resource/SIO_000128') , _namespace_SIO('http://semanticscience.org/resource/SIO_000324') : _namespace_SIO('http://semanticscience.org/resource/SIO_000202') , _namespace_SIO('http://semanticscience.org/resource/SIO_000325') : _namespace_SIO('http://semanticscience.org/resource/SIO_000322') , _namespace_SIO('http://semanticscience.org/resource/SIO_000332') : _namespace_SIO('http://semanticscience.org/resource/SIO_000563') , _namespace_SIO('http://semanticscience.org/resource/SIO_000334') : _namespace_SIO('http://semanticscience.org/resource/SIO_000652') , _namespace_SIO('http://semanticscience.org/resource/SIO_000335') : _namespace_SIO('http://semanticscience.org/resource/SIO_000652') , _namespace_SIO('http://semanticscience.org/resource/SIO_000338') : _namespace_SIO('http://semanticscience.org/resource/SIO_000563') , _namespace_SIO('http://semanticscience.org/resource/SIO_000339') : _namespace_SIO('http://semanticscience.org/resource/SIO_000557') , _namespace_SIO('http://semanticscience.org/resource/SIO_000341') : _namespace_SIO('http://semanticscience.org/resource/SIO_000425') , _namespace_SIO('http://semanticscience.org/resource/SIO_000352') : _namespace_SIO('http://semanticscience.org/resource/SIO_000243') , _namespace_SIO('http://semanticscience.org/resource/SIO_000355') : _namespace_SIO('http://semanticscience.org/resource/SIO_000132') , _namespace_SIO('http://semanticscience.org/resource/SIO_000356') : _namespace_SIO('http://semanticscience.org/resource/SIO_000062') , _namespace_SIO('http://semanticscience.org/resource/SIO_000362') : _namespace_SIO('http://semanticscience.org/resource/SIO_000008') , _namespace_SIO('http://semanticscience.org/resource/SIO_000363') : _namespace_SIO('http://semanticscience.org/resource/SIO_000011') , _namespace_SIO('http://semanticscience.org/resource/SIO_000364') : _namespace_SIO('http://semanticscience.org/resource/SIO_000253') , _namespace_SIO('http://semanticscience.org/resource/SIO_000365') : _namespace_SIO('http://semanticscience.org/resource/SIO_000219') , _namespace_SIO('http://semanticscience.org/resource/SIO_000369') : _namespace_SIO('http://semanticscience.org/resource/SIO_000273') , _namespace_SIO('http://semanticscience.org/resource/SIO_000420') : _namespace_SIO('http://semanticscience.org/resource/SIO_000425') , _namespace_SIO('http://semanticscience.org/resource/SIO_000421') : _namespace_SIO('http://semanticscience.org/resource/SIO_000425') , _namespace_SIO('http://semanticscience.org/resource/SIO_000422') : _namespace_SIO('http://semanticscience.org/resource/SIO_000283') , _namespace_SIO('http://semanticscience.org/resource/SIO_000424') : _namespace_SIO('http://semanticscience.org/resource/SIO_000283') , _namespace_SIO('http://semanticscience.org/resource/SIO_000425') : _namespace_SIO('http://semanticscience.org/resource/SIO_000001') , _namespace_SIO('http://semanticscience.org/resource/SIO_000426') : _namespace_SIO('http://semanticscience.org/resource/SIO_000425') , _namespace_SIO('http://semanticscience.org/resource/SIO_000427') : _namespace_SIO('http://semanticscience.org/resource/SIO_000424') , _namespace_SIO('http://semanticscience.org/resource/SIO_000477') : _namespace_SIO('http://semanticscience.org/resource/SIO_000422') , _namespace_SIO('http://semanticscience.org/resource/SIO_000482') : _namespace_SIO('http://semanticscience.org/resource/SIO_000283') , _namespace_SIO('http://semanticscience.org/resource/SIO_000484') : 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_namespace_SIO('http://semanticscience.org/resource/SIO_000231') , _namespace_SIO('http://semanticscience.org/resource/SIO_000557') : _namespace_SIO('http://semanticscience.org/resource/SIO_000212') , _namespace_SIO('http://semanticscience.org/resource/SIO_000558') : _namespace_SIO('http://semanticscience.org/resource/SIO_010302') , _namespace_SIO('http://semanticscience.org/resource/SIO_000563') : _namespace_SIO('http://semanticscience.org/resource/SIO_000628') , _namespace_SIO('http://semanticscience.org/resource/SIO_000586') : _namespace_SIO('http://semanticscience.org/resource/SIO_000644') , _namespace_SIO('http://semanticscience.org/resource/SIO_000628') : _namespace_SIO('http://semanticscience.org/resource/SIO_000001') , _namespace_SIO('http://semanticscience.org/resource/SIO_000629') : _namespace_SIO('http://semanticscience.org/resource/SIO_000557') , _namespace_SIO('http://semanticscience.org/resource/SIO_000630') : 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_namespace_SIO('http://semanticscience.org/resource/SIO_010044') , _namespace_SIO('http://semanticscience.org/resource/SIO_011106') : _namespace_SIO('http://semanticscience.org/resource/SIO_010044') , _namespace_SIO('http://semanticscience.org/resource/SIO_011107') : _namespace_SIO('http://semanticscience.org/resource/SIO_010044') , _namespace_SIO('http://semanticscience.org/resource/SIO_011108') : _namespace_SIO('http://semanticscience.org/resource/SIO_010044') , _namespace_SIO('http://semanticscience.org/resource/SIO_011109') : _namespace_SIO('http://semanticscience.org/resource/SIO_010044') , _namespace_SIO('http://semanticscience.org/resource/SIO_011110') : _namespace_SIO('http://semanticscience.org/resource/SIO_010044') , _namespace_SIO('http://semanticscience.org/resource/SIO_011111') : _namespace_SIO('http://semanticscience.org/resource/SIO_010044') , _namespace_SIO('http://semanticscience.org/resource/SIO_011112') : _namespace_SIO('http://semanticscience.org/resource/SIO_010044') , _namespace_SIO('http://semanticscience.org/resource/SIO_011113') : _namespace_SIO('http://semanticscience.org/resource/SIO_010044') , _namespace_SIO('http://semanticscience.org/resource/SIO_011114') : _namespace_SIO('http://semanticscience.org/resource/SIO_010044') , _namespace_SIO('http://semanticscience.org/resource/SIO_011115') : _namespace_SIO('http://semanticscience.org/resource/SIO_010044') , _namespace_SIO('http://semanticscience.org/resource/SIO_011116') : _namespace_SIO('http://semanticscience.org/resource/SIO_010044') , _namespace_SIO('http://semanticscience.org/resource/SIO_011117') : _namespace_SIO('http://semanticscience.org/resource/SIO_010044') , _namespace_SIO('http://semanticscience.org/resource/SIO_011123') : _namespace_SIO('http://semanticscience.org/resource/SIO_000472') , _namespace_SIO('http://semanticscience.org/resource/SIO_011126') : _namespace_SIO('http://semanticscience.org/resource/SIO_010004') , _namespace_SIO('http://semanticscience.org/resource/SIO_011130') : _namespace_SIO('http://semanticscience.org/resource/SIO_011120') }